Commit Graph

1110 Commits

Author SHA1 Message Date
Hartmut Goebel ed26b3a807
doc: Clarify description of etc-service-type.
* doc/guix.texi (Service Reference): Update 'etc-service-type'
  documentation.
2017-10-22 12:47:29 +02:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
Ricardo Wurmus e0c1d080b5
doc: Add an example to the documentation of the udev-service.
* doc/guix.texi (Base Services): Update 'udev-service' documentation.
2017-10-13 08:39:16 +02:00
Leo Famulari 91525b486c
build: Add the Go build system.
* guix/build-system/go.scm,
guix/build/go-build-system.scm: New files.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document the go-build-system.
2017-10-12 21:22:40 -04:00
Ludovic Courtès 50fcf37c13
doc: Give an example with a FAT UUID.
* gnu/system/examples/lightweight-desktop.tmpl <file-systems>: Add a
UUID for the /boot/efi partition.
* doc/guix.texi (Using the Configuration System): Mention it.
2017-10-11 11:12:33 +02:00
Oleg Pykhalov cca6941fee
pull: Add GUIX_PULL_URL environment variable.
* guix/scripts/pull.scm (%repository-url): Add GUIX_PULL_URL environment
  variable.
* doc/guix.texi (Invoking guix pull): Mention GUIX_PULL_URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-07 23:01:52 +02:00
Christopher Baines 5266ff719e
services: Add MongoDB.
* gnu/services/databases.scm (%default-mongodb-configuration-file,
  %mongodb-accounts, mongodb-service-type): New variables.
  (<mongodb-configuration>): New record type.
  (mongodb-activation, mongodb-shepherd-service): New procedures.
* gnu/tests/databases.scm (%test-mongodb): New variable.
* doc/guix.texi (Database Services): Add MongoDB documentation.
2017-10-06 21:24:30 +01:00
Julien Lepiller f403d7abdf
guix: ant-build-system: Add #:test-include and #:test-exclude arguments.
* guix/build-system/ant.scm: Add #:test-include and #:test-exclude
arguments.
* guix/build/ant-build-system.scm: Generate test list from arguments.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:38:23 +02:00
Julien Lepiller 8df1faa047
guix: ant-build-system: Add main-class support.
* guix/build-system/ant.scm: New #:main-class argument
* guix/build/ant-build-system.scm: Generate a manifest file with
additional properties.
* doc/guix.texi (Build Systems): Document it.
2017-10-03 21:37:47 +02:00
Oleg Pykhalov 032a2760ee
gnu: services: Add cgit.
* gnu/services/version-control.scm
(<cgit-configuration-file>, <cgit-configuration>): New record types.
(cgit-configuration-robots-string, cgit-activation,
cgit-configuration-nginx-config): New procedures.
(%cgit-configuration-nginx, cgit-service-type): New variables.
* gnu/tests/version-control.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Version Control): Document the cgit service.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:07:54 +02:00
Ludovic Courtès e797e94bf5
doc: Explain why synopses/descriptions must be literal strings.
Suggested by Dave Love <fx@gnu.org>.

* doc/guix.texi (Synopses and Descriptions): Recommend literal strings.
2017-10-03 17:07:54 +02:00
Thomas Danckaert 350cc3a270
doc: Fix rottlog configuration sample code.
* doc/guix.texi (Log Rotation): Correct code for the default mcron-service.
2017-09-30 18:11:12 +02:00
Oleg Pykhalov 4d14808af4
services: web: Add try-files for the nginx-service-type.
* gnu/services/web.scm (<nginx-server-configuration>): Add
  nginx-server-configuration-try-files.
(emit-nginx-server-config): Use it.
* doc/guix.texi (Web Services): Document it.
2017-09-28 20:37:40 +02:00
Ricardo Wurmus fb1db38547
import: Add JSON importer.
* doc/guix.texi (Invoking guix import): Document it.
* guix/scripts/import/json.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/scripts/import.scm (importers): Add json importer.
2017-09-28 13:10:11 +02:00
Jan Nieuwenhuizen 66bc1d2aaf
cuirass: Add gnu-system build spec.
* build-aux/hydra/gnu-system.scm (hydra-jobs): Support subset "hello".
* build-aux/cuirass/gnu-system.scm: New file.
* doc/guix.texi (Continuous Integration): Update example spec.
2017-09-27 22:19:28 +02:00
Jan Nieuwenhuizen 326f6ef10f
services: cuirass: Add host option.
* gnu/services/cuirass.scm (<cuirass-configuration>): Add host option.
(cuirass-shepherd-service): Pass host option.
* doc/guix.texi (Continuous Integration): Document it.
2017-09-26 18:15:41 +02:00
Oleg Pykhalov 9db7e9be59
gnu: Add rsync service.
* doc/guix.texi (Networking Services): Add rsync service documentation.
* gnu/services/rsync.scm (<rsync-configuration>): New file.
* gnu/tests/rsync.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add new files.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-23 21:07:27 +01:00
Ludovic Courtès 94d2a25091
services: network-manager: Add support for VPN plug-ins.
* gnu/services.scm (directory-union): Export.
* gnu/services/networking.scm (<network-manager-configuration>)[vpn-plugins]:
New field.
(vpn-plugin-directory, network-manager-environment): New procedure.
(network-manager-shepherd-service): Pass #:environment-variables to
'make-forkexec-constructor'.
(network-manager-service-type): Add SESSION-ENVIRONMENT-SERVICE-TYPE
extension.
* doc/guix.texi (Networking Services): Document it.
2017-09-22 00:05:08 +02:00
Ludovic Courtès 6ab63268e4
doc: Mention 'mkfs.fat' for the ESP.
Suggested by Hartmut Goebel <h.goebel@crazy-compilers.com>.

