db317b38dc
gnu: dbacl: Update phase style.
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* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-01 22:20:59 +01:00
b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32.
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* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
2018-03-01 21:32:36 +01:00
b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1.
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* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
2018-03-01 21:28:54 +01:00
bfae3f7121
gnu: r-lubridate: Update to 1.7.3.
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* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
2018-03-01 21:28:53 +01:00
eaf0905970
gnu: r-tidyselect: Update to 0.2.4.
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* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
2018-03-01 21:28:53 +01:00
35d12b05f0
gnu: r-rmarkdown: Update to 1.9.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
2018-03-01 21:28:53 +01:00
dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
2018-03-01 21:28:53 +01:00
36e1202b2c
gnu: r-yaml: Update to 2.1.17.
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* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
2018-03-01 21:28:53 +01:00
e3ddb56329
gnu: r-gdtools: Update to 0.1.7.
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* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
2018-03-01 21:28:53 +01:00
e24ccf46f1
gnu: r-rpart: Update to 4.1-13.
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* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
2018-03-01 21:28:53 +01:00
744e06e717
gnu: r-mass: Update to 7.3-49.
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* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
2018-03-01 21:28:53 +01:00
29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14.
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* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01 21:28:53 +01:00
5e38673455
gnu: r-pillar: Update to 1.2.1.
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* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
2018-03-01 21:28:53 +01:00
9d6f392529
gnu: r-truncnorm: Update to 1.0-8.
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* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
2018-03-01 21:28:53 +01:00
9aaf2813e2
gnu: r-scran: Update to 1.6.8.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
2018-03-01 21:28:53 +01:00
6a0e13906b
gnu: r-wgcna: Update to 1.63.
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* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
2018-03-01 21:28:53 +01:00
61cbd49b30
gnu: r-topgo: Update to 2.30.1.
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* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
2018-03-01 21:28:53 +01:00
535014ce60
gnu: r-genomicranges: Update to 1.30.3.
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* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01 21:28:53 +01:00
eb8971b742
gnu: r-limma: Update to 3.34.9.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01 21:28:53 +01:00
22d96920d3
gnu: r-edger: Update to 3.20.9.
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* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01 21:28:53 +01:00
99e4b11d81
gnu: r-shortread: Update to 1.36.1.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
b180893289
gnu: r-dexseq: Update to 1.24.3.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01 21:28:52 +01:00
360ea2bbd5
gnu: efl: Use separate "include" output.
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* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01 22:19:37 +02:00
40a7997e63
gnu: efl: Update to 1.20.7.
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* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01 22:18:58 +02:00
643817e445
gnu: Add patchmatrix.
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* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01 21:12:59 +01:00
1debc5b9d2
gnu: ghc-uuid: Fix build.
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* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
2018-03-01 21:11:43 +01:00
04e7b1e7f9
gnu: golly: Fix source url.
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* gnu/packages/games.scm (golly): Fix source url.
2018-03-01 11:19:56 -06:00
52fb59ef25
gnu: imagemagick: Update to 6.9.9-36.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
2018-03-01 17:40:49 +01:00
fe29681717
gnu: libe-book: Update to 0.1.3.
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* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
2018-03-01 17:40:49 +01:00
814bc35d55
gnu: libabw: Update to 0.1.2.
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* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
2018-03-01 17:40:48 +01:00
c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4.
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* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
9ed31fca81
gnu: libmspub: Update to 0.1.4.
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* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
789445a10a
gnu: xorgproto: Update to 2018.4.
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* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
2018-03-01 17:40:48 +01:00
21b5fc253e
gnu: cuirass: Update to aa4c778.
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* gnu/packages/ci.scm (cuirass): Update to aa4c778.
2018-03-01 17:38:55 +01:00
b402f4ee34
import: cpan: Drop "v" prefix from version strings.
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Fixes <https://bugs.gnu.org/30641 >.
Reported by Oleg Pykhalov <go.wigust@gmail.com>.
* guix/import/cpan.scm (cpan-version): Drop the "v" prefix when it is
there.
2018-03-01 14:54:55 +01:00
35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2.
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* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-01 14:00:21 +01:00
435603a1d6
profiles: 'manifest-add' truly deletes duplicate entries.
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Fixes <https://bugs.gnu.org/30569 >.
Reported by Andreas Enge <andreas@enge.fr>.
* guix/profiles.scm (manifest-add): Don't append ENTRIES as is.
Instead, cons each element of ENTRIES as we fold over it.
Remove unneeded ellispes in 'match' patterns.
2018-03-01 14:00:21 +01:00
acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5
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The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.
Fixes <https://bugs.gnu.org/30662 >.
* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
2018-02-28 23:43:23 -05:00
2adfe819f0
gnu: Remove duplicate definition of emacs-esxml.
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* gnu/packages/emacs.scm (emacs-esxml): Remove.
2018-02-28 23:05:06 +01:00
c1d2236569
gnu: Remove emacs-nov.
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The package already exists with the name "emacs-nov-el".
* gnu/packages/emacs.scm (emacs-nov): Remove.
2018-02-28 23:05:06 +01:00
201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke.
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* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke.
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* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
1b6bc51675
gnu: java-lz4: Use invoke.
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* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
ec32bc9860
gnu: antlr3-3.1: Remove version from package name.
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* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
2018-02-28 23:05:06 +01:00
13f38d31a4
gnu: antlr3-3.1: Use invoke.
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* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
e85c1bf6cd
gnu: java-jansi-native: Simplify.
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* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
2018-02-28 23:05:06 +01:00
3d6925ef51
gnu: java-jansi-native: Fix description.
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* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
2018-02-28 23:05:06 +01:00
6338ea9a88
gnu: java-hawtjni: Simplify build phases.
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* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
2018-02-28 23:05:05 +01:00
080d0b605a
gnu: java-commons-jexl-2: Use invoke.
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* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
2018-02-28 23:05:05 +01:00
8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-".
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* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
2018-02-28 23:05:05 +01:00
Tobias Geerinckx-Rice