eacf29835d
gnu: Add iml.
...
* gnu/packages/algebra.scm (iml): New variable.
2019-06-20 17:36:39 +02:00
264334716f
gnu: Add ppl.
...
* gnu/packages/maths.scm (ppl): New variable.
2019-06-20 16:46:37 +02:00
ace8e269a4
services: opensmtpd: Extend the PAM service.
...
* gnu/services/mail.scm (%opensmtpd-pam-services): New variable.
(opensmtpd-service-type)[extensions]: Add it, extending
PAM-ROOT-SERVICE-TYPE.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2019-06-20 15:54:51 +02:00
30adfd3600
gnu: ngs-sdk: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
20874b7044
gnu: sra-tools: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
2019-06-20 14:33:57 +02:00
7cb44fb571
gnu: ncbi-vdb: Update to 2.9.6.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
2019-06-20 14:33:57 +02:00
b46a9b9a5e
import: hackage: Add two expected failing test cases.
...
This adds failing test cases for two hackage import bugs:
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743
* tests/hackage.scm: Make comment style consistent. Add two
cabal parsing tests, marked as expected failures.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-20 14:07:01 +02:00
3149c00264
utils: canonical-newline-port: Fix handling of carriage return at buffer end.
...
Prior to this change the added test fails for me locally at byte
1024. It might depend on some default buffer sizes.
Fixes <https://bugs.gnu.org/35863 >.
* tests/utils.scm ("canonical-newline-port-1024"): Add test.
* guix/utils.scm (canonical-newline-port): Correct comments on CR/LF.
Remove CR even when they're at the end of the buffer.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-20 14:07:01 +02:00
c050f18700
gnu: guile: Add 2.2.5.
...
* gnu/packages/guile.scm (guile-2.2.5): New variable.
2019-06-20 14:07:01 +02:00
becb9cbfe1
gnu: python-jupyter-console: Update to 6.0.0.
...
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
2019-06-20 13:14:16 +02:00
8e590c8153
gnu: python2-jupyter-console: Split from python-jupyter-console.
...
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
2019-06-20 13:14:16 +02:00
e2ab228b46
Revert "gnu: Add libgd."
...
This reverts commit 059e4c9a15
2019-06-20 12:39:21 +02:00
197ebc36be
gnu: Add lrcalc.
...
* gnu/packages/algebra.scm (lrcalc): New variable.
2019-06-20 12:21:11 +02:00
66c67e7ba1
gnu: Add eclib.
...
* gnu/packages/algebra.scm (eclib): New variable.
2019-06-20 12:21:04 +02:00
6cbedbd2f2
gnu: Add m4rie.
...
* gnu/packages/algebra.scm (m4rie): New variable.
2019-06-20 12:20:11 +02:00
9553a41dbe
gnu: weechat: update to 2.5
...
* gnu/packages/irc.scm (weechat): update to 2.5
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 11:55:09 +02:00
25cbaa9e70
gnu: Add python-fpylll.
...
* gnu/packages/algebra.scm (python-fpylll): New variable.
2019-06-20 11:07:12 +02:00
1de48e8f8a
gnu: fplll: Update to 5.2.1.
...
* gnu/packages/algebra.scm (fplll): Update to 5.2.1.
[source]: Use Github tagged release: the original tarball no longer exists.
[native-inputs]: Add Autoconf and al.
[homepage]: Update it, the previous one no longer exists.
[description]: Expound description.
2019-06-20 11:03:37 +02:00
f7dbf186b4
services: Fix typo in (gnu services mail) exports.
...
* gnu/services/mail.scm (define-module):
Re-spell ‘%default-imap4d-config-file’.
2019-06-20 10:43:25 +02:00
75a73bb024
gnu: Add symmetrica.
...
* gnu/packages/algebra.scm (symmetrica): New variable.
* gnu/packages/patches/symmetrica-bruch.patch:
* gnu/packages/patches/symmetrica-int32.patch:
* gnu/packages/patches/symmetrica-return_values.patch:
* gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
2019-06-20 10:19:12 +02:00
a42cb6f1f1
gnu: zathura: Install icons.
...
* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and
install the application icons.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 10:10:31 +02:00
059e4c9a15
gnu: Add libgd.
...
* gnu/packages/image.scm (libgd): New variable.
2019-06-20 10:09:17 +02:00
ab398380eb
gnu: Move ratpoints into a different module.
...
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
2019-06-20 09:20:29 +02:00
5543d3bb09
gnu: spdlog: Clarify license.
...
* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt
library.
Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
2019-06-20 05:38:58 +02:00
c5c51bda0b
gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471].
...
* gnu/packages/dns.scm (isc-bind): Update to 9.14.3.
2019-06-20 00:28:14 +02:00
80ee7c4a48
gnu: zn_poly: Rename to zn-poly, according to our naming conventions.
...
Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>.
This is a follow-up to commit 01822e3ebf
2019-06-20 00:03:46 +02:00
a1dcaacb7b
gnu: Add brial.
...
* gnu/packages/sagemath.scm (brial): New variable.
