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293 Commits

Author SHA1 Message Date
Andreas Enge 93c3de921a gnu: hdf5: Fix source download location. 
* gnu/packages/maths.scm (hdf5): Use "release" directory and not the "current"
    directory for the source, which does not break on new upstream releases.
 2014-05-28 16:04:08 +02:00
John Darrington 5698b8b82c gnu: Add gsegrafix and dependent libraries. 
* gnu/packages/math.scm (gsegrafix): New variable.
* gnu/packages/gtk.scm (pangox-compat): New variable.
* gnu/packages/gnome.scm (libidl, orbit2, libbonobo, gconf, gnome-mime-data,
  gnome-vfs, libgnome, libart-lgpl, libgnomecanvas, libgnomeui, libglade,
  libgnomeprint, libgnomeprintui, libbonoboui): New variables.
 2014-05-26 18:19:55 +02:00
Eric Bavier 16ecf3ff4a gnu: Edit synopses of petsc packages. 
* gnu/packages/maths.scm (petsc) [synopsis]: Shorten.
  (petsc-complex,petsc-openmpi,petsc-complex-openmpi) [synopsis]:
  Repeat synopsis from petsc package with extensions.  [description]: Remove.
 2014-05-20 09:53:19 -05:00
Eric Bavier a54aefead6 gnu: Add superlu-dist package. 
* gnu/packages/maths.scm (superlu-dist): New variable.
* gnu/packages/patches/superlu-dist-scotchmetis.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
Eric Bavier 6acb4adb34 gnu: Add pt-scotch package. 
* gnu/packages/maths.scm (pt-scotch): New variable.
 2014-05-19 00:15:11 -05:00
Eric Bavier f8ed036a31 gnu: Add scotch package. 
* gnu/packages/maths.scm (scotch): New variable.
* gnu/packages/patches/scotch-test-threading.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-19 00:15:11 -05:00
John Darrington 7e0c23fb3e gnu: pspp: Upgrade to 0.8.3 
* gnu/packages/maths.scm (pspp): Update to 0.8.3.
 2014-05-11 13:42:49 +02:00
Eric Bavier d8c7eeb996 gnu: Add petsc-openmpi. 
* gnu/packages/maths.scm (petsc-openmpi): New variable.
  (petsc-complex-openmpi): New variable.
 2014-05-08 12:42:17 -05:00
Eric Bavier 10b11968c8 gnu: petsc: Clean some more leaked chroot references 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub some
  config-generated header files before build.  Only remove files if
  they exist.
 2014-05-08 12:42:17 -05:00
Ludovic Courtès 0e2672aee3 gnu: Add missing import in (gnu packages maths). 
* gnu/packages/maths.scm: Use (guix utils), which was needed since
  b9100e2f.
 2014-05-04 11:15:30 +02:00
Eric Bavier f5d5a346db gnu: Add missing copyright line 
* gnu/packages/maths.scm: Add copyright line missing from 3de01d3.
 2014-05-02 14:25:17 -05:00
Eric Bavier f258212df5 gnu: petsc: Add input superlu. 
* gnu/packages/maths.scm (petsc): Configure with superlu support.
 2014-05-02 14:25:17 -05:00
Eric Bavier 183e44ae44 gnu: Add superlu 
* gnu/packages/maths.scm (superlu): New variable
 2014-05-02 14:25:17 -05:00
Eric Bavier b9100e2f11 gnu: Add petsc 
* gnu/packages/maths.scm (petsc): New variable.
  (petsc-complex): New variable.
* gnu/packages/patches/petsc-fix-threadcomm.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
 2014-05-01 15:27:30 -05:00
Eric Bavier edf684ef99 gnu: gmsh: Fix typos 
* gnu/packages/maths.scm (gmsh): Fix typo and space aftern
  end-of-sentence.
 2014-04-30 14:56:52 -05:00
Eric Bavier 3de01d3fa1 gnu: Add gmsh 
* gnu/packages/maths.scm (gmsh): New variable
 2014-04-30 11:39:31 -05:00
Andreas Enge 06ed59825e guix: cmake: Add input and package libraries to the rpath, and adapt package 
definitions accordingly.

* guix/build/cmake-build-system.scm (configure): Add flags.
* gnu/packages/maths.scm (lapack): Drop special code.
