Commit Graph

26692 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages.
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
2017-12-24 16:12:13 +01:00
Tobias Geerinckx-Rice 7459cb9305
services: messaging: Use HTTPS for prosody.im URLs.
* gnu/services/messaging.scm (prosody-configuration): Use HTTPS whenever
referring to prosody.im URLs in documentation.
* doc/guix.texi (Messaging Services): Likewise.
2017-12-24 16:12:12 +01:00
Rutger Helling 6cd46747e7
gnu: Add wine64-staging.
* gnu/packages/wine.scm (wine64-staging): New variable.
2017-12-24 16:07:52 +01:00
Kei Kebreau c154c97f90
gnu: gambit-c: Update to 4.8.8.
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.8.
2017-12-24 10:04:32 -05:00
Nicolas Goaziou 51f019072d
gnu: wine: Add missing copyright line. 2017-12-24 16:02:53 +01:00
Rutger Helling 141708ed39
gnu: wine-staging: Add gtk+, libva inputs.
* gnu/packages/wine.scm (wine-staging)[inputs]: Add gtk+ and libva.
2017-12-24 15:47:45 +01:00
Nicolas Goaziou 7866d8c819
gnu: Add wine-staging.
* gnu/packages/wine.scm (wine-staging): New variable.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2017-12-24 15:06:32 +01:00
Rutger Helling 546f86de16
gnu: xpra: Update to 2.2.1.
* gnu/packages/xorg.scm (xpra): Update to 2.2.1.
2017-12-24 13:59:57 +01:00
Kei Kebreau 7815d09f77
gnu: racket: Update to 6.11.
* gnu/packages/scheme.scm (racket): Update to 6.11.
2017-12-23 20:47:21 -05:00
Tobias Geerinckx-Rice dbd37c1381
gnu: openstack: Update ‘permanently moved’ home pages.
In practice, this switches all of them to HTTPS.

* gnu/packages/openstack.scm (python-debtcollector, python-mox3)
(python-os-client-config, python-oslo.context, python-oslo.i18n)
(python-oslo.log, python-oslo.serialization, python-oslosphinx)
(python-oslotest, python-oslo.utils, python-keystoneclient)
(python-swiftclient, python-git-review)[home-page]: Update.
2017-12-24 00:00:51 +01:00
Tobias Geerinckx-Rice 9be5ecdf8a
gnu: python, python-web: Update ‘permanently moved’ home pages.
In practice, this switches all of them to HTTPS.

* gnu/packages/python.scm (python-six, python-spectra, python-scipy)
(python-beautifulsoup4, python-termcolor, python-rsa, python-anyjson)
(python-whoosh, python2-pathlib2, python-pbkdf2, python-ansi2html)
(python-rfc3987, python-validate-email, python-swagger-spec-validator)
[home-page]: Update.
* gnu/packages/python-web.scm (python-sockjs-tornado, python-webob)
(python-zope-event, python-zope-testing, python-zope-testrunner)
(python-zope-i18nmessageid, python-zope-schema, python-zope-configuration)
(python-zope-proxy, python-zope-location, python-zope-security)
(python-oauth2client, python-flask-script, python-flask-migrate)
(python-flask-httpauth)[home-page]: Update.
2017-12-24 00:00:50 +01:00
ng0 51cfdf90a1
gnu: suckless: Use HTTPS URLs.
All suckless.org-hosted URLs are now permanent redirects to HTTPS.

* gnu/packages/suckless.scm (blind, dwm, dmenu, slock, st, surf, sent)
[source, home-page]: Use HTTPS.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-12-24 00:00:15 +01:00
Tobias Geerinckx-Rice bbfd188f04
gnu: beets: Update to 1.4.6.
* gnu/packages/music.scm (beets): Update to 1.4.6
2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice 5e84eab06b
gnu: you-get: Explicitly invoke input ffmpeg.
The ‘ffmpeg’ input was never actually used.

