e768c37e3f
gnu: r-rpart: Update to 4.1-15.
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* gnu/packages/statistics.scm (r-rpart): Update to 4.1-15.
2019-04-12 19:27:39 +02:00
7f290982dc
gnu: r-reticulate: Update to 1.12.
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* gnu/packages/cran.scm (r-reticulate): Update to 1.12.
2019-04-12 18:34:02 +02:00
c8e070dad7
build: Fix typo in Makefile.am conditional.
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Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>
in <https://bugs.gnu.org/35138 >.
This is a followup to a7ad4505b7
2019-04-12 17:56:23 +02:00
13fd0a3087
install: Use a font with more glyphs on tty2.
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* gnu/system/install.scm (%installation-services): For
'console-font-service-type', use LatGrkCyr-8x16 on tty2.
2019-04-12 17:56:23 +02:00
c7dc604253
installer: Choosing a locale opens the translated manual on tty2.
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Suggested by Florian Pelz.
* gnu/system/install.scm (%installation-node-names): New variable.
(log-to-info): Expect the chosen locale as an argument. Compute the
language, Info file name, and node name. Install the locale.
(documentation-shepherd-service): Add 'locale' parameter to the 'start'
action and honor it. Set GUIX_LOCPATH and TERM as environment variables
for the process.
* gnu/installer.scm (apply-locale): Use (gnu services herd). Call
'stop-service' and 'start-service' with the chosen locale.
2019-04-12 17:56:23 +02:00
126d4c12ce
install: Add standalone documentation service.
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* gnu/system/install.scm (log-to-info): Add 'tty' and 'user'
parameters. Open the tty and change UIDs/GIDs.
(documentation-shepherd-service): New procedure.
(%documentation-users, documentation-service-type): New variables.
(%installation-services): Use it instead of 'mingetty-service'.
2019-04-12 17:56:23 +02:00
96ef856528
doc: Strip the "Limitations" section.
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* doc/guix.texi (Limitations): Strip the paragraph about not being
production-ready. Remove the number of packages.
2019-04-12 17:56:23 +02:00
16cb1c51ad
gnu: fc-host-tools: Fix fc-loadtool.
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* gnu/packages/embedded.scm (fc-host-tools)[arguments]<#:phases>
[patch-installation-paths]: Modify.
2019-04-12 16:30:10 +02:00
21d56a8237
gnu: emacs-direnv: Update to 1.5.0.
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* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 1.5.0.
2019-04-12 14:00:58 +02:00
89647ff1d4
gnu: idris: Run tests.
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* gnu/packages/patches/idris-test-no-node.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/idris.scm (idris)[origin]: Use it.
[native-inputs]: New field.
[arguments]: Remove "#:tests? #f". Add custom 'check' phase after 'install'.
2019-04-11 19:34:01 -05:00
e16bc71015
gnu: idris: Enable FFI and GMP support.
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* gnu/packages/idris.scm (idris)[inputs]: Add ghc-libffi.
[arguments]: Add "-fFFI" and "-fGMP" to #:configure-flags.
2019-04-11 19:34:01 -05:00
fb038f32ae
gnu: Add ghc-libffi.
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* gnu/packages/haskell.scm (ghc-libffi): New variable.
2019-04-11 19:34:00 -05:00
a4df9ba4ec
gnu: idris: Upgrade to 1.3.1.
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* gnu/packages/idris.scm (idris): Upgrade to 1.3.1.
[arguments]: Remove 'update-constraints' phase.
2019-04-11 19:34:00 -05:00
0b30a1a072
build-system/linux-module: Configure module like the kernel.
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* guix/build/linux-module-build-system.scm (configure): New procedure.
(%standard-phases): Add "configure" phase.
2019-04-12 00:46:08 +02:00
55548cdc6a
gnu: rust: Enable parallel tests starting with 1.26.
