Commit Graph

30022 Commits

Author SHA1 Message Date
Efraim Flashner c24f1f1614
gnu: patchelf: Use 'target-arm32?' for armhf-linux case.
* gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection
logic with 'target-arm32?' macro.
[arguments]: Same.
2018-03-19 21:48:03 +02:00
Leo Famulari 9687d4042a
gnu: python-paramiko: Update to 2.1.5.
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
2018-03-19 14:34:55 -04:00
Tobias Geerinckx-Rice fe15613cdf
gnu: perl-net-ssleay: Update to 1.85.
* gnu/packages/tls.scm (perl-net-ssleay): Update to 1.85.
2018-03-19 19:27:41 +01:00
Tobias Geerinckx-Rice b824534bb8
gnu: perl-http-message: Update to 6.15.
* gnu/packages/web.scm (perl-http-message): Update to 6.15.
[source]: Update URI.
[native-inputs]: Add perl-try-tiny.
2018-03-19 19:27:40 +01:00
Tobias Geerinckx-Rice a768e41523
gnu: r-minimal, r: Update to 3.4.4.
There seem to be no dependency updates as far as I could find.

* gnu/packages/statistics.scm (r-minimal): Update to 3.4.4.
2018-03-19 19:22:32 +01:00
Leo Famulari 6969ad0edd
gnu: python-pynacl: Update to 1.2.0.
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
2018-03-19 12:37:51 -04:00
Ricardo Wurmus d8f08c85ad
gnu: pigx: Update to 0.0.2.
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
2018-03-19 16:55:43 +01:00
Ricardo Wurmus d93a1c276b
gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1.
* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 16:55:43 +01:00
Tobias Geerinckx-Rice 504be7db58
gnu: bash-completion: Update to 2.8.
* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.
2018-03-19 14:44:13 +01:00
Tobias Geerinckx-Rice 39c6af4774
gnu: hdparm: Update to 9.55.
* gnu/packages/linux.scm (hdparm): Update to 9.55.
2018-03-19 14:41:47 +01:00
Tobias Geerinckx-Rice eaa69a7996
gnu: libtirpc: Update to 1.0.3.
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-03-19 13:25:27 +01:00
Tobias Geerinckx-Rice 86ce44c503
gnu: libtirpc: Always return #t from phases.
* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.
2018-03-19 13:25:26 +01:00
Tobias Geerinckx-Rice 12c069dbcf
gnu: perl-file-basedir: Update to 0.08.
* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08.
2018-03-19 13:25:26 +01:00
Tobias Geerinckx-Rice 0f7514580b
gnu: enlightenment: Update to 0.22.2.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2.
2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice ad19762859
gnu: python-oslo.utils: Update to 3.36.0.
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0.
2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice 207e4d2705
gnu: python-oslo.i18n: Update to 3.20.0.
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0.
2018-03-19 13:24:28 +01:00
Tobias Geerinckx-Rice bae598d6c9
gnu: r-withr: Update to 2.1.2.
* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.
2018-03-19 13:24:27 +01:00
Efraim Flashner 9760061315
gnu: tilda: Update to 1.4.1.
* gnu/packages/terminals.scm (tilda): Update to 1.4.1.
[arguments]: Rename 'autogen phase to 'bootstrap.  Clean up 'bootstrap
phase.
2018-03-19 14:22:28 +02:00
Ricardo Wurmus 32b7ccf9b4
gnu: pigx-chipseq: Update to 0.0.8.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.
2018-03-19 11:07:55 +01:00
Ricardo Wurmus 2915221bcb
gnu: pigx-scrnaseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:55 +01:00
Ricardo Wurmus 9dcb4d22a4
gnu: pigx-bsseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:55 +01:00
Ricardo Wurmus fd757a8f21
gnu: pigx-chipseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:55 +01:00
Ricardo Wurmus 1a29fc3ff9
gnu: pigx-rnaseq: Use pandoc-1.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
2018-03-19 11:07:54 +01:00
Ricardo Wurmus 8c6117ee22
gnu: Add ghc-pandoc-citeproc-with-pandoc-1.
* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
2018-03-19 11:07:54 +01:00
Mark H Weaver 38ef437b0c
gnu: font-dejavu: Return #t from all phases.
* gnu/packages/fonts.scm (font-dejavu)[arguments]: Return #t from
the 'install-conf' phase.
2018-03-18 23:30:35 -04:00
Mark H Weaver b5e530198a
gnu: qpdf: Return #t from all phases.
* gnu/packages/pdf.scm (qpdf)[arguments]: Return #t from 'patch-paths' phase.
2018-03-18 23:30:33 -04:00
Mark H Weaver 56f31a9fd5
gnu: guile-gdbm-ffi: Add support for gdbm-1.14.
* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

* gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments.  Add
the patch, and the 'patch' program.
[propagated-inputs]: Move above arguments.
[arguments]: In the builder, add code to apply the patch.
2018-03-18 23:30:31 -04:00
Mark H Weaver 07e36357a5
gnu: guile-gdbm-ffi: Use 'invoke'.
* gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Use 'invoke'
instead of 'system*'.
2018-03-18 23:30:28 -04:00
Mark H Weaver 74c164e000
gnu: cups: Return #t from all phases.
* gnu/packages/cups.scm (cups, cups-minimal): Return #t from all phases.
2018-03-18 23:30:01 -04:00
Marius Bakke 4eade64706
Merge branch 'master' into staging 2018-03-19 03:50:39 +01:00
Eric Bavier be95bcf088
git-download: Fix recursive checkouts.
* guix/git-download.scm (git-fetch)<build>: Fix match on INPUTS, which may
contain package outputs.
2018-03-18 20:00:44 -05:00
Vijayalakshmi Vedantham 109b2f7c93
gnu: Add r-abbyyr.
* gnu/packages/cran.scm (r-abbyyr): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-19 01:06:41 +01:00
Ludovic Courtès 71e08fde28
glob: Add an extra glob pattern compilation stage.
* guix/glob.scm (compile-glob-pattern): Rename to...
(string->sglob): ... this.
(compile-sglob, string->compiled-sglob): New procedures.
(glob-match?): Replace '?, 'range, and 'set with a single clause.
* tests/glob.scm (test-compile-glob-pattern): Rename to...
(test-string->sglob): ... this.  Adjust accordingly.
(test-glob-match): Use 'string->compiled-sglob' instead of
'compile-glob-pattern'.
* gnu/build/linux-modules.scm (read-module-aliases): Use
'string->compiled-sglob' instead of 'compile-glob-pattern'.
2018-03-18 22:57:17 +01:00
Ludovic Courtès e914b398af
glob: Support square brackets in patterns.
* guix/glob.scm (wildcard-indices): Remove.
(parse-bracket): New procedure.
(compile-glob-pattern): Rewrite.  Support square brackets for sets and
ranges.
(glob-match?): Support sets and ranges.
* tests/glob.scm (test-compile-glob-pattern)
(test-glob-match): New macros.
Use them to rewrite the existing tests, and add new tests.
2018-03-18 22:35:36 +01:00
Ludovic Courtès 675e81a082
linux-modules: 'load-linux-module*' honors BLACK-LIST in recursive calls.
* gnu/build/linux-modules.scm (load-linux-module*): Pass BLACK-LIST in
recursive call.
2018-03-18 22:35:27 +01:00
Ludovic Courtès a57df67b59
linux-modules: Add 'current-kernel-directory'.
* gnu/build/linux-modules.scm (current-kernel-directory): New procedure.
(current-alias-file): Use it.
2018-03-18 22:35:03 +01:00
Ludovic Courtès 248db51c7e
vm: Display a backtrace upon error by default.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass
 #:on-error to 'base-initrd'.
2018-03-18 22:34:40 +01:00
Ludovic Courtès 17cdd3d0fe
tests: elpa: Don't actually download files.
* tests/elpa.scm (eval-test-with-elpa): Mock 'url-fetch'.
2018-03-18 22:33:41 +01:00
Ludovic Courtès 9bb1838c3f
import: elpa: Return 'license:gpl3+ for ELPA only.
Fixes <https://bugs.gnu.org/30836>.
Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>.

* guix/import/elpa.scm (elpa-package->sexp): Add LICENSE parameter and
honor it.
(elpa->guix-package): Pass 'license:gpl3+ only when REPO is 'gnu.
2018-03-18 22:26:34 +01:00
Ludovic Courtès e5425ed950
import: elpa: Adjust test for HTTPS URLs.
This is a followup to 44dd3d579d.

* tests/elpa.scm (eval-test-with-elpa): Use https.
2018-03-18 22:25:54 +01:00
Sohom Bhattacharjee 14f2105dc6
gnu: youtube-dl: Update to 2018.03.14.
* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-18 18:47:16 +01:00
Ricardo Wurmus e923cee1b9
gnu: wayland: Disable failing tests.
* gnu/packages/freedesktop.scm (wayland)[arguments]: Disable tests that fail
in the build environment.
2018-03-18 17:07:55 +01:00
Christopher Baines 72406062b9
gnu: shotwell: Update to 0.28.0.
* gnu/packages/gnome.scm (shotwell): Update to 0.28.0.
2018-03-18 10:35:23 +00:00
Ben Woodcroft e218b0c8b3
gnu: Add ruby-ruby-engine.
* gnu/packages/ruby.scm (ruby-ruby-engine): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft 670ee20a57
gnu: Add ruby-rake.
* gnu/packages/ruby.scm (ruby-rake): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft d64ebebd8e
gnu: Add ruby-erubis.
* gnu/packages/ruby.scm (ruby-erubis): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft b88502c95c
gnu: Add ruby-sporkmonger-rack-mount.
* gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft c4550f7568
gnu: Add ruby-creole.
* gnu/packages/ruby.scm (ruby-creole): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft 6ef8525607
gnu: Add ruby-contest.
* gnu/packages/ruby.scm (ruby-contest): New variable.
2018-03-18 10:23:52 +00:00
Ben Woodcroft a0a7e6903a
gnu: Add ruby-rack-protection.
* gnu/packages/ruby.scm (ruby-rack-protection): New variable.
2018-03-18 10:23:52 +00:00