* gnu/packages/video.scm (you-get)[arguments]: Add ‘qualify-input-references’
phase.
2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice 817e91bca9
gnu: you-get: Fix typo in synopsis.
* gnu/packages/video.scm (you-get)[synopsis]: Fix typo.
2017-12-23 23:57:59 +01:00
Tobias Geerinckx-Rice 8617867540
gnu: you-get: Update to 0.4.1011.
* gnu/packages/video.scm (you-get): Update to 0.4.1011.
2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice d30ac8f84b
gnu: fmt: Update to 4.1.0.
* gnu/packages/pretty-print.scm (fmt): Update to 4.1.0
[arguments]: Set ‘CMAKE_INSTALL_LIBDIR’ in #:configure-flags.
2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice 405cb5ab82
gnu: ruby-highline: Update to 1.7.10.
* gnu/packages/ruby.scm (ruby-highline): Update to 1.7.10
2017-12-23 23:57:58 +01:00
Tobias Geerinckx-Rice fae9dc7089
gnu: perl-io-socket-ip: Update to 0.38.
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.38.
2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice a36a917dac
gnu: perl-pod-simple: Mark up description.
* gnu/packages/perl.scm (perl-pod-simple)[description]: Use @code and @dfn.
2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice 427d5677c0
gnu: perl-pod-simple: Update to 3.35.
* gnu/packages/perl.scm (perl-pod-simple): Update to 3.35.
2017-12-23 23:57:57 +01:00
Tobias Geerinckx-Rice 1360b6b55a
gnu: perl-mojolicious: Update to 7.59.
* gnu/packages/perl-web.scm (perl-mojolicious): Update to 7.59.
2017-12-23 23:57:56 +01:00
Tobias Geerinckx-Rice b596306cd4
gnu: Add perl-net-dns-native.
* gnu/packages/perl.scm (perl-net-dns-native): New public variable.
2017-12-23 23:57:56 +01:00
Tobias Geerinckx-Rice 2a222b7a22
gnu: youtube-dl: Update to 2017.12.23.
* gnu/packages/video.scm (youtube-dl): Update to 2017.12.23.
2017-12-23 23:57:56 +01:00
Konrad Hinsen a08d5a07a9
gnu: Add python2-numpy-1.8.
* gnu/packages/python.scm (python2-numpy-1.8): New variable.
2017-12-23 22:35:53 +01:00
Konrad Hinsen e144cbcf85
gnu: python-numpy: Reorganize patches.
* gnu/packages/python.scm (python-numpy)[arguments]<phases>: Delete phase
"set-environment-variables".
Add phase "configure-blas-lapack". Move phase "check" after phase "install".
2017-12-23 22:32:48 +01:00
nee 916bb9470a
gnu: Add yamagi-quake2.
* gnu/packages/games.scm (yamagi-quake2): New variable.
2017-12-23 22:17:03 +01:00
ng0 6b1c3efa1c
gnu: open-adventure: Fix comment about linenoise.
* gnu/packages/games.scm (open-adventure): Fix comment.
2017-12-23 22:15:03 +01:00
ng0 bf3be6a503
gnu: ruby: Use new home page.
The certificate for ruby-lang.org is only valid for lists.ruby-lang.org,
the home page has moved to www.ruby-lang.org with its own certificate.

* gnu/packages/ruby.scm (ruby)[home-page]: Use 'www.ruby-lang.org'.
2017-12-23 22:13:43 +01:00
ng0 d6ddc5ab83
gnu: java-xz: Adjust home page.
* gnu/packages/java.scm (java-xz)[home-page]: Adjust home-page. The http part of it
is a permanent redirect to https.
2017-12-23 22:13:41 +01:00
ng0 69b7fa3e2d
gnu: xdelta: Change to new home page.
The previous used http://xdelta.com is linking to a parked/squatted domain.

* gnu/packages/compression.scm (xdelta)[home-page]: Use http://xdelta.org as
new home page.
2017-12-23 22:13:38 +01:00
ng0 58891850e5
gnu: xz: Adjust the home page.
Its http URL permanently redirects to the https one,
throwing off some basic external linters.

* gnu/packages/compression.scm (xz)[home-page]: Adjust home page.
2017-12-23 22:13:34 +01:00
Dave Love 493937ae1f
gnu: openblas: Build with LAPACK.
* gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK;
add set-extralib phase.
[inputs]: Add fortran-lib.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-12-23 20:37:40 +01:00
Efraim Flashner 6a069618ab
gnu: weechat: Disable tests on non-Intel architectures.
* gnu/packages/irc.scm (weechat)[arguments]: Disable tests on non-Intel
architectures.
2017-12-23 20:52:02 +02:00
Rutger Helling 44dd001d87
gnu: par2cmdline: Update to 0.8.0.
* gnu/packages/backup.scm (par2cmdline): Update to 0.8.0.
2017-12-23 16:25:22 +01:00
Tobias Geerinckx-Rice 90d8923bf9
doc: Properly escape brackets.
This fixes a build failure reported by Catonano <catonano@gmail.com>.