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* gnu/packages/rust.scm (rust-1.26)[arguments]<#:phases>[check]: Enable
parallel tests.
2019-04-12 00:26:29 +02:00
88e13c2587
build-system/linux-module: Support module source versioning.
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* guix/build-system/linux-module.scm (make-linux-module-builder)
[native-inputs]: Add linux.
[arguments]<#:phases>[install]: Install "System.map" and "Module.symvers".
* guix/build/linux-module-build-system.scm (configure): Delete procedure.
(%standard-phases): Delete "configure" phase.
2019-04-12 00:13:34 +02:00
b2521eed91
gnu: r-ggthemes: Update to 4.1.1.
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* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.1.
2019-04-11 23:37:25 +02:00
5bd8ad8bde
gnu: r-plotly: Update to 4.9.0.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.9.0.
2019-04-11 23:37:24 +02:00
c0fcbdfa9d
gnu: r-plotrix: Update to 3.7-5.
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* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-5.
2019-04-11 23:37:24 +02:00
eacfa685d7
gnu: r-devtools: Update to 2.0.2.
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* gnu/packages/statistics.scm (r-devtools): Update to 2.0.2.
2019-04-11 23:37:24 +02:00
6e95f0e153
gnu: r-backports: Update to 1.1.4.
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* gnu/packages/statistics.scm (r-backports): Update to 1.1.4.
2019-04-11 23:37:24 +02:00
9fc1cdc928
gnu: r-rversions: Update to 1.1.0.
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* gnu/packages/statistics.scm (r-rversions): Update to 1.1.0.
2019-04-11 23:37:24 +02:00
67c6770d39
gnu: r-data-table: Update to 1.12.2.
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* gnu/packages/statistics.scm (r-data-table): Update to 1.12.2.
2019-04-11 23:37:24 +02:00
e9437c5b4a
gnu: r-rlang: Update to 0.3.4.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.3.4.
2019-04-11 23:37:24 +02:00
00d14a4156
gnu: r-ggplot2: Update to 3.1.1.
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* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.1.
2019-04-11 23:37:24 +02:00
79d8fdcce3
gnu: r-nlme: Update to 3.1-139.
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* gnu/packages/statistics.scm (r-nlme): Update to 3.1-139.
2019-04-11 23:37:24 +02:00
9f2a87d1bf
gnu: r-pracma: Update to 2.2.5.
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* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
2019-04-11 23:37:24 +02:00
be5385eb83
gnu: r-wgcna: Update to 1.67.
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* gnu/packages/cran.scm (r-wgcna): Update to 1.67.
2019-04-11 23:37:24 +02:00
d1ed092e83
gnu: r-reinforcelearn: Update to 0.2.1.
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* gnu/packages/cran.scm (r-reinforcelearn): Update to 0.2.1.
2019-04-11 23:37:24 +02:00
000b3ef96f
gnu: r-huge: Update to 1.3.2.
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* gnu/packages/cran.scm (r-huge): Update to 1.3.2.
2019-04-11 23:37:24 +02:00
4c920fbbd5
gnu: r-summarytools: Update to 0.9.3.
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* gnu/packages/cran.scm (r-summarytools): Update to 0.9.3.
[propagated-inputs]: Add r-tibble.
2019-04-11 23:37:24 +02:00
a108ef6209
gnu: r-remotes: Update to 2.0.4.
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* gnu/packages/cran.scm (r-remotes): Update to 2.0.4.
2019-04-11 23:37:24 +02:00
3517101521
gnu: r-usethis: Update to 1.5.0.
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* gnu/packages/cran.scm (r-usethis): Update to 1.5.0.
[propagated-inputs]: Add r-purrr, r-withr, and r-yaml.
2019-04-11 23:37:24 +02:00
a26bd4718b
gnu: r-tinytex: Update to 0.12.
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* gnu/packages/cran.scm (r-tinytex): Update to 0.12.
