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224 Commits

Author SHA1 Message Date
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 7397cd9e3f
gnu: armadillo: Update to 7.500.0. 
* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
 2016-10-26 16:23:25 +02:00
Thomas Danckaert 4b12fe5cab
gnu: coda: Remove bundled libraries. 
* gnu/packages/maths.scm (coda): Remove bundled libraries.
[source]: Add patch and snippet to remove bundled zlib, pcre and expat.
[inputs]: Add system zlib, pcre and expat.
* gnu/packages/patches/coda-use-system-libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-25 14:56:37 +02:00
Thomas Danckaert d91025e3d0
gnu: Add coda. 
* gnu/packages/maths.scm (coda): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:14:52 +02:00
Thomas Danckaert d3c4f3bb00
gnu: Add hdf-eos2. 
* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-24 23:05:20 +02:00
Mark H Weaver d2478b4cdd
Merge branch 'master' into core-updates 2016-10-19 10:54:36 -04:00
Andreas Enge 15ca49b220
gnu: hdf4: Really fix non-x86 architectures. 
This is a follow-up to commit 60da9fb110.

* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/maths.scm (hdf4)[source]: Add patch.
 2016-10-18 21:15:43 +02:00
Mark H Weaver 061d7f3bd2
Merge branch 'master' into core-updates 2016-10-13 05:53:07 -04:00
Thomas Danckaert becbbefc9b
gnu: Add hdf4 
* gnu/packages/maths.scm (hdf4, hdf4-alt): New variables.
* gnu/packages/patches/hdf4-reproducibility.patch: New file.
* gnu/packages/patches/hdf4-shared-fortran.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Co-Authored-By: Jeremy Robst <jpro@bas.ac.uk>

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-12 23:35:43 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Thomas Danckaert 0f43f8354c
gnu: Add hdf-eos5. 
* gnu/packages/maths.scm (hdf-eos5): New variable.
* gnu/packages/patches/hdf-eos5-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos5-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos5-fix-szip.patch: New file.
* gnu/packages/patches/hdf-eos5-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-10-06 18:14:45 +02:00
Leo Famulari b19c7989b7
Merge branch 'master' into core-updates 2016-10-05 19:15:25 -04:00
Leo Famulari 517318adf0
gnu: Add Vc. 
* gnu/packages/maths.scm (vc): New variable.
 2016-10-05 12:49:41 -04:00
Ludovic Courtès ab2cc5cde1
gnu: gsl: Disable failing tests on i686. 
* gnu/packages/patches/gsl-test-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (gsl)[source](patches): New field.
 2016-10-05 15:11:08 +02:00
Ludovic Courtès 8c82e1c9d3
gnu: gsl: Update to 2.2.1. 
* gnu/packages/maths.scm (gsl): Update to 2.2.1.
 2016-10-04 16:37:59 +02:00
Ludovic Courtès 0f7cd95b81
gnu: gctp: 'license' field now has a <license> value. 
* gnu/packages/maths.scm (gctp)[license]: Change to a <license> record.
 2016-10-03 23:20:23 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal. 
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
 2016-09-28 17:54:50 +03:00
Thomas Danckaert 32f70e1f86
gnu: Add gctp. 
* gnu/packages/maths.scm (gctp): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-09-27 13:37:46 -04:00
Efraim Flashner 538c0e3b69
gnu: openlibm: Remove support for mips. 
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
 2016-09-21 22:36:52 +03:00
Leo Famulari 883d0a7d25
gnu: openblas: Update to 0.2.19. 
* gnu/packages/maths.scm (openblas): Update to 0.2.19.
 2016-09-13 00:50:13 -04:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus ccd9b1511e
gnu: r-pracma: Update to 1.9.5. 
* gnu/packages/maths.scm (r-pracma): Update to 1.9.5.
[propagated-inputs]: Add "r-quadprog".
 2016-09-12 17:44:40 +02:00
Ricardo Wurmus 2d047896f9
gnu: Add r-quadprog. 
* gnu/packages/maths.scm (r-quadprog): New variable.
 2016-09-12 17:44:40 +02:00
Mark H Weaver bb76ef9d8b
Revert "gnu: gsl: Update to 2.2." 
This reverts commit b16b16e6c2.

