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11110 Commits

Author SHA1 Message Date
Andreas Enge f5c6e77a7f doc: Drop documentation of deprecated procedures. 
* doc/guix.texi ("build systems"): Drop documentation of
  BUILD-EXPRESSION->DERIVATION.
 2016-02-16 16:37:37 +01:00
Andreas Enge c2c5dc79f1 doc: Use modify-phases syntax in example. 
* doc/guix.texi ("build systems"): Use modify-phases syntax instead of
  alist-delete in example.
 2016-02-16 16:37:37 +01:00
Andreas Enge 4d4c481601 doc: Move paragraphs in description of guix archive. 
* doc/guix.texi ("invoking guix archive"): Move paragraph describing basic
  invocation from the end to the beginning of the section.
 2016-02-16 16:37:37 +01:00
Efraim Flashner b736776255 gnu: hydrogen: Update to 0.9.6.1. 
* gnu/packages/music.scm (hydrogen): Update to 0.9.6.1.
[build-system]: Switch to cmake-build-system.
[arguments]: Enable configure and tests, remove custom phases.
[native-inputs]: Remove python-2, scons. Add cppunit.
[inputs]: Add libarchive, lrdf.
 2016-02-16 17:24:45 +02:00
Ricardo Wurmus 578b05d99e gnu: htseq: Add PySam to inputs. 
* gnu/packages/bioinformatics.scm (htseq)[inputs]: Add "python2-pysam".
 2016-02-16 15:32:15 +01:00
Ricardo Wurmus d15d981ea2 gnu: Add StringTie. 
* gnu/packages/bioinformatics.scm (stringtie): New variable.
 2016-02-16 14:51:10 +01:00
Ricardo Wurmus 469d6589e3 gnu: Add Augeas. 
* gnu/packages/augeas.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
 2016-02-16 14:41:25 +01:00
Efraim Flashner c5a6e33b56 gnu: gpsbabel: Use 'modify-phases'. 
* gnu/packages/gps.scm (gpsbabel)[arguments]: Use 'modify-phases'.
 2016-02-16 12:13:01 +02:00
Efraim Flashner 6f1c3b806a gnu: gpsbabel: Update to 1.5.2. 
* gnu/packages/gps.scm (gpsbabel): Update to 1.5.2.
[inputs]: Remove qt-4, add qt.
 2016-02-16 11:10:45 +02:00
Efraim Flashner d694230abe gnu: librecad: Use 'modify-phases'. 
* gnu/packages/engineering.scm (librecad)[arguments]: Use 'modify-phases'.
 2016-02-16 09:30:40 +02:00
Efraim Flashner d8a4b93253 gnu: librecad: Update to 2.0.9. 
* gnu/packages/engineering.scm (librecad): Update to 2.0.9.
[inputs]: Use qt instead of qt-4.
 2016-02-16 08:53:18 +02:00
Leo Famulari d4e21fbbe0 gnu: iftop: Fix license. 
* gnu/packages/admin.scm (iftop)[license]: Correct 'gpl3' to 'gpl2+'.
 2016-02-15 21:37:07 -05:00
Leo Famulari 6ac2af78e0 gnu: shntool: Fix license. 
* gnu/packages/audio.scm (shntool)[license]: Correct 'gpl3+' to 'gpl2+'
and add 'x11'.
 2016-02-15 21:36:46 -05:00
Leo Famulari 8763fdf8a5 gnu: pioneers: Fix license. 
* gnu/packages/games.scm (pioneers)[license]: Correct 'gpl3+' to 'gpl2+'.
 2016-02-15 21:14:18 -05:00
Rodger Fox 7e2e115501 gnu: Add pioneers. 
* gnu/packages/games.scm (pioneers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-15 20:12:08 -05:00
Leo Famulari be6f30047e gnu: vdirsyncer: Update to 0.9.0. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.9.0.