2019-06-19 23:57:49 +02:00
37edfb0f1c
gnu: Add m4ri.
...
* gnu/packages/algebra.scm (m4ri): New variable.
2019-06-19 23:45:29 +02:00
3f9a027ce2
gnu: Add crispy-doom.
...
* gnu/packages/games.scm (crispy-doom): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:28 +02:00
8785a71faf
gnu: emacs-unpackaged-el: Add patch for missing require statement.
...
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el)[source]: Add patch.
* gnu/packages/patches/emacs-unpackaged-req.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
a7a3182761
gnu: Add numix-theme.
...
* gnu/packages/gnome.scm (numix-theme): New variable
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-19 22:56:27 +02:00
aad086d871
grafts: Avoid 'query-valid-derivers' RPC.
...
Previously we'd make 502 'query-valid-derivers' RPCs for
"guix build vim -d", and after this patch, we don't do any.
Furthermore, the previous strategy was "stateful" in the sense that
'item->deriver' could return a derivation that is not the one that was
actually computed by this process, but an "equivalent" one (due to
fixed-output derivations); which one is chosen would depend on the state
of the store.
This in turn means that we'd have to call 'read-derivation-from-file' to
actually read .drv files (as opposed to getting them from
%DERIVATION-CACHE). This is costly and doesn't work with
GUIX_DAEMON_SOCKET=ssh://….
* guix/grafts.scm (item->deriver): Remove.
(reference-origin): New procedure.
(cumulative-grafts): Use it instead of 'item->deriver'.
2019-06-19 22:56:27 +02:00
2ef22a9f37
derivations: Add 'derivation-input-derivation'.
...
* guix/derivations.scm (derivation-input-derivation): New procedure.
(derivation-prerequisites): Use it.
2019-06-19 22:56:27 +02:00
74247b80e5
gnu: Add python-pandocfilters.
...
* gnu/packages/textutils.scm (python-pandocfilters): New variable.
2019-06-19 22:01:53 +02:00
0c842e3a59
gnu: Add ratpoints.
...
* gnu/packages/maths.scm (ratpoints): New variable.
* gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-06-19 21:43:12 +02:00
7c5f623192
gnu: Add gf2x.
...
* gnu/packages/algebra.scm (gf2x): New variable.
2019-06-19 18:56:55 +02:00
01822e3ebf
gnu: Add zn_poly.
...
* gnu/packages/sagemath.scm (zn_poly): New variable.
2019-06-19 18:56:55 +02:00
3923e9d942
gnu: Add pynac.
...
* gnu/packages/sagemath.scm (pynac): New variable.
2019-06-19 18:56:55 +02:00
538230c933
gnu: python-gmpy2: Update to 2.1.0b1.
...
The gmpy2 package has become a standard package in sage-8.7, and the latest
stable release is too old.
* gnu/packages/sagemath.scm (python-gmpy2): Update to 2.1.0b1.
2019-06-19 18:56:55 +02:00
f58b10cb30
gnu: balsa: Update to 2.5.7.
...
* gnu/packages/mail.scm (balsa): Update to 2.5.7.
[inputs]: Build with gtksourceview@3.
2019-06-19 17:58:48 +02:00
c8a67f13c9
gnu: nano: Update to 4.3.
...
* gnu/packages/nano.scm (nano): Update to 4.3.
2019-06-19 17:50:44 +02:00
76472ed959
gnu: notmuch: Update to 0.29.1.
...
* gnu/packages/mail.scm (notmuch): Update to 0.29.1.
2019-06-19 17:50:44 +02:00
903bc2672d
gnu: mpd: Update to 0.21.10.
...
* gnu/packages/mpd.scm (mpd): Update to 0.21.10.
2019-06-19 17:50:44 +02:00
2dcde3c733
gnu: perl-xml-sax: Update to 1.02.
...
* gnu/packages/xml.scm (perl-xml-sax): Update to 1.02.
2019-06-19 17:50:43 +02:00
1f6dd7e9c2
gnu: shadow: Update home page.
...
* gnu/packages/admin.scm (shadow)[home-page]: Update to new project home.
2019-06-19 17:50:43 +02:00
bb3dc8025a
gnu: shadow: Update to 4.7.
...
* gnu/packages/admin.scm (shadow): Update to 4.7.
2019-06-19 17:50:43 +02:00
a6dc3cc197
gnu: ansible: Update to 2.8.1.
...
* gnu/packages/admin.scm (ansible): Update to 2.8.1.
2019-06-19 17:50:43 +02:00
68c138ffce
gnu: filezilla: Update to 3.42.1.
...
* gnu/packages/ftp.scm (filezilla): Update to 3.42.1.
2019-06-19 15:42:50 +02:00
75b803ffa9
gnu: libfilezilla: Update to 0.16.0.
...
* gnu/packages/ftp.scm (libfilezilla): Update to 0.16.0.
2019-06-19 15:42:50 +02:00
f1765b57b8
gnu: Add python-keras.
...
* gnu/packages/machine-learning.scm (python-keras): New variable.
2019-06-19 15:05:45 +02:00
Andreas Enge