* doc/guix.texi (Mail Services): Escape ‘{’ and ‘}’ everywhere.
2017-12-23 15:40:43 +01:00
Kei Kebreau 79bffa3ec8
gnu: chicken: Update to 4.13.0.
* gnu/packages/scheme.scm (chicken): Update to 4.13.0.
[source]: Remove obsolete patches.
* gnu/packages/patches/chicken-CVE-2017-6949.patch,
gnu/packages/patches/chicken-CVE-2017-11343.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-12-23 09:18:43 -05:00
Tobias Geerinckx-Rice 28c03b4555
gnu: dovecot: Update to 2.3.0.
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.
* gnu/services/mail.scm (dovecot-configuration)[director-doveadm-port]
[ssl-parameters-regenerate]: Delete fields.
[ssl-protocols]: Rename to...
[ssl-min-protocol]: ...this.
[mail-log-prefix, mdbox-rotate-size, ssl-cipher-list, imap-logout-format]:
Update default values.
* doc/guix.texi (Mail Services): Reflect the above changes to the service.
2017-12-23 07:11:14 +01:00
Tobias Geerinckx-Rice 2f3800e53e
gnu: ruby: Use HTTPS for home pages.
* gnu/packages/ruby.scm (ruby-hoe, bundler, ruby-rjb, ruby-libxml)
(ruby-permutation, ruby-gettext, ruby-test-unit, ruby-pry, ruby-tzinfo)
(ruby-tzinfo-data, ruby-term-ansicolor, ruby-pstree, ruby-json, ruby-rack)
(ruby-yard, ruby-ansi, ruby-rubytest, ruby-brass, ruby-qed, ruby-ae)
(ruby-lemon, ruby-rubytest-cli, ruby-hashery)[home-page]: Use HTTPS.
2017-12-23 05:49:47 +01:00
Tobias Geerinckx-Rice 925131916d
gnu: ruby-tzinfo-data: Update to 1.2017.3.
* gnu/packages/ruby.scm (ruby-tzinfo-data): Update to 1.2017.3
2017-12-23 05:25:41 +01:00
Tobias Geerinckx-Rice 4237af8529
gnu: ruby-tzinfo: Update to 1.2.4.
* gnu/packages/ruby.scm (ruby-tzinfo): Update to 1.2.4
2017-12-23 05:25:32 +01:00
Tobias Geerinckx-Rice 484d68f27c
gnu: ocaml-utop: Update to 2.0.2.
* gnu/packages/ocaml.scm (ocaml-utop): Update to 2.0.2
2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 0e43721f32
gnu: ocaml-jbuilder: Update to 1.0+beta16.
* gnu/packages/ocaml.scm (ocaml-jbuilder): Update to 1.0+beta16
2017-12-23 05:09:11 +01:00
Tobias Geerinckx-Rice 36dba63b83
gnu: ocaml-ssl: Expand description.
* gnu/packages/ocaml.scm (ocaml-ssl)[description]: Expand based on Debian's.
2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 26b438e064
gnu: ocaml-ssl: Update to 0.5.5.
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.5
2017-12-23 05:09:10 +01:00
Tobias Geerinckx-Rice 7b20cd575e
gnu: ocaml-bitstring: Update to 2.1.1.
* gnu/packages/ocaml.scm (ocaml-bitstring): Update to 2.1.1
2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 50786325cd
gnu: fish: Mark up description.
* gnu/packages/shells.scm (fish)[description]: Use @command{}.
2017-12-23 05:09:09 +01:00
Tobias Geerinckx-Rice 66e86f2681
gnu: protobuf: Update to 3.5.1.
* gnu/packages/protobuf.scm (protobuf): Update to 3.5.1.
2017-12-23 04:48:17 +01:00
Kei Kebreau 84958de120
gnu: windowmaker: Enable xinerama support.
* gnu/packages/gnustep.scm (windowmaker)[inputs]: Add libxinerama.
2017-12-22 18:48:23 -05:00
Ludovic Courtès fae7973e1f
doc: Add "/guix" after LOCALSTATEDIR.
Fixes <https://bugs.gnu.org/29813>.
Reported by Martin Castillo <castilma@uni-bremen.de>.

* doc/guix.texi (Invoking guix-daemon, Invoking guix package): Add
missing "/guix" after LOCALSTATEDIR.
2017-12-23 00:05:05 +01:00