* doc/guix.texi (Preparing for Installation): Mention 'mkfs.fat'.
2017-09-19 23:58:24 +02:00
Peter Mikkelsen 07c101e221
build-system: Add 'meson-build-system'.
* Makefile.am (MODULES): Add 'guix/build-system/meson.scm' and
'guix/build/meson-build-system.scm'.
* guix/build-system/meson.scm: New file.
* guix/build/meson-build-system.scm: New file.
* doc/guix.texi (Build Systems): Add 'meson-build-system'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-16 18:07:00 +02:00
Ludovic Courtès 0649321d91
guix system: Add 'search' command.
* guix/scripts/system.scm (resolve-subcommand): New procedure.
(process-command): Handle 'search'.
(guix-system): Likewise.
(show-help): Augment.
* guix/scripts/system/search.scm: New file.
* po/guix/POTFILES.in: Add it.
* Makefile.am (MODULES): Add it.
* guix/ui.scm (%text-width): Export.
* doc/guix.texi (Invoking guix system): Document it.
(Service Types and Services): Mention 'guix system search'.
* tests/guix-system.sh: Test it.
2017-09-16 17:47:46 +02:00
Ludovic Courtès b714395a39
services: Add a description and location for each service type.
* gnu/services.scm (<service-type>)[description, location]: New field.
* doc/guix.texi (Service Types and Services): Document 'description'.
2017-09-16 17:47:46 +02:00
Jan Nieuwenhuizen 1c05aab473
gnu: cuirrass: Default port to 8081.
* gnu/services/cuirass.scm (<cuirass-configuration>): Default port to 8081.
  Fixes conflict with guix-publish default.
* doc/guix.texi (Continuous Integration): Update.
2017-09-13 18:33:46 +02:00
Jan Nieuwenhuizen 9bb98bcf7b
doc: Fix typo in cuirrass config example.
* doc/guix.texi (Continuous Integration): Add missing quote in example spec.
2017-09-13 18:30:00 +02:00
Ludovic Courtès 960c40de21
doc: Use Screen and OpenSSH in the bare-bones example.
* gnu/system/examples/bare-bones.tmpl (packages): Remove TCPDUMP; add
SCREEN and OPENSSH.
* doc/guix.texi (Using the Configuration System): Adjust explanation
accordingly.
2017-09-12 23:56:34 +02:00
Ludovic Courtès a9468b422b
substitute: Download from unauthorized sources that provide the right content.
This allows substitutes to be downloaded from unauthorized servers, as
long as they advertise the same hash and references as one of the
authorized servers.

* guix/scripts/substitute.scm (assert-valid-narinfo): Remove.
(valid-narinfo?): Add #:verbose?.  Handle each case of
'signature-case'.
(equivalent-narinfo?): New procedure.
(lookup-narinfos/diverse): Add 'authorized?' parameter and honor it.
[select-hit]: New procedure.
(lookup-narinfo): Add 'authorized?' parameter and pass it.
(process-query): Adjust callers accordingly.
(process-substitution): Remove call to 'assert-valid-narinfo'.  Check
whether 'lookup-narinfo' returns true and call 'leave' if not.
* tests/substitute.scm (%main-substitute-directory)
(%alternate-substitute-directory): New variables.
(call-with-narinfo): Make 'narinfo-directory' a parameter.  Call
'mkdir-p' to create it.  Change unwind handler to check whether
CACHE-DIRECTORY exists before deleting it.
(with-narinfo*): New macro.
("substitute, no signature")
("substitute, invalid hash")
("substitute, unauthorized key"): Change expected error message to "no
valid substitute".
("substitute, unauthorized narinfo comes first")
("substitute, unsigned narinfo comes first")
("substitute, first narinfo is unsigned and has wrong hash")
("substitute, first narinfo is unsigned and has wrong refs")
("substitute, unsigned narinfo comes first")
("substitute, two invalid narinfos"): New tests.
* doc/guix.texi (Substitutes): Explain the new behavior.
2017-09-11 11:10:21 +02:00
Christopher Baines c2a59a92bb
doc: Replace upstream-list with upstream-blocks.
This fixes the documentation to match the implementation.

