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36243 Commits

Author SHA1 Message Date
Ricardo Wurmus dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
 2018-10-30 21:40:57 +01:00
Ricardo Wurmus 72408357fa
gnu: r-genomicranges: Update to 1.32.7. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
 2018-10-30 21:40:48 +01:00
Ricardo Wurmus 9dad1957ab
gnu: r-limma: Update to 3.36.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
 2018-10-30 21:40:40 +01:00
Ricardo Wurmus 57cf6a14f0
gnu: r-edger: Update to 3.22.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
 2018-10-30 21:40:32 +01:00
Ricardo Wurmus eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
 2018-10-30 21:40:22 +01:00
Ricardo Wurmus e563acb96b
gnu: r-iranges: Update to 2.14.12. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
 2018-10-30 21:40:12 +01:00
Ricardo Wurmus 192c19f484
gnu: r-vegan: Update to 2.5-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
 2018-10-30 21:40:00 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus 6ab5670aba
gnu: r-nloptr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
 2018-10-30 21:39:39 +01:00
Ricardo Wurmus c5bd8a7c23
gnu: r-devtools: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
 2018-10-30 21:39:29 +01:00
Ricardo Wurmus aa99568639
gnu: r-evaluate: Update to 0.12. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
 2018-10-30 21:39:16 +01:00
Ricardo Wurmus 60aac7ec16
gnu: r-robustbase: Update to 0.93-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
 2018-10-30 21:39:06 +01:00
Ricardo Wurmus 16508df1d3
gnu: r-cardata: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
 2018-10-30 21:38:55 +01:00
Ricardo Wurmus 98a4b9d040
gnu: r-zoo: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
 2018-10-30 21:38:35 +01:00
Ricardo Wurmus 834f203c07
gnu: r-tidyselect: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
 2018-10-30 21:38:25 +01:00
Ricardo Wurmus 33fb92aacd
gnu: r-doparallel: Update to 1.0.14. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
 2018-10-30 21:38:16 +01:00
Ricardo Wurmus 3ea7aefd59
gnu: r-snow: Update to 0.4-3. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
 2018-10-30 21:38:03 +01:00
Ricardo Wurmus 62a7492c90
gnu: r-plotrix: Update to 3.7-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
 2018-10-30 21:37:53 +01:00
Ricardo Wurmus 943cab4f72
gnu: r-rstudioapi: Update to 0.8. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
 2018-10-30 21:37:35 +01:00
Ricardo Wurmus 960425c9e3
gnu: r-commonmark: Update to 1.6. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
 2018-10-30 21:37:25 +01:00
Ricardo Wurmus e028eaa992
gnu: r-coda: Update to 0.19-2. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
 2018-10-30 21:37:14 +01:00
Ricardo Wurmus 672ba7494b
gnu: r-data-table: Update to 1.11.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
 2018-10-30 21:37:03 +01:00
Ricardo Wurmus f75ee8c691
gnu: r-dplyr: Update to 0.7.7. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
 2018-10-30 21:36:54 +01:00
Ricardo Wurmus 17f6198f06
gnu: r-rlang: Update to 0.3.0.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
 2018-10-30 21:36:44 +01:00
Ricardo Wurmus 822863f8f9
gnu: r-r6: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
 2018-10-30 21:36:35 +01:00
Ricardo Wurmus 3a83251c4f
gnu: r-testthat: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
 2018-10-30 21:36:24 +01:00
Ricardo Wurmus cb448dd251
gnu: r-microbenchmark: Update to 1.4-6. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
 2018-10-30 21:36:13 +01:00
Ricardo Wurmus 9f7438355d
gnu: r-mine: Update to 0.6. 
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
 2018-10-30 21:36:04 +01:00
Ricardo Wurmus 9413424d2d
gnu: r-ggplot2: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
 2018-10-30 21:35:52 +01:00
Ricardo Wurmus 058394967c
gnu: r-digest: Update to 0.6.18. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
 2018-10-30 21:35:40 +01:00
Ricardo Wurmus b85f805090
gnu: r-mgcv: Update to 1.8-25. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
 2018-10-30 21:35:26 +01:00
Ricardo Wurmus 2f5e8f6094
gnu: r-mass: Update to 7.3-51. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
 2018-10-30 21:35:12 +01:00
Ricardo Wurmus 2ea75a8369
gnu: Add r-npsurv. 
* gnu/packages/cran.scm (r-npsurv): New variable.
 2018-10-30 21:35:03 +01:00
Ricardo Wurmus 7c7ee6cf4c
gnu: Add r-lsei. 
* gnu/packages/cran.scm (r-lsei): New variable.
 2018-10-30 21:34:55 +01:00
Ricardo Wurmus 74cc74e434
gnu: Add r-summarytools. 
* gnu/packages/cran.scm (r-summarytools): New variable.
 2018-10-30 21:34:45 +01:00
Ricardo Wurmus 319a80ce96
gnu: Add r-pander. 
* gnu/packages/cran.scm (r-pander): New variable.
 2018-10-30 21:34:35 +01:00
Ricardo Wurmus 9b02d1a11e
gnu: Add r-rapportools. 
* gnu/packages/cran.scm (r-rapportools): New variable.
 2018-10-30 21:34:25 +01:00
Ricardo Wurmus 5df4e27fec
gnu: Add r-rcmdcheck. 
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
 2018-10-30 21:34:15 +01:00
Ricardo Wurmus 7d8f34707a
gnu: Add r-xopen. 
* gnu/packages/cran.scm (r-xopen): New variable.
 2018-10-30 21:34:05 +01:00
Ricardo Wurmus cbc8e6dd4a
gnu: Add r-remotes. 
* gnu/packages/cran.scm (r-remotes): New variable.
 2018-10-30 21:33:56 +01:00
Ricardo Wurmus 993426244e
gnu: Add r-sessioninfo. 
* gnu/packages/cran.scm (r-sessioninfo): New variable.
 2018-10-30 21:33:47 +01:00
Ricardo Wurmus efefd3ec42
gnu: Add r-usethis. 
* gnu/packages/cran.scm (r-usethis): New variable.
 2018-10-30 21:33:37 +01:00
Ricardo Wurmus 153e5b2ddc
gnu: Add r-clisymbols. 
* gnu/packages/cran.scm (r-clisymbols): New variable.
 2018-10-30 21:33:25 +01:00
Ricardo Wurmus d6871153c8
gnu: Add r-fs. 
* gnu/packages/cran.scm (r-fs): New variable.
 2018-10-30 21:33:13 +01:00
Ricardo Wurmus 21405e81e7
gnu: Add r-gh. 
* gnu/packages/cran.scm (r-gh): New variable.
 2018-10-30 21:33:00 +01:00
Ricardo Wurmus 03f8011220
gnu: Add r-ini. 
* gnu/packages/cran.scm (r-ini): New variable.
 2018-10-30 21:32:45 +01:00
Danny Milosavljevic 46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
 2018-10-30 20:20:55 +01:00
Efraim Flashner a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
 2018-10-30 11:15:40 +02:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-30 11:15:39 +02:00
Efraim Flashner e726f0939e
gnu: mupdf: Update license list. 
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
 2018-10-30 11:15:36 +02:00