* gnu/packages/ssh.scm (libssh): Drop special code.
* gnu/packages/slim.scm (slim): Drop special code and enable shared library.

Co-authored-by: Eric Bavier <bavier@member.fsf.org>
 2014-04-27 11:35:26 +02:00
Eric Bavier 57e544e8f7 gnu: lapack: Augment library rpath 
* gnu/packages/maths.scm (lapack) [arguments]: New post-installation
  phase to augment the rpath of installed libraries.
 2014-04-08 23:10:42 -05:00
Eric Bavier 8de3a57821 gnu: lapack: Build shared libraries 
* gnu/packages/maths.scm (lapack) [arguments]: Add -DBUILD_SHARED_LIBS to
  #:configure-flags
 2014-04-07 14:44:57 -05:00
Ludovic Courtès 574e86f9cf gnu: Synchronize synopses and descriptions with the Womb. 
* gnu/packages/gnunet.scm (gnunet): Synchronize description and synopsis
  with upstream.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/grub.scm (grub): Likewise.
* gnu/packages/pretty-print.scm (enscript): Likewise.
 2014-04-06 21:18:13 +02:00
Andreas Enge 983815c8b9 gnu: units: Upgrade to 2.11. 
* gnu/packages/maths.scm (units): Upgrade to 2.11.
 2014-04-03 20:54:16 +02:00
Andreas Enge 1f1c0aff26 gnu: glpk: Upgrade to 4.54. 
* gnu/packages/maths.scm (glpk): Upgrade to 4.54.
 2014-04-03 20:18:25 +02:00
Eric Bavier d4bf49b140 gnu: Remove unused lambda arguments and prefer separate phases over 
augmented phases.

* gnu/packages/compression.scm (sharutils) [arguments]: Remove unused
  lambda args.
* gnu/packages/gl.scm (mesa) [arguments]: Same
* gnu/packages/fltk.scm [arguments]: Same.  Substitute const check
  phase with #:tests? #f.  Add pre-configure phase.
* gnu/packages/ghostscript.scm (ghostscript) [arguments]: Put makefile
  patches in separate phase.  Put so steps oinseparate phases.
* gnu/packages/glib.scm (gobject-introspection) [arguments]: Remove
  unused lambda args.  Put patches in pre-configure phase.
* gnu/packages/gnupg.scm (gnupg) [arguments]: Put patch in
  pre-configure phase.
  (pius) [arguments]: Delete const #t configure and build phases.
  (signing-party) [arguments]: Factor patches into post-unpack phase.
  (paperkey) [arguments]: Remove unused lambda args.  Factor out
  patches into pre-check phase.
* gnu/packages/icu4c.scm [arguments]: Change source dir after standard
  unpack phase.  Factor configure patches into pre-configure phase.
* gnu/packages/lsof.scm [arguments]: Remove unused lambda args.
  Remove unnecessary apply.
* gnu/packages/lvm.scm (lvm2) [arguments]: Factor out patches into
  pre-configure phase.
* gnu/packages/libtiff.scm [arguments]: Same
* gnu/packages/maths.scm (hdf5) [arguments]: Same
* gnu/packages/gtk.scm (gtk+-2) [arguments]: Same
* gnu/packages/mp3.scm (libmad) [arguments]: Same
  (id3lib) [arguments]: Same
* gnu/packages/python.scm (python-2) [arguments]: Same
* gnu/packages/texlive.scm (texlive) [arguments]: Same
* gnu/packages/pretty-print.scm (a2ps) [arguments]: Same
  (trueprint) [arguments]: Same
  (source-highlight) [arguments]: Same.  Remove unused lambda args.
* gnu/packages/netpbm.scm [arguments]: Remove unused lambda args.
  Factor out test patches into pre-check phase.  Condense calls to
  substitute*
* gnu/packages/openldap.scm [arguments]: Factor out libtool copy into
  post-configure phases. [synopsis] Remove package name.
* gnu/packages/ssh.scm (openssh) [arguments]: Factor out patches into
  separate phases.
* gnu/packages/tcsh.scm [arguments]: Factor out test patches into
  pre-check phase.
* gnu/packages/version-control.scm (git) [arguments]: Factor out
  patches into post-configure phase.