 2016-02-15 18:48:36 -05:00
Leo Famulari a9da8fec62 gnu: python-click-log: Update to 0.1.3. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.3.
 2016-02-15 18:48:36 -05:00
Leo Famulari c834cf82b6 gnu: python-atomicwrites: Update to 0.1.9. 
* gnu/packages/python.scm (python-atomicwrites): Update to 0.1.9.
 2016-02-15 18:48:36 -05:00
Leo Famulari 97bbc48023 gnu: python-lxml: Update to 3.5.0. 
* gnu/packages/python.scm (python-lxml, python2-lxml): Update to 3.5.0.
[source]: Use pypi-uri.
 2016-02-15 18:48:36 -05:00
Tobias Geerinckx-Rice 85a94d296e gnu: redshift: Update to 1.11. 
* gnu/packages/xdisorg.scm (redshift): Update to 1.11.
 2016-02-15 23:37:21 +01:00
Christopher Allan Webber a4ba286baf gnu: python-sqlalchemy: Update to 1.0.12. 
* gnu/packages/python.scm (python-sqlalchemy): Update to 1.0.12.
 2016-02-15 14:02:06 -08:00
Pjotr Prins 552f5c009e gnu: Add slurm. 
* gnu/packages/parallel.scm (slurm): New variable.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
  New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/parallel.scm: Introduce license name space.

Co-authored-by: Andreas Enge <andreas@enge.fr>
 2016-02-15 22:47:47 +01:00
Ben Woodcroft e70f7a2306 gnu: prodigal: Update to 2.6.3. 
* gnu/packages/bioinformatics.scm (prodigal): Update to 2.6.3.
 2016-02-16 07:18:59 +10:00
Efraim Flashner 7fe8ad7616 gnu: polkit-qt: Build with qt-5. 
*gnu/packages/polkit.scm (polkit-qt)[propagated-inputs]: Use qt.
 2016-02-15 20:22:28 +02:00
Efraim Flashner d1cba090a8 gnu: bazaar: Update to 2.7.0. 
* gnu/packages/version-control.scm (bazaar): Update to 2.7.0.
 2016-02-15 19:53:27 +02:00
Ricardo Wurmus 258c0a365e gnu: r-annotationdbi: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.32.3.
 2016-02-15 16:11:22 +01:00
Ricardo Wurmus 3d7a157c62 gnu: Add audit. 
* gnu/packages/admin.scm (audit): New variable.
 2016-02-15 16:06:09 +01:00
Efraim Flashner fdc1b2fd65 gnu: vera: Update to 1.23. 
* gnu/packages/dictionaries.scm (vera): Update to 1.23.
 2016-02-15 15:49:13 +02:00
Efraim Flashner e0ef3708f7 gnu: nano: Update to 2.5.2. 
* gnu/packages/nano.scm (nano): Update to 2.5.2.
 2016-02-15 15:49:13 +02:00
Efraim Flashner 4bc0c634b3 gnu: bitcoin-core: Update to 0.11.2. 
* gnu/packages/finance.scm (bitcoin-core): Update to 0.11.2.
[native-inputs]: Use python-2 instead of python-wrapper.
 2016-02-15 15:46:00 +02:00
Efraim Flashner 87062f75e4 gnu: owncloud-client: Update to 2.1.1. 
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.1.1.
 2016-02-15 15:46:00 +02:00
Ben Woodcroft cf6edaba74 gnu: vsearch: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0.
[origin]: Adapt to changes in bundling of cityhash.
 2016-02-15 22:54:25 +10:00
Ben Woodcroft a64a8c465d gnu: cityhash: Install citycrc.h. 
* gnu/packages/textutils.scm (cityhash)[arguments]: Install citycrc.h.
[version]: Use standardised format, increment to 1.1-2.
 2016-02-15 22:54:12 +10:00
Mark H Weaver e86409c566 gnu: graphite2: Update to 1.3.5. Update home-page and source URI. 
