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603 Commits

Author SHA1 Message Date
Tobias Geerinckx-Rice fabcbf3261
gnu: hypre: Don't use unstable tarball. 
* gnu/packages/maths.scm (hypre)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Tobias Geerinckx-Rice 90cea67111
gnu: openspecfun: Don't use unstable tarball. 
* gnu/packages/maths.scm (openspecfun)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Tobias Geerinckx-Rice 67f1db3864
gnu: muparser: Don't use unstable tarball. 
* gnu/packages/maths.scm (muparser)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-15 05:11:31 +02:00
Ricardo Wurmus 9f2a87d1bf
gnu: r-pracma: Update to 2.2.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
 2019-04-11 23:37:24 +02:00
Tobias Geerinckx-Rice ca72dd2cb5
gnu: openlibm: Don't use unstable tarball. 
* gnu/packages/maths.scm (openlibm)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:38 +02:00
Tobias Geerinckx-Rice 830971bf3a
gnu: opencascade-oce: Don't use unstable tarball. 
* gnu/packages/maths.scm (opencascade-oce)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:38 +02:00
Tobias Geerinckx-Rice 5db874d1df
gnu: gctp: Don't use unstable tarball. 
* gnu/packages/maths.scm (gctp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-04-11 05:42:37 +02:00
Ludovic Courtès adb223b8ba
gnu: scalapack: Use 'non-copyleft' as the license. 
* gnu/packages/maths.scm (scalapack)[license]: Use LICENSE:NON-COPYLEFT.
 2019-04-08 10:42:51 +02:00
Ricardo Wurmus ecfbc51faa
gnu: Add clp. 
* gnu/packages/maths.scm (clp): New variable.
 2019-04-07 21:33:03 +02:00
Marius Bakke 81866208fa
gnu: glm: Update to 0.9.9.5. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.5.
 2019-04-04 14:31:43 +02:00
Kei Kebreau 932d6e276b
gnu: wxmaxima: Update to 19.03.1. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
 2019-04-02 14:45:22 -04:00
Arun Isaac 413f61265e
gnu: Add mlucas. 
* gnu/packages/maths.scm (mlucas): New variable.
 2019-04-01 17:07:31 +05:30
Ricardo Wurmus 2a509880d4
gnu: hdf-java: Adjust indentation. 
* gnu/packages/maths.scm (hdf-java): Adjust indentation.
 2019-03-27 10:47:34 +01:00
Ricardo Wurmus 64dc8b0bfd
gnu: hdf-java: Fix build. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake;
substitute embedded hdf5 version number.
 2019-03-27 10:13:46 +01:00
Ricardo Wurmus 9286c0f7e8
gnu: hdf-java: Use INVOKE. 
* gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from
build phases.
 2019-03-27 10:12:57 +01:00
Marius Bakke 915618f2ff
gnu: glm: Update to 0.9.9.4. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.4.
 2019-03-21 19:23:48 +01:00
Tobias Geerinckx-Rice b2c52fc9ff
gnu: petsc: Update to 3.10.4. 
* gnu/packages/maths.scm (petsc): Update to 3.10.4.
 2019-03-18 22:17:37 +01:00
Tobias Geerinckx-Rice 0e36b2b7d0
gnu: gnuplot: Update to 5.2.6. 
* gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
 2019-03-18 22:17:36 +01:00
Tobias Geerinckx-Rice 98a5cd51b3
gnu: ipopt: Update to 3.12.12. 
* gnu/packages/maths.scm (ipopt): Update to 3.12.12.
 2019-03-18 21:20:31 +01:00
ng0 47956fa0c2
Correct name and email address for ng0. 
* .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi,
doc/guix.texi, etc/completion/fish/guix.fish,
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/enlightenment.scm, gnu/packages/erlang.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm,
gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm,
gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm,
gnu/packages/haskell.scm, gnu/packages/image-viewers.scm,
gnu/packages/image.scm, gnu/packages/irc.scm,
gnu/packages/language.scm, gnu/packages/libcanberra.scm,
gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm,
gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm,
gnu/packages/ncurses.scm, gnu/packages/networking.scm,
gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm, gnu/packages/python-xyz.scm,
gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm,
gnu/packages/rust.scm, gnu/packages/scheme.scm,
gnu/packages/serialization.scm, gnu/packages/shells.scm,
gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm,
gnu/packages/tor.scm, gnu/packages/version-control.scm,
gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm:
Correct name and email address for ng0.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Efraim Flashner 0ef54303f3
gnu: c-graph: Update to 2.0.1. 