* gnu/packages/vim.scm [arguments]: Same. [synopsis] Remove package
  name.
* gnu/packages/vpn.scm (openconnect) [arguments]: Put configure flags
  in #:configure-flags
 2014-03-31 10:34:17 -05:00
John Darrington 7ee3f1a208 gnu: Add hdf5. 
* gnu/packages/maths.scm (hdf5): New variable.
* gnu/packages/maths.scm (octave): New input hdf5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-02-16 23:35:37 +01:00
John Darrington 668c06acfc gnu: Add GNU Octave. 
* gnu/packages/maths.scm (octave): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-30 22:00:55 +01:00
John Darrington 73fed4f868 gnu: Add gnuplot 
* gnu/packages/maths.scm (gnuplot): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-26 21:16:55 +01:00
Andreas Enge 566146abba gnu: lapack: Update to 3.5.0. 
* gnu/packages/maths.scm (lapack): Update to 3.5.0.
 2014-01-26 13:04:03 +01:00
John Darrington e7d6f7bfa0 gnu: pspp: Upgrade to 0.8.2 
* gnu/packages/maths.scm (pspp): Update to 0.8.2.
* gnu/packages/patches/pspp-tests.patch: Deleted.
* gnu-system.am: Removed pspp-tests.patch from the manifest.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2014-01-15 21:27:41 +01:00
John Darrington e6a5ce8e67 gnu: pspp: Enabled build of the gui 
* gnu/packages/math.scm (pspp): Removed the --without-gui flag
and added the necessary inputs to build it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2013-12-02 13:51:02 +01:00
Ludovic Courtès 79c311b81c gnu: Synchronize descriptions with 'gnumaint'. 2013-12-01 22:33:23 +01:00
Ludovic Courtès 1dba64079c gnu: gettext: Rename binding to 'gnu-gettext'. 
* gnu/packages/gettext.scm (gettext): Rename to...
  (gnu-gettext): ... this.  This is used to work around the circular
  dependency introduced in commit c42a4b7, which users with a #:renamer
  cannot cope with.
* gnu/packages/acl.scm, gnu/packages/attr.scm, gnu/packages/cdrom.scm,
  gnu/packages/fdisk.scm, gnu/packages/gkrellm.scm, gnu/packages/glib.scm,
  gnu/packages/gnunet.scm, gnu/packages/grub.scm, gnu/packages/linux.scm,
  gnu/packages/maths.scm, gnu/packages/nano.scm, gnu/packages/parted.scm,
  gnu/packages/system.scm, gnu/packages/version-control.scm,
  gnu/packages/vpn.scm, gnu/packages/w3m.scm, gnu/packages/wget.scm:
  Adjust accordingly.
 2013-11-20 22:12:49 +01:00
Andreas Enge f392980041 gnu: pspp: Add input cairo. 
* gnu/packages/maths.scm (pspp): Add cairo and further necessary inputs.
* gnu/packages/patches/pspp-tests.patch: New file, thanks to
  John Darrington <john@darrington.wattle.id.au>.
* gnu-system.am (dist_patch_DATA): Register patch.
 2013-11-18 21:12:27 +01:00
Ludovic Courtès 6a9957545c gnu: lapack: Use origin snippet to remove the non-free files. 
* gnu/packages/maths.scm (lapack): Add 'snippet' field with contents of
  former 'remove-non-free-files' phase; remove that phase.
 2013-11-07 23:07:45 +01:00
Nikita Karetnikov da95c8170a gnu: Add LAPACK. 
* gnu/packages/maths.scm (lapack): New variable.
 2013-11-07 08:20:11 +00:00
Andreas Enge b92eee75b1 gnu: Add GLPK. 
* gnu/packages/maths.scm (glpk): New variable.
 2013-10-22 20:24:33 +02:00
Andreas Enge 487da56570 gnu: gsl: Update to 1.16. 
* gnu/packages/maths.scm (gsl): Update to 1.16, disable parallel tests
    leading to a failure in vector.
 2013-10-13 16:26:12 +02:00
Ludovic Courtès a22dc0c49a Synchronize package descriptions with the Womb. 