* doc/guix.texi (Web Services): Replace 'upstream-list' with
  'upstream-blocks'.
2017-09-10 12:00:03 +01:00
Oleg Pykhalov fb1cba687e
doc: Replace server-list with server-blocks.
* doc/guix.texi (Web Services): Replace 'server-list' with 'server-blocks'.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-09-10 11:59:59 +01:00
Ludovic Courtès acc2ab65bc
doc: Update elogind URL.
* doc/guix.texi (Desktop Services): Update elogind URL.
2017-09-08 00:11:20 +02:00
Ludovic Courtès fb25508856
size: Default to '--sort=self'.
* guix/scripts/size.scm (%default-options): Change default value for
'profile<?.
* doc/guix.texi (Invoking guix size): Adjust accordingly.
2017-09-07 13:57:42 +02:00
Tobias Geerinckx-Rice 352a5b639b
services: web: Fix nginx-service-type's ‘file’ procedure.
* gnu/services/web.scm (nginx-activation, nginx-shepherd-service): Replace
references to non-existent ‘config-file’ with ‘file’.
* doc/guix.texi (Web Services): Likewise.
2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 4695472f8a
doc: Fix typo in copyright header.
* doc/guix.texi: Move stray ‘@*’ to where it belongs.
2017-09-05 20:57:13 +02:00
Maxim Cournoyer b9f67d6dda
services: Add auto-enable? parameter to the bluetooth-service.
* gnu/services/desktop.scm (bluetooth-configuration): New record.
(bluetooth-shepherd-service): Use it.
(bluetooth-directory): New method.
(bluetooth-service-type): Use it to extend the etc-service-type service.
(bluetooth-service): Add `auto-enable?' parameter.
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-09-04 15:41:24 +02:00
Ludovic Courtès 4110fbc6dd
services: '%desktop-services' uses NetworkManager instead of Wicd.
Discussed at
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00277.html>.

* gnu/services/desktop.scm (%desktop-services): Remove call to
'wicd-service'.  Add instances of NETWORK-MANAGER-SERVICE-TYPE and
WPA-SUPPLICANT-SERVICE-TYPE.
* doc/guix.texi (Networking Services): Document
'network-manager-service-type' as being part of '%desktop-services'.
(Desktop Services): Replace Wicd with NM.
2017-09-03 00:52:17 +02:00
Peter Mikkelsen b6dc69af1d
services: mpd: Remove the mpd-file field.
Since MPD switches user, the pid-file must be in a writable dir.  This
is now always /var/run/mpd/(user)/pid.

* gnu/services/audio.scm (mpd-service-type): Add a activation-service
extension.
(<mpd-configuration>)[pid-file]: Remove.
(mpd-service): Rename to...
(mpd-shepherd-service): ... this.
(mpd-file-name, mpd-service-activation): New procedure.
* doc/guix.texi (Audio Services): Document the changes.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-31 14:43:26 +02:00
Andy Wingo 063c608261
gnu: Add AccountsService service to desktop services.
* doc/guix.texi (Desktop Services): Add accountsservice-service.
* gnu/services/desktop.scm (%accountsservice-activation):
(accountsservice-service-type): New public variables.
(%desktop-services): Add accountsservice-service.
2017-08-25 16:01:56 +02:00
Andy Wingo 045ebb3e58
gnu: bootloader: Deprecate "device" field in favor of "target".
* gnu/bootloader.scm (<bootloader-configuration>): Deprecate "device" field in
favor of "target" field.  This is mostly a renaming but also a generalization
to support UEFI targets being paths to a mounted partition instead of a device
name.
* gnu/system/examples/bare-bones.tmpl:
* gnu/system/examples/desktop.tmpl:
* gnu/system/examples/lightweight-desktop.tmpl:
* gnu/system/examples/vm-image.tmpl:
* gnu/system/install.scm:
* gnu/tests.scm:
* gnu/tests/install.scm:
* gnu/tests/nfs.scm:
* tests/system.scm: Adapt all invocations of bootloader-configuration.
* guix/scripts/system.scm (perform-action): Rename device argument to
bootloader-target.
(process-action): Adapt caller.
* doc/guix.texi (Proceeding with the Installation):
* doc/guix.texi (Bootloader Configuration): Update documentation.
2017-08-23 22:23:19 +02:00
Ryan Moe e6051057ab
services: Add libvirt services
* gnu/services/virtualization.scm: New file.
* doc/guix.texi (Virtualization Services): Document it.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-23 12:47:24 +01:00
Christopher Baines 39fc3004be
web: Remove the nginx-service procedure.
Now that the service-type has a default value, and configuration record is
accessible.

