9bd1333e58
Merge remote-tracking branch 'origin/master' into wip-texlive
2019-08-07 22:26:55 +02:00
fa228db78b
gnu: mesa: Update to 19.1.4.
...
* gnu/packages/gl.scm (mesa): Update to 19.1.4.
2019-08-07 22:07:41 +02:00
55e238f2ab
deploy: Use all machine modules when loading deployment
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* guix/scripts/deploy.scm (load-source-file): Enumerate and include all
submodules of (gnu machine) when loading the provided deployment
specification.
2019-08-07 16:05:58 -04:00
ec12235ce2
reconfigure: Improve tests for system activation.
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* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that
'/run/current-system' points to the activated system, and that new user
accounts specified in the operating system declaration are created.
2019-08-07 15:27:09 -04:00
355ba48c46
gnu: igt-gpu-tools: Rework custom phases.
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* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen
phase to replace 'bootstrap phase.
2019-08-07 20:06:01 +03:00
72bc58f850
gnu: dosbox: Remove extra build phase.
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* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:06:00 +03:00
3192f25948
gnu: zimg: Remove extra build phase.
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* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen
phase.
2019-08-07 20:06:00 +03:00
384242adf1
gnu: leptonica: Remove extra build phase.
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* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:06:00 +03:00
a491856f2a
gnu: ghmm: Remove extra build phase.
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* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:59 +03:00
e3a699380e
gnu: ghmm: Update source file-name field.
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* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name
field to include '-checkout' string.
2019-08-07 20:05:59 +03:00
1f53fdae82
gnu: dovecot-libsodium-plugin: Remove extra build phase.
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* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove
unneeded 'autogen phase.
2019-08-07 20:05:59 +03:00
7b0efd4c32
gnu: dovecot-trees: Remove extra build phase.
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* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:58 +03:00
02abfcca46
gnu: libetpan: Rework custom phases.
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* gnu/packages/mail.scm (libetpan)[arguments]: Use custom 'autogen phase
to replace 'boostrap phase.
2019-08-07 20:05:58 +03:00
1d05b683ef
gnu: libmediainfo: Remove extra build phase.
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* gnu/packages/video.scm (libmediainfo)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:58 +03:00
d05e607c9d
gnu: libsmpeg: Remove extra build phase.
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* gnu/packages/video.scm (libsmpeg)[arguments]: Remove unnecessary
'autogen phase.
2019-08-07 20:05:57 +03:00
2230039427
gnu: vapoursynth: Remove extra build phase.
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* gnu/packages/video.scm (vapoursynth)[arguments]: Remove unneeded
'autogen phase.
2019-08-07 20:05:57 +03:00
fe7023a744
gnu: i3blocks: Remove extra build phase.
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* gnu/packages/wm.scm (i3blocks)[arguments]: Remove unneeded 'autogen
phase.
2019-08-07 20:05:57 +03:00
db736ca20c
gnu: ocproxy: Remove extra build phase.
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* gnu/packages/vpn.scm (ocproxy)[arguments]: Remove unneeded 'autogen
phase.
2019-08-07 20:05:57 +03:00
0d7f282b02
gnu: openconnect: Fix propagated-inputs.
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* gnu/packages/vpn.scm (openconnect)[inputs]: Move libxml2, gnutls,
zlib ...
[propagated-inputs]: ... to here.
2019-08-07 20:05:56 +03:00
9fa7c20be9
gnu: gnome-maps: Fix runtime error.
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Fixes <https://bugs.gnu.org/35761 >.
* gnu/packages/geo.scm (gnome-maps)[arguments]: Add lib output of
gnome-online-accounts and geocode-glib to LD_LIBRARY_PATH.
[inputs]: Add gnome-online-accounts:lib.
2019-08-07 19:03:19 +02:00
fdc0688cba
gnu: r-dt: Update to 0.8.
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* gnu/packages/statistics.scm (r-dt): Update to 0.8.
[propagated-inputs]: Add r-jsonlite.
2019-08-07 12:54:43 +02:00
42a8b01d15
gnu: r-epi: Update to 2.38.
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* gnu/packages/cran.scm (r-epi): Update to 2.38.
2019-08-07 12:54:43 +02:00
2132e92261
gnu: r-ggpubr: Update to 0.2.2.
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* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.2.
[propagated-inputs]: Add r-rlang.
2019-08-07 12:54:43 +02:00
33af00eea4
gnu: r-tinytex: Update to 0.15.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.15.
2019-08-07 12:54:43 +02:00
f503ed92d2
gnu: r-servr: Update to 0.15.
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* gnu/packages/cran.scm (r-servr): Update to 0.15.
2019-08-07 12:54:43 +02:00
18e700517e
gnu: dolphin-emu: Update to commit 24718c1.
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* gnu/packages/emulators.scm (dolphin-emu): Update to commit 24718c1.
