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25350 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice b7883b111d
Merge branch 'master' into core-updates 2017-10-25 20:02:08 +02:00
Tobias Geerinckx-Rice 63bbf38fb1
gnu: expat: Update replacement to 2.2.4 [security fixes]. 
See 'Changes' in the source distribution for more information about the
fixed security issues.

* gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4.
(expat-2.2.2): Replace with...
(expat-2.2.4): ...new variable.
 2017-10-25 19:06:37 +02:00
Tobias Geerinckx-Rice c61cac6902
gnu: tor: Update to 0.3.1.8. 
* gnu/packages/tor.scm (tor): Update to 0.3.1.8.
 2017-10-25 18:13:09 +02:00
Tobias Geerinckx-Rice 65808ba4ec
gnu: sssd: Add missing word to description. 
* gnu/packages/sssd.scm (sssd)[description]: Fix typo.
 2017-10-25 18:13:08 +02:00
Tobias Geerinckx-Rice 06c1304652
gnu: sssd: Update to 1.16.0. 
* gnu/packages/sssd.scm (sssd): Update to 1.16.0.
 2017-10-25 18:13:08 +02:00
Tobias Geerinckx-Rice 3d96f2320a
gnu: ding-libs: Update to 0.6.1. 
* gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.
 2017-10-25 18:13:08 +02:00
Efraim Flashner a6e67d867c
gnu: r-ff: Remove aarch64-linux from supported-systems. 
* gnu/packages/cran.scm (r-ff)[supported-systems]: New field.
 2017-10-25 19:07:11 +03:00
Efraim Flashner dda785f660
gnu: go@1.4: Limit supported systems. 
* gnu/packages/golang.scm (go@1.4)[supported-systems]: New field,
Limit supported systems to x86_64-linux, i686-linux and armhf-linux.
(go@1.9)[supported-systems]: New field.
 2017-10-25 19:07:10 +03:00
Ricardo Wurmus c633b911ce
gnu: perl-moox-file-configdir: Fix source URL. 
* gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source
URL.
 2017-10-25 16:40:09 +02:00
Kyle Meyer 4c77abc4da
gnu: Add r-forcats. 
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 16:24:03 +02:00
Ricardo Wurmus 6a23c8b183
gnu: Add sqlite-with-fts3. 
* gnu/packages/databases.scm (sqlite-with-fts3): New variable.

Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
 2017-10-25 15:13:38 +02:00
Pierre Langlois de98f4ed55
gnu: Add crypto++. 
* gnu/packages/crypto.scm (crypto++): New variable.
* gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:13 +02:00
Pierre Langlois 60b7ed9cb8
gnu: Add libechonest. 
* gnu/packages/music.scm (libechonest): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:13 +02:00
Pierre Langlois 412d00728e
gnu: Add qjson. 
* gnu/packages/web.scm (qjson): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 14:54:09 +02:00
Petter 15b0844257
gnu: Add parcimonie. 
* gnu/packages/gnupg.scm (parcimonie): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter 985c41458d
gnu: Add perl-browser-open. 
* gnu/packages/perl.scm (perl-browser-open): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter 65f7f60693
gnu: Add perl-b-keywords. 
* gnu/packages/perl.scm (perl-b-keywords): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter 2a013d0f09
gnu: Add perl-carp-always. 
* gnu/packages/perl.scm (perl-carp-always): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter fc4083c54f
gnu: Add perl-net-dbus-glib. 
* gnu/packages/glib.scm (perl-net-dbus-glib): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:38 +02:00
Petter a372c4da2f
gnu: Add perl-net-dbus. 
* gnu/packages/glib.scm (perl-net-dbus): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 10:49:37 +02:00
Eric Bavier 24404eaf93
gnu: dealii: Update to 8.5.1. 
Fixes compilation with boost@1.64.0.

* gnu/packages/maths.scm (dealii): Update to 8.5.1.
 2017-10-24 20:16:50 -05:00
Eric Bavier 4150da630f
gnu: p4est: Update to 2.0. 
* gnu/packages/maths.scm (p4est): Update to 2.0.
 2017-10-24 20:16:50 -05:00
Eric Bavier 9ce587f231
gnu: libhilbert: Remove package. 
This package's source and webpage has disappeared for some time, and upstream
projects (e.g. libmesh) seem to be bundling it, so we remove it for now.