Rationale: gsl-2.2 consistently fails its test suite on i686.  Inkscape
depends on gsl, and the grub background image is converted using
inkscape, so i686 systems can no longer be built.
 2016-09-01 20:17:01 -04:00
Efraim Flashner b16b16e6c2
gnu: gsl: Update to 2.2. 
* gnu/packages/maths.scm (gsl): Update to 2.2.
 2016-08-30 08:39:09 +03:00
Efraim Flashner b3d2be945d
Merge remote-tracking branch 'origin/master' into core-updates 2016-08-29 23:46:33 +03:00
Kei Kebreau aa127019b5
gnu: octave: Update to 4.0.3. 
* gnu/packages/maths.scm (octave): Update to 4.0.3.
[inputs]: Remove unnecessary curl, cyrus-sasl and openssl dependencies.
 2016-08-27 08:04:21 +02:00
Efraim Flashner 3c98ac0240
gnu: atlas: Update to 3.10.3. 
* gnu/packages/maths.scm (atlas): Update to 3.10.3.
 2016-08-22 10:56:03 +03:00
Efraim Flashner e5b4b96b8c
gnu: atlas: Use 'modify-phases'. 
* gnu/packages/maths.scm (atlas)[arguments]: Use 'modify-phases'.
 2016-08-19 17:41:09 +03:00
Ricardo Wurmus e04ae27bcf
gnu: openblas: Update to 0.2.18. 
* gnu/packages/maths.scm (openblas): Update to 0.2.18.
 2016-08-14 17:35:32 +02:00
Mark H Weaver 536fc5f8cd
Merge branch 'core-updates' 2016-08-04 08:17:05 -04:00
Mark H Weaver 0832787e5c
Revert "Merge branch 'core-updates'" 
This reverts commit 455859a50f.
 2016-08-04 08:16:38 -04:00
ng0 b7194849ad
Rename references to (gnu packages tcsh). 
* gnu/packages/algebra.scm, gnu/packages/boost.scm,
gnu/packages/maths.scm, gnu/packages/tex.scm, gnu/packages/vim.scm:
Change broken references to module (gnu packages tcsh) to (gnu packages
shells).
 2016-08-03 16:22:31 +02:00
Ludovic Courtès 455859a50f
Merge branch 'core-updates' 2016-08-01 23:30:52 +02:00
Mark H Weaver 3d337bbc39
Merge branch 'master' into core-updates 2016-07-31 23:27:03 -04:00
Ludovic Courtès 5e74529271
gnu: units: Update to 2.13. 
* gnu/packages/maths.scm (units): Update to 2.13.
 2016-08-01 01:11:57 +02:00
Andreas Enge 101e847294
gnu: dealii: Update to 8.4.1. 
* gnu/packages/maths.scm (dealii): Update to 8.4.1.
* gnu/packages/patches/dealii-p4est-interface.patch: Remove file.
 2016-07-31 15:22:41 +02:00
Mark H Weaver 0bab3af078
Merge branch 'master' into core-updates 2016-07-29 14:18:07 -04:00
Ludovic Courtès a3947cb1b8
gnu: Sync GNU descriptions with upstream. 
From 'guix lint -c gnu-description'.

* gnu/packages/gnunet.scm (gnunet): Adjust description.
* gnu/packages/marst.scm (marst): Likewise.
* gnu/packages/maths.scm (c-graph): Likewise.
* gnu/packages/networking.scm (macchanger): Likewise.
 2016-07-29 10:13:12 +02:00
Ludovic Courtès 5dbfbef729
gnu: lpsolve: Fix compilation issue. 
Reported by Andreas Enge <andreas@enge.fr>
at <https://lists.gnu.org/archive/html/guix-devel/2016-07/msg01018.html>.

* gnu/packages/maths.scm (lpsolve)[source]: Augment 'snippet'.
 2016-07-26 00:43:52 +02:00
Ludovic Courtès 6689d09457
gnu: lpsolve: Fail as early as possible. 
* gnu/packages/maths.scm (lpsolve)[arguments]: In 'build' phase, check
the return value of 'system*' and honor it.
 2016-07-26 00:43:52 +02:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
 2016-07-22 18:24:22 +03:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL. 
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
 2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00