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45073 Commits

Author SHA1 Message Date
Ricardo Wurmus 075a90946b
gnu: Add r-biosigner. 
* gnu/packages/bioconductor.scm (r-biosigner): New variable.
 2019-06-10 13:41:48 +02:00
Ricardo Wurmus a9fac3f4d3
gnu: Add r-ropls. 
* gnu/packages/bioconductor.scm (r-ropls): New variable.
 2019-06-10 13:41:45 +02:00
Christopher Baines 4252dace19
services: guix-publish: Configure log rotation. 
* gnu/services/base.scm (%guix-publish-log-rotations): New variable.
(guix-publish-service-type): Extend the rottlog-service-type.
 2019-06-10 07:58:09 +01:00
Christopher Baines b09793172f
services: guix-publish: Log to a file. 
This makes it easier to read the output, as it's recorded in a file.

* gnu/services/base.scm (guix-publish-shepherd-service): Add #:log-file to
make-forkexec-constructor.
 2019-06-10 07:58:06 +01:00
Oleg Pykhalov 47b9614b31
services: Add 'nix-service-type'. 
* gnu/services/nix.scm: New file.
* gnu/local.mk: Add this.
* doc/guix.texi (Miscellaneous Services): Document this.
 2019-06-10 09:15:45 +03:00
Mark H Weaver 31775e400e
gnu: linux-libre: Update to 5.1.8. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.8.
(%linux-libre-hash): Update hash.
 2019-06-10 01:52:15 -04:00
Mark H Weaver 84b3d9dd93
gnu: linux-libre@4.19: Update to 4.19.49. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.49.
(%linux-libre-4.19-hash): Update hash.
 2019-06-10 01:51:08 -04:00
Mark H Weaver 5d293300f8
gnu: linux-libre@4.15: Remove package. 
This release series is no longer supported upstream.

* gnu/packages/linux.scm (%linux-libre-4.15-version)
(%linux-libre-4.15-hash, linux-libre-4.15)
(linux-libre-headers-4.15): Remove variables.
 2019-06-10 01:48:01 -04:00
Mark H Weaver ff5355f58e
gnu: linux-libre@4.14: Update to 4.14.124. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.124.
(%linux-libre-4.14-hash): Update hash.
 2019-06-10 01:45:26 -04:00
Eric Bavier ac30257600
gnu: emacs-idris-mode: Use recent git checkout. 
* gnu/packages/emacs-xyz.scm (emacs-idris-mode)[source]: Use git-fetch.
[version]: Include revision and commit.
 2019-06-09 23:18:16 -05:00
Jack Hill 535a69e9e5
gnu: recutils: Remove emacs-minimal native input. 
* gnu/packages/databases.scm (recutils)[native-inputs]: Remove emacs-minimal.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:48 +03:00
Jack Hill 9df786752e
gnu: Add emacs-recutils. 
* gnu/packages/databases.scm (emacs-recutils): New variable.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
 2019-06-10 07:04:45 +03:00
Tobias Geerinckx-Rice c447eb4d1d
gnu: Restore allegro-mesa-18.2.5-and-later.patch. 
Dropped in 49405aaf5c, it's still in use
by the (leaf) allegro-5.0 package.