* gnu/packages/maths.scm (libhilbert): Remove variable.
 2017-10-24 20:16:49 -05:00
Eric Bavier 958b5a1caa
gnu: slepc: Update to 3.8.0. 
* gnu/packages/maths.scm (slepc): Update to 3.8.0.
 2017-10-24 20:16:49 -05:00
Eric Bavier 6fec298d3e
gnu: petsc: Update to 3.8.0. 
* gnu/packages/maths.scm (petsc): Update to 3.8.0
[native-inputs]: Remove perl, which is no longer needed.
 2017-10-24 20:16:42 -05:00
Ben Woodcroft 6f141eff47
gnu: bwa: Update to 0.7.17. 
* gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
 2017-10-25 09:29:22 +10:00
Ben Woodcroft ae6e00f6f9
gnu: bwa: Change source URL to GitHub. 
* gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to
GitHub.
 2017-10-25 09:29:22 +10:00
Petter 85c991b029
gnu: Add perl-moox-options. 
* gnu/packages/perl.scm (perl-moox-options): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:25 +02:00
Ricardo Wurmus 68998abd4f
gnu: perl-getopt-long-descriptive: Update to 0.100. 
* gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100.
[native-inputs]: Add perl-cpan-meta-check.
 2017-10-24 23:30:24 +02:00
Petter b936ddf312
gnu: Add perl-moox-configfromfile. 
* gnu/packages/perl.scm (perl-moox-configfromfile): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Petter 8df39f572c
gnu: Add perl-moox-file-configdir. 
* gnu/packages/perl.scm (perl-moox-file-configdir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Petter 658a4976fa
gnu: Add perl-moox-cmd. 
* gnu/packages/perl.scm (perl-moox-cmd): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:24 +02:00
Ricardo Wurmus b547ef1d09
gnu: perl-list-moreutils: Update to 0.426. 
* gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426.
[arguments]: Work around dotless @INC problem.
[native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and
perl-test-writevariants.
[propagated-inputs]: Add perl-list-moreutils-xs.
 2017-10-24 23:30:24 +02:00
Ricardo Wurmus 189bfb1112
gnu: Add perl-list-moreutils-xs. 
* gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
 2017-10-24 23:30:24 +02:00
Petter 544dc8d46b
gnu: Add perl-libintl-perl. 
* gnu/packages/perl.scm (perl-libintl-perl): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter 180411e3f4
gnu: Add perl-file-configdir. 
* gnu/packages/perl.scm (perl-file-configdir): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter 987232e67d
gnu: Add perl-data-record. 
* gnu/packages/perl.scm (perl-data-record): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter 8dca3bde0e
gnu: Add perl-data-printer. 
* gnu/packages/perl.scm (perl-data-printer): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter 857d75388b
gnu: Add perl-clone-pp. 
* gnu/packages/perl.scm (perl-clone-pp): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
Petter 0de1e5e557
gnu: Add perl-data. 
* gnu/packages/perl.scm (perl-data): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-24 23:30:23 +02:00
ng0 6bf249211d
gnu: gnurl: Update to 7.56.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.56.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-10-24 17:19:15 -04:00
Leo Famulari c27e8c1abd
gnu: util-linux: Update to 2.31. 
* gnu/packages/linux.scm (util-linux): Update to 2.31.
 2017-10-24 16:47:18 -04:00
Marius Bakke 67d527e35e
gnu: glibc: Update to 2.26. 
* gnu/packages/base.scm (glibc/linux): Update to 2.26.
[source](patches): Remove 'glibc-memchr-overflow-i686.patch',
'glibc-o-largefile.patch', 'glibc-vectorized-strcspn-guards.patch,
'glibc-CVE-2017-1000366-pt1.patch', 'glibc-CVE-2017-1000366-pt2.patch' and
'glibc-CVE-2017-1000366-pt3.patch'.
(glibc-2.25): New public variable.
 2017-10-24 22:15:10 +02:00
Marius Bakke 2cce5fc598
gnu: glibc: Incorporate grafted changes. 
* gnu/packages/base.scm (glibc/linux)[source](patches): Add
'glibc-CVE-2017-15670-15671.patch'.
(glibc/fixed): Remove variable.
 2017-10-24 22:04:29 +02:00
Marius Bakke a9c4f1ba51
gnu: curl: Remove graft for 7.56.1. 
* gnu/packages/curl.scm (curl): Update to 7.56.1.
(curl-7.56.1): Remove variable.
 2017-10-24 22:02:27 +02:00
Marius Bakke ca4fd41de8
Merge branch 'master' into core-updates 2017-10-24 22:00:23 +02:00
Leo Famulari 7276eca4dc
gnu: lzo: Update to 2.10. 
* gnu/packages/compression.scm (lzo): Update to 2.10.
 2017-10-24 15:58:53 -04:00
Tobias Geerinckx-Rice dac2a05690
gnu: lzip: Update to 1.19. 
* gnu/packages/compression.scm (lzip): Update to 1.19.
[description]: Fix minor typo.
 2017-10-24 15:56:34 -04:00
Leo Famulari f19d9db538
gnu: libpng: Update to 1.6.34. 
* gnu/packages/image.scm (libpng): Update to 1.6.34.
 2017-10-24 15:56:33 -04:00
Leo Famulari 2738dd99f9
gnu: xz: Update to 5.2.3. 
* gnu/packages/compression.scm (xz): Update to 5.2.3.
 2017-10-24 15:56:30 -04:00