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14581 Commits

Author SHA1 Message Date
Efraim Flashner db3cc007e3
gnu: vim: Update to 8.0. 
* gnu/packages/vim.scm (vim): Update to 8.0.
[arguments]: Update files which need /bin/sh patched.
 2016-09-12 21:54:04 +03:00
Leo Famulari 2642231b39
gnu: bowtie: Update to 2.2.9. 
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.9.
 2016-09-12 14:19:37 -04:00
Leo Famulari d8a1be6328
gnu: certbot: Improve synopsis. 
* gnu/packages/tls.scm (certbot)[synopsis]: Add authorship information.
 2016-09-12 13:05:42 -04:00
Leo Famulari 0581c273a4
gnu: Add acme-client. 
* gnu/packages/tls.scm (acme-client): New variable.
 2016-09-12 13:05:42 -04:00
Leo Famulari 974e2b2971
gnu: gnutls: Replace with 3.5.4 [fixes GNUTLS-SA-2016-3]. 
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls-3.5.4): New variable.
 2016-09-12 12:30:33 -04:00
John Darrington e9aba1ea33
gnu: Add nfs-utils 
* gnu/packages/nfs.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-09-12 18:17:57 +02:00
Ricardo Wurmus d108c21228
gnu: r-org-mm-eg-db: Update to 3.3.0. 
* gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.3.0.
 2016-09-12 17:44:49 +02:00
Ricardo Wurmus 6ab7ca24f2
gnu: r-org-dm-eg-db: Update to 3.3.0. 
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.3.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 019be09060
gnu: r-org-ce-eg-db: Update to 3.3.0. 
* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.3.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5cc7cff6ef
gnu: r-org-hs-eg-db: Update to 3.3.0. 
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.3.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 401528b2b5
gnu: r-go-db: Update to 3.3.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.3.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 87a7c55ebd
gnu: r-rmarkdown: Update to 1.0. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus de1eebd7d7
gnu: r-dplyr: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 1b7f85f52d
gnu: r-tidyr: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus c3253ce1b5
gnu: r-irlba: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus f791b689b2
gnu: r-dt: Update to 0.2. 
* gnu/packages/statistics.scm (r-dt): Update to 0.2.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 7931531a23
gnu: r-sparsem: Update to 1.72. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.72.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus b9ab3b08b8
gnu: r-lambda-r: Update to 1.1.9. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.1.9.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 27f10d3db2
gnu: r-futile-logger: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-futile-logger): Update to 1.4.3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus fce4dfd82e
gnu: r-lattice: Update to 0.20-34. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-34.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus bdfc2c954e
gnu: r-plotrix: Update to 3.6-3. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 8c6e2b843e
gnu: r-readr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 1.0.0.
[propagated-inputs]: Add "r-hms", "r-tibble", and "r-r6".
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus b90314b4f8
gnu: Add r-hms. 
* gnu/packages/statistics.scm (r-hms): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus a589acfb08
gnu: Add r-tibble. 
* gnu/packages/statistics.scm (r-tibble): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 348bb8d663
gnu: r-withr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-withr): Update to 1.0.2.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 3bb9708a7f
gnu: r-devtools: Update to 1.12.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.12.0.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2cfac445e
gnu: r-rstudioapi: Update to 0.6. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.6.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e58498b6ee
gnu: r-httr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.2.1.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 130c3c8b93
gnu: r-openssl: Update to 0.9.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.4.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 81147fe886
gnu: r-rversions: Update to 1.0.3. 
* gnu/packages/statistics.scm (r-rversions): Update to 1.0.3.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 03306201a7
gnu: r-multitaper: Update to 1.0-12. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-12.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2ad0228fc
gnu: r-xml2: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.0.0.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ef82bd5888
gnu: r-r6: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.3.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 344d5323d6
gnu: r-crayon: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.2.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ad28491e12
gnu: r-knitr: Update to 1.14. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.14.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 2d037a2d68
gnu: r-mime: Update to 0.5. 
* gnu/packages/statistics.scm (r-mime): Update to 0.5.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 5b67bd6e8f
gnu: r-dbi: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.5-1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 6d6a917a16
gnu: r-lazyeval: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus bf1e9e4517
gnu: r-stringr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.1.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 1f94ede8ea
gnu: r-stringi: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus deb265a7b3
gnu: r-plyr: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 8b2f96e73a
gnu: r-permute: Update to 0.9-4. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 21f45c9d9e
gnu: r-mgcv: Update to 1.8-14. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-14.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus cb27d6ba4e
gnu: r-rcpp: Update to 0.12.7. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.7.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 5aaa12dfb5
gnu: r-digest: Update to 0.6.10. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.10.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 44f711dbe6
gnu: r-biocparallel: Update to 1.6.6. 
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.6.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 10e479a7c0
gnu: r-genomicranges: Update to 1.24.3. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 01ebbb1b76
gnu: r-limma: Update to 3.28.21. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus bbf53cb527
gnu: r-variantannotation: Update to 1.18.7. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7.
 2016-09-12 17:44:42 +02:00