* gnu/packages/patches/allegro-mesa-18.2.5-and-later.patch: Newish file.
* gnu/local.mk (dist_patch_DATA): Re-add it.
 2019-06-10 01:26:50 +02:00
Tobias Geerinckx-Rice 310c89e330
gnu: mobile-broadband-provider-info: Update to 20190116. 
* gnu/packages/gnome.scm (mobile-broadband-provider-info): Update to 20190116.
 2019-06-10 01:26:50 +02:00
Tobias Geerinckx-Rice 597ab33d6b
gnu: gnumeric: Update to 1.12.45. 
* gnu/packages/gnome.scm (gnumeric): Update to 1.12.45.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice 0cece1b502
gnu: virtualgl: Update to 2.6.2. 
* gnu/packages/gl.scm (virtualgl): Update to 2.6.2.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice c3c9716e0e
gnu: cfitsio: Update to 3.47. 
* gnu/packages/astronomy.scm (cfitsio): Update to 3.47.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice ee861a54ab
gnu: radeontop: Don't use unstable tarball. 
* gnu/packages/linux.scm (radeontop)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
[home-page]: Move down to its conventional spot.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice 88e1bce53e
gnu: radeontop: Update to 1.2. 
* gnu/packages/linux.scm (radeontop): Update to 1.2.
 2019-06-09 16:18:20 +02:00
Tobias Geerinckx-Rice 940511257c
doc: Fix typos. 
* doc/guix.texi (Version Control Services): Fix typos & edit surrounding
text.
 2019-06-09 15:33:03 +02:00
Ricardo Wurmus 2d1d59ab57
gnu: r-rhisat2: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.0.2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 61730c3db4
gnu: r-aucell: Update to 1.6.1. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.6.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 823e23fffe
gnu: r-msnbase: Update to 2.10.1. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.10.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 85e067161a
gnu: r-iranges: Update to 2.18.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.18.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 303862330b
gnu: r-numderiv: Update to 2016.8-1.1. 
* gnu/packages/statistics.scm (r-numderiv): Update to 2016.8-1.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus eb3f1c2d24
gnu: r-quantreg: Update to 5.40. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.40.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus e95d5ad958
gnu: r-fpc: Update to 2.2-2. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus d0b3d10e80
gnu: r-prabclus: Update to 2.3-1. 
* gnu/packages/statistics.scm (r-prabclus): Update to 2.3-1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus cb6d481561
gnu: r-e1071: Update to 1.7-2. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-2.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 6155b589c3
gnu: r-xml: Update to 3.98-1.20. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.20.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 815c7389b7
gnu: r-dbplyr: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.1.
 2019-06-09 15:19:58 +02:00
Ricardo Wurmus 0638ee43a4
gnu: r-tibble: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.3.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus e7bc880274
gnu: r-markdown: Update to 1.0. 
* gnu/packages/statistics.scm (r-markdown): Update to 1.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 754f09a333
gnu: r-rsvd: Update to 1.0.1. 
* gnu/packages/cran.scm (r-rsvd): Update to 1.0.1.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 85f3ec6a7b
gnu: r-iso: Update to 0.0-18. 
* gnu/packages/cran.scm (r-iso): Update to 0.0-18.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus bf6895ef4f
gnu: r-performance: Update to 0.2.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.2.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus a1473cb4ec
gnu: r-sjstats: Update to 0.17.5. 
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.5.
[propagated-inputs]: Add r-bayestestr and r-performance; remove r-matrix.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 5bdc59c6a9
gnu: r-proc: Update to 1.15.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.15.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus bc418c97ad
gnu: r-sjlabelled: Update to 1.1.0. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.0.
[propagated-inputs]: Remove r-dplyr; add r-tidyselect.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 9ce3d17ee3
gnu: r-tseries: Update to 0.10-47. 
* gnu/packages/cran.scm (r-tseries): Update to 0.10-47.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus f7f65cbaa6
gnu: r-statnet-common: Update to 4.3.0. 
* gnu/packages/cran.scm (r-statnet-common): Update to 4.3.0.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 154e20e5f3
gnu: r-seriation: Update to 1.2-7. 
* gnu/packages/cran.scm (r-seriation): Update to 1.2-7.
 2019-06-09 15:19:57 +02:00
Ricardo Wurmus 8e0267f6e4
gnu: r-stringdist: Update to 0.9.5.2. 
* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.2.
 2019-06-09 15:19:57 +02:00
Marius Bakke 69ecd666d7
Merge branch 'master' into staging 2019-06-09 00:57:36 +02:00
Tobias Geerinckx-Rice c6de5afe5c
gnu: git: Update to 2.22.0. 
* gnu/packages/version-control.scm (git): Update to 2.22.0.
 2019-06-09 00:01:10 +02:00
Marius Bakke 80fa745cf9
gnu: notmuch: Update to 0.29. 
* gnu/packages/mail.scm (notmuch): Update to 0.29.
[source]: Change to ".xz" tarball.
 2019-06-08 23:49:46 +02:00
Marius Bakke 04aec35b78
gnu: po4a: Update to 0.56. 
* gnu/packages/gettext.scm (po4a): Update to 0.56.
 2019-06-08 23:49:46 +02:00
Marius Bakke 2ea01d91b8
gnu: ceph: Update to 13.2.6. 
* gnu/packages/storage.scm (ceph): Update to 13.2.6.
 2019-06-08 23:49:46 +02:00
Ricardo Wurmus fc1ff7fc97
gnu: jalv-select: Update to 1.3. 
* gnu/packages/music.scm (jalv-select): Update to 1.3.
[arguments]: Do not patch jalv.select.h.
 2019-06-08 21:39:22 +02:00
Tobias Geerinckx-Rice 7e6764c1d2
gnu: gtkwave: Update to 3.3.101. 
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.101.
 2019-06-08 07:30:26 +02:00