* gnu/services/web.scm (nginx-service): Remove procedure.
* doc/guix.texi (Web Services): Update and improve NGinx documentation.
2017-08-22 17:49:05 +01:00
Ricardo Wurmus af735661f3
pack: Add "none" compressor.
* guix/scripts/pack.scm (%compressors): Add compressor "none"; prepend
extension with ".".
(self-contained-tarball, docker-image): Assume compressor extensions start
with period.
* doc/guix.texi (Invoking guix pack): Document it.
2017-08-19 17:59:42 +02:00
Christopher Baines 2905926285
doc: Update Database services in detailed node list.
This was updated in the Service subsection, but the matching update here was
missed.

* doc/guix.text (Top): Change database services description.
2017-08-19 11:38:06 +01:00
Danny Milosavljevic d79013f66a
maint: Create an ISO9660 installation image in the 'release' target.
* Makefile.am (GUIXSD_IMAGE_BASE): Adapt target file name.
(release): Use file-system-type iso9660.
* doc/guix.texi: Document installation from DVD.
2017-08-19 04:38:15 +02:00
Peter Mikkelsen 06465d2ba4
gnu: Add mpd service.
* doc/guix.texi: Add documentation.
* gnu/services/audio.scm (<mpd-configuration>): New record type.
  (mpd-service-type): New service type.
* gnu/tests/audio.scm: New file.
* gnu/local.mk: Add new files.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2017-08-13 07:36:32 +01:00
Christopher Baines 065225a42d
doc: Change Database Services description.
This is overly specific, as this section now includes the documentation for
Redis, which is not an SQL database.

* doc/guix.texi: Change database services description.
2017-08-12 22:08:13 +01:00
Leo Famulari 7b14c48bd2
doc: Fix typo.
* doc/guix.texi (Invoking guix pack): Fix typo.
2017-08-10 16:11:01 -04:00
Christopher Baines 91fdc8a574
services: Update the Tailon service for Tailon 1.3.0.
Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication.

* gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and
  users configuration values.
  (tailon-configuration-file-http-auth, tailon-configuration-file-users): New
  procedures.
  (tailon-configuration-file-compiler): Add support for the http-auth and
  users configuration options.
* doc/guix.texi (Monitoring Services): Document authentication for Tailon.
2017-08-09 23:50:31 +01:00
Christopher Baines f2d8e7f720
services: Add missing wrap-lines option to tailon.
* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines.
  (tailon-configuration-wrap-lines): New procedure.
  (tailon-configuration-file-compiler): Add support for wrap-lines.
* doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon
  configuration option.
2017-08-09 23:50:27 +01:00
Ricardo Wurmus 88c8f247e5
build: Add minify build system.
* guix/build-system/minify.scm: New file.
* guix/build/minify-build-system: New file.
* Makefile.am (MODULES): Add new files.
* doc/guix.texi (Build Systems): Document minify-build-system.
2017-08-04 11:23:52 +02:00
Ludovic Courtès ec5495ba3f
doc: 'patches' field of <origin> can list file-like objects.
Fixes <http://bugs.gnu.org/27165>.
Reported by sirgazil <sirgazil@zoho.com>.

* doc/guix.texi (origin Reference): 'patches' can contain file-like
objects.
2017-08-03 00:35:59 +02:00
Ludovic Courtès 59a1627518
pull: Fetch source code from Git.
* guix/scripts/pull.scm (%snapshot-url, with-environment-variable)
(with-PATH): Remove.
(ensure-guile-git!): New procedure.
(%repository-url): New variable.
(%default-options): Add 'repository-url' and 'ref'.
(show-help, %options): Add '--commit' and '--url'.
(temporary-directory, first-directory, interned-then-deleted)
(unpack): Remove.
(build-from-source): Rename 'tarball' to 'source'.  Remove call to
'unpack'.
(build-and-install): Rename 'tarball' to 'source'.
(honor-lets-encrypt-certificates!, report-git-error): New procedures.
(with-git-error-handling): New macro.
(guix-pull)[fetch-tarball]: Remove.
Wrap body in 'with-git-error-handling'.  Rewrite to use
'latest-repository-commit'.
* build-aux/build-self.scm (build): Print an error message and exit when
GUILE-GIT is #f.
* doc/guix.texi (Invoking guix pull): Mention Git.  Document '--commit'
and '--branch'.
2017-08-02 00:04:00 +02:00