* gnu/packages/fontutils.scm (graphite2): Update to 1.3.5.
  [source, home-page]: Update to reflect upstream move to github.
 2016-02-15 02:51:35 -05:00
Mark H Weaver 4373278ea5 gnu: libsndfile: Update to 1.0.26 [with follow-up fix CVE-2015-7805]. 
Note: The previous fix for CVE-2015-7805 was incomplete.

* gnu/packages/patches/libsndfile-CVE-2014-9496.patch,
  gnu/packages/patches/libsndfile-CVE-2015-7805.patch: Delete files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/pulseaudio.scm (libsndfile): Update to 1.0.26.
  [source]: Remove patches.
 2016-02-15 02:51:35 -05:00
Christopher Allan Webber ea79dbb240 gnu: libgcrypt: Update to 1.6.5 [fixes CVE-2015-7511]. 
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.6.5.
 2016-02-15 02:51:35 -05:00
Leo Famulari 68bcac6b62 gnu: btrfs-progs: Fix license. 
Reported by Tobias Geerinckx-Rice <tobias.geerinckx.rice@gmail.com>

* gnu/packages/linux.scm (btrfs-progs)[license]: Add GPL2 to list of licenses.
 2016-02-14 21:04:05 -05:00
Nils Gillmann acb381566c gnu: font-terminus: Update to 4.40 
* gnu/packages/fonts.scm (font-terminus): Update to 4.40.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-14 20:46:49 -05:00
Andreas Enge b6b07d9de3 gnu: python-ly: Update to 0.9.3. 
* gnu/packages/python.scm (python-ly): Update to 0.9.3.
 2016-02-14 21:49:56 +01:00
Mark H Weaver b042bdc8fd gnu: lxqt: Update source URLs to use HTTPS. 
* gnu/packages/lxqt.scm (libqtxdg, liblxqt, lxqt-common)
  (lxqt-session)[source]: Use HTTPS URLs.
 2016-02-14 08:48:13 -05:00
Efraim Flashner 38b209110e gnu: openbox: Update to 3.6.1. 
* gnu/packages/openbox.scm (openbox): Update to 3.6.1.
 2016-02-14 09:51:47 +02:00
Efraim Flashner 8826fb241e gnu: postgresql: Update to 9.3.11. [fixes CVE-2015-{5288,5289},CVE-2016-{0766,0773}] 
* gnu/packages/databases.scm (postgresql): Update to 9.3.11.
 2016-02-14 09:34:27 +02:00
Jochem Raat 3c697ffda3 gnu: Add baobab. 
* gnu/packages/gnome.scm (baobab): New variable.
 2016-02-13 21:09:42 -05:00
Al McElrath aa0edd3f5b gnu: Add pianobar. 
* gnu/packages/music.scm (pianobar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-13 18:40:04 -05:00
Christopher Allan Webber cb34dc6c3e gnu: Add python-wtforms 
* gnu/packages/python.scm (python-wtforms, python2-wtforms): New variables.
 2016-02-13 15:03:10 -08:00
Andreas Enge f97c91757d doc: Correct typos. 
* doc/guix.texi: Correct typos, grammar and stylistic points.
 2016-02-13 19:58:22 +01:00
Alex Kost 75cd4b053e gnu: iproute: Update to 4.4.0. 
* gnu/packages/linux.scm (iproute): Update to 4.4.0.
 2016-02-13 20:39:34 +03:00
Alex Kost b53e44fb4e gnu: iproute: Use 'modify-phases'. 
* gnu/packages/linux.scm (iproute)[arguments]: Use 'modify-phases'.
 2016-02-13 20:39:34 +03:00
Andreas Enge a42d99f284 gnu: calibre: Update to 2.51.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.51.0.
 2016-02-13 14:34:50 +01:00
Andreas Enge ec4130b7e7 gnu: gnuplot: Update to 5.0.2. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
 2016-02-13 13:37:49 +01:00