2019-08-07 08:15:28 +02:00
9d52e3f3d5
gnu: linux-libre: Update to 5.2.7.
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* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.7.
(linux-libre-5.2-pristine-source)[hash]: Update hash.
2019-08-07 00:28:32 -04:00
9f90e58c4a
gnu: linux-libre@4.19: Update to 4.19.65.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.65.
(linux-libre-4.19-pristine-source)[hash]: Update hash.
2019-08-07 00:28:30 -04:00
7acea31bbc
gnu: linux-libre@4.14: Update to 4.14.137.
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* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.137.
(linux-libre-4.14-pristine-source)[hash]: Update hash.
2019-08-07 00:28:28 -04:00
2b6c7a7cbc
gnu: linux-libre@4.9: Update to 4.9.188.
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* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.188.
(linux-libre-4.9-pristine-source)[hash]: Update hash.
2019-08-07 00:28:12 -04:00
ad6814557e
gnu: linux-libre@4.4: Update to 4.4.188.
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* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.188.
(linux-libre-4.4-pristine-source)[hash]: Update hash.
2019-08-07 00:23:20 -04:00
f2758945fe
gnu: r-ggplotify: Update to 0.0.4.
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* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.4.
2019-08-06 23:38:22 +02:00
5fe9ce982d
gnu: r-bayestestr: Update to 0.2.5.
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* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.5.
2019-08-06 23:38:22 +02:00
fd3119db4f
machine: Implement safety checks.
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* gnu/machine/ssh.scm (machine-check-file-system-availability)
(machine-check-initrd-modules, check-deployment-sanity): New variable.
(deploy-managed-host): Perform safety checks before deploying.
2019-08-06 16:40:25 -04:00
5f04e9f962
reconfigure: Fix GC root installation.
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Fixes <https://bugs.gnu.org/36942 >.
Reported by ison <ison@airmail.cc>.
guix/scripts/system/reconfigure.scm (install-bootloader-program): Switch
new symlink to the canonical bootloader configuration file.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-08-06 22:21:13 +02:00
d97ce20400
machine: Rename 'system' field.
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* gnu/machine.scm (machine-system): Delete variable.
(machine-operating-system): New variable.
All callers changed.
* doc/guix.texi (Invoking guix deploy): Use the
'machine-operating-system' accessor rather than 'machine-system'.
2019-08-06 15:48:51 -04:00
5bc751925d
doc: Add note about signing keys.
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* doc/guix.texi (Invoking guix deploy): Add note explaining that
deployment targets must authorize the coordinator machine's signing key.
2019-08-06 15:16:25 -04:00
ec405a4b01
gnu: perl-hash-merge: Change inputs to propagated-inputs.
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Clone::Choose is required at runtime, so this input needs to be
propagated. This change fixes the sqitch package.
* gnu/packages/perl.scm (perl-hash-merge)[inputs]: Change to
propagated-inputs.
2019-08-06 19:53:51 +01:00
86445c8e35
gnu: ffmpeg: Update to 4.2.
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* gnu/packages/video.scm (ffmpeg): Update to 4.2.
[inputs]: Add dav1d.
* gnu/packages/video.scm (ffmpeg-3.4)[arguments]: Adjust inheritance.
2019-08-06 18:59:28 +02:00
58e37b5441
gnu: nss: Fix build failure on armhf-linux.
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Fixes <https://bugs.gnu.org/36930 >.
* gnu/packages/patches/nss-freebl-stubs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/nss.scm (nss)[source](patches): Add it.
2019-08-06 17:06:57 +02:00
b120789193
gnu: r-rsubread: Update to 1.34.6.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.6.
2019-08-06 15:49:00 +02:00
d6158ecb3b
gnu: r-abaenrichment: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.14.1.
2019-08-06 15:49:00 +02:00
fbe5a0872f
gnu: r-atacseqqc: Update to 1.8.5.
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* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.5.
2019-08-06 15:49:00 +02:00
fcbd8960c2
gnu: r-genomicinteractions: Update to 1.18.1.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.18.1.
2019-08-06 15:49:00 +02:00
109b8ad5f9
gnu: r-chippeakanno: Update to 3.18.2.
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* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.2.
2019-08-06 15:49:00 +02:00
c8e141ab02
gnu: r-msnid: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.18.1.
2019-08-06 15:49:00 +02:00
afe4be49f1
gnu: r-rcas: Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.10.1.
2019-08-06 15:49:00 +02:00
76d9b08e1b
gnu: r-genomicfeatures: Update to 1.36.4.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.4.
2019-08-06 15:48:59 +02:00
e16fe0b50a
gnu: r-rtracklayer: Update to 1.44.2.
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* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.44.2.
2019-08-06 15:48:59 +02:00
6f8760d9f8
gnu: r-summarizedexperiment: Update to 1.14.1.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.14.1.
2019-08-06 15:48:59 +02:00
Ricardo Wurmus