* gnu/packages/algebra.scm,
  gnu/packages/aspell.scm,
  gnu/packages/autotools.scm,
  gnu/packages/base.scm,
  gnu/packages/bash.scm,
  gnu/packages/bison.scm,
  gnu/packages/cdrom.scm,
  gnu/packages/cflow.scm,
  gnu/packages/compression.scm,
  gnu/packages/cpio.scm,
  gnu/packages/cppi.scm,
  gnu/packages/ddrescue.scm,
  gnu/packages/dejagnu.scm,
  gnu/packages/ed.scm,
  gnu/packages/emacs.scm,
  gnu/packages/fdisk.scm,
  gnu/packages/freeipmi.scm,
  gnu/packages/gawk.scm,
  gnu/packages/gcal.scm,
  gnu/packages/gcc.scm,
  gnu/packages/gdb.scm,
  gnu/packages/gdbm.scm,
  gnu/packages/gettext.scm,
  gnu/packages/ghostscript.scm,
  gnu/packages/global.scm,
  gnu/packages/gnunet.scm,
  gnu/packages/gnupg.scm,
  gnu/packages/gnutls.scm,
  gnu/packages/gperf.scm,
  gnu/packages/gprolog.scm,
  gnu/packages/groff.scm,
  gnu/packages/grub.scm,
  gnu/packages/gsasl.scm,
  gnu/packages/guile.scm,
  gnu/packages/gv.scm,
  gnu/packages/help2man.scm,
  gnu/packages/idutils.scm,
  gnu/packages/indent.scm,
  gnu/packages/less.scm,
  gnu/packages/libidn.scm,
  gnu/packages/libsigsegv.scm,
  gnu/packages/libunistring.scm,
  gnu/packages/lightning.scm,
  gnu/packages/linux.scm,
  gnu/packages/lsh.scm,
  gnu/packages/m4.scm,
  gnu/packages/mail.scm,
  gnu/packages/maths.scm,
  gnu/packages/multiprecision.scm,
  gnu/packages/nano.scm,
  gnu/packages/ncurses.scm,
  gnu/packages/nettle.scm,
  gnu/packages/ocrad.scm,
  gnu/packages/oggvorbis.scm,
  gnu/packages/parted.scm,
  gnu/packages/plotutils.scm,
  gnu/packages/pth.scm,
  gnu/packages/readline.scm,
  gnu/packages/recutils.scm,
  gnu/packages/rush.scm,
  gnu/packages/scheme.scm,
  gnu/packages/screen.scm,
  gnu/packages/shishi.scm,
  gnu/packages/smalltalk.scm,
  gnu/packages/system.scm,
  gnu/packages/texinfo.scm,
  gnu/packages/time.scm,
  gnu/packages/unrtf.scm,
  gnu/packages/version-control.scm,
  gnu/packages/wdiff.scm,
  gnu/packages/wget.scm,
  gnu/packages/which.scm,
  gnu/packages/xnee.scm,
  gnu/packages/zile.scm: Change value of the 'description' field to that
  of the Womb.
 2013-10-09 16:14:23 +02:00
Ludovic Courtès d6f10ca3fe gnu: units: Update to 2.02. 
* gnu/packages/maths.scm (units): Update to 2.02.
 2013-09-27 22:05:08 +02:00
Andreas Enge 78c7e3449f gnu: pspp: Update to 0.8.1. 
* gnu/packages/maths.scm (pspp): Update to 0.8.1.
 2013-09-25 11:08:16 +02:00
Andreas Enge 71e0f28856 gnu: gsl: Disable numerically unstable test on i686. 
* gnu/packages/maths.scm (gsl): Disable test.
 2013-08-31 12:18:53 +02:00
Andreas Enge 88bd1804a2 gnu: gsl: Move from module algebra to maths. 
* gnu/packages/algebra.scm (gsl): Move variable from here...
* gnu/packages/maths.scm (gsl): ...to here.
 2013-08-29 15:42:52 +02:00
Andreas Enge c9dfa3c721 gnu: Add pspp. 
* gnu/packages/maths.scm (pspp): New variable.
* THANKS: Thank John Darrington for help with debugging.
 2013-08-24 15:11:02 +02:00
Andreas Enge 8f8b24512a gnu: Add units. 
* gnu/packages/maths.scm: New module.
* gnu-system.am (GNU_SYSTEM_MODULES): Add module.
 2013-08-24 10:51:56 +02:00