2019-04-11 23:37:23 +02:00
1235f0d3a2
gnu: r-broom: Update to 0.5.2.
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* gnu/packages/cran.scm (r-broom): Update to 0.5.2.
2019-04-11 23:37:23 +02:00
a315d49633
gnu: r-ddalpha: Update to 1.3.9.
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* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.9.
2019-04-11 23:37:23 +02:00
1e0b0a2ec2
gnu: r-rvest: Update to 0.3.3.
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* gnu/packages/cran.scm (r-rvest): Update to 0.3.3.
2019-04-11 23:37:23 +02:00
c4a50a8a47
gnu: r-genomicfeatures: Update to 1.34.8.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.8.
2019-04-11 23:37:19 +02:00
a6de569ea2
gnu: creduce: Upgrade to 2.8.0.
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* gnu/packages/debug.scm (creduce): Upgrade to 2.8.0.
[inputs]: Use llvm-6 and clang-6. Remove perl-sys-cpu.
[arguments]: Use custom 'check phase.
2019-04-11 12:17:01 -05:00
544265acba
colors: Add 'colorize-matches'.
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* guix/colors.scm (colorize-matches): New procedure.
(color-rules): Rewrite in terms of 'colorize-matches'.
2019-04-11 18:18:13 +02:00
2569ef9dab
colors: Introduce a disjoint type and pre-compute ANSI escapes.
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* guix/colors.scm (color-table, color): Remove.
(<color>): New record type.
(print-color): New procedure.
(define-color-table, color): New macros.
(color-codes->ansi): New procedure.
(%reset): New variable.
(colorize-string): Rewrite accordingly.
(color-rules): Adjust accordingly.
* guix/status.scm (print-build-event): Adjust to new 'colorize-string'
interface.
* guix/ui.scm (%highlight-argument): Likewise.
(%warning-colors, %info-colors, %error-colors, %hint-colors)
(%highlight-colors): Remove.
(%warning-color, %info-color, %error-color, %hint-color)
(%highlight-color): New variables.
2019-04-11 18:18:13 +02:00
c1df77e215
guix gc: '-d' does not attempt to delete non-user-owned roots.
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* guix/scripts/gc.scm (guix-gc)[delete-generations]: Limit to user-owned
roots, unless we're running as root.
2019-04-11 18:18:13 +02:00
c2f6f4e500
gnu: Add python2-checkm-genome.
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* gnu/packages/bioinformatics.scm (python2-checkm-genome): New variable.
2019-04-11 17:54:57 +02:00
4fa16c9ae6
gnu: Add tensorflow.
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* gnu/packages/machine-learning.scm (tensorflow): New variable.
2019-04-11 17:54:57 +02:00
d0a39b928c
gnu: make-linux-libre: Install "Module.symvers".
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* gnu/packages/linux.scm (make-linux-libre): Install "Module.symvers".
2019-04-11 17:54:11 +02:00
6a8c4b9e11
gnu: Add vhba-module.
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* gnu/packages/linux.scm (vhba-module): New variable.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-11 17:52:52 +02:00
ce6312999f
Add (guix build-system linux-module).
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* guix/build/linux-module-build-system.scm: New file.
* guix/build-system/linux-module.scm: New file.
* doc/guix.texi (Build Systems): Document it.
* Makefile.am (MODULES): Add them.
2019-04-11 17:50:18 +02:00
12327d7447
gnu: guitarix: Update to 0.38.1.
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* gnu/packages/audio.scm (guitarix): Update to 0.38.1.
2019-04-11 17:18:08 +02:00
36f4f1e297
gnu: Add pplacer.
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* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables.
2019-04-11 17:18:08 +02:00
fb168a310e
gnu: ocaml-mcl: Do not use unstable tarball.
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* gnu/packages/machine-learning.scm (ocaml-mcl)[source]: Use git-fetch.
2019-04-11 17:18:08 +02:00
Ricardo Wurmus