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
 2019-03-07 22:00:52 +02:00
Kei Kebreau 5b8f892872
gnu: octave, octave-cli: Update to 5.1.0. 
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
 2019-03-06 09:17:33 -05:00
Ricardo Wurmus 8412fa6cc7
gnu: hypre: Remove indirect TexLive dependencies. 
* gnu/packages/maths.scm (hypre)[native-inputs]: Remove
texlive-latex-oberdiek, texlive-generic-ifxetex, and texlive-latex-url from
texlive-union.
 2019-03-01 12:55:34 +01:00
Paul Garlick 758439cf4b
gnu: python-petsc4py: Update to 10.3.1. 
* gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-02-26 17:12:29 -05:00
Tobias Geerinckx-Rice eea4a0910c
gnu: 4ti2: Update to 1.6.9. 
* gnu/packages/maths.scm (4ti2): Update to 1.6.9.
[source]: Update URI.
 2019-02-24 17:51:28 +01:00
Eric Bavier 40b114c0bb
gnu: dealii: Upgrade to 9.0.1. 
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1.  Use patch.
[arguments]: Use new MPI configuration flags.
 2019-02-13 22:39:12 -06:00
Eric Bavier 6d433d6ef7
gnu: Add ELPA. 
* gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
 2019-02-13 14:08:19 -06:00
Eric Bavier aa94524052
gnu: petsc: Upgrade to 3.10.3. 
* gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
 2019-02-13 14:08:19 -06:00
Eric Bavier f73750e6f4
gnu: scalapack: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
 2019-02-13 14:08:19 -06:00
Ludovic Courtès 50a93adc05
Merge branch 'staging' 2019-02-09 15:14:59 +01:00
Ricardo Wurmus 4714b00e7a
gnu: Add dune-pdelab. 
* gnu/packages/maths.scm (dune-pdelab): New variable.
 2019-02-08 19:15:03 +01:00
Ricardo Wurmus 85b9371cbe
gnu: Add dune-functions. 
* gnu/packages/maths.scm (dune-functions): New variable.
 2019-02-08 18:29:30 +01:00
Ricardo Wurmus 0e50630f15
gnu: Add dune-typetree. 
* gnu/packages/maths.scm (dune-typetree): New variable.
 2019-02-08 17:58:32 +01:00
Ricardo Wurmus ab03d899ca
gnu: Add dune-alugrid. 
* gnu/packages/maths.scm (dune-alugrid): New variable.
 2019-02-08 17:52:47 +01:00
Ricardo Wurmus 5a70aa7d69
gnu: Add dune-localfunctions. 
* gnu/packages/maths.scm (dune-localfunctions): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus ea51d3578c
gnu: Add dune-istl. 
* gnu/packages/maths.scm (dune-istl): New variable.
 2019-02-08 16:26:20 +01:00
Ricardo Wurmus ef6e69fdec
gnu: Add dune-grid. 
* gnu/packages/maths.scm (dune-grid): New variable.
 2019-02-08 16:26:20 +01:00
Eric Bavier 7b84610e21
gnu: hdf5: Upgrade to 1.8.21. 
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
 2019-02-07 21:20:47 -06:00
Eric Bavier 7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
 2019-02-07 21:20:47 -06:00
Eric Bavier 2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
 2019-02-07 21:20:23 -06:00
Ricardo Wurmus 242dbd8e5d
gnu: Add dune-geometry. 
* gnu/packages/maths.scm (dune-geometry): New variable.
 2019-02-07 22:36:01 +01:00
Ricardo Wurmus 3847d1f22f
gnu: Add dune-common. 
* gnu/packages/maths.scm (dune-common): New variable.
 2019-02-07 22:36:01 +01:00
Kei Kebreau d11840b43e
gnu: wxmaxima: Update to 19.01.3. 
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
 2019-02-06 12:52:27 -05:00
Kei Kebreau a4362fba0e
gnu: maxima: Update to 5.42.2. 
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
 2019-02-06 12:52:27 -05:00
Marius Bakke 0747328e31
Merge branch 'master' into staging 2019-01-31 23:32:56 +01:00
Kei Kebreau fc9c47bd7c
gnu: maxima: Patch hardcoded paths. 
* gnu/packages/maths.scm: (maxima): Patch hardcoded paths.
[arguments]: Add the phase 'patch-paths' to replace references to sed,
dirname, and head with direct references to the store.
[inputs]: Add sed.
 2019-01-26 11:04:23 -05:00
Eric Bavier 7e309e8a8d
gnu: dealii-openmpi: Setup MPI for tests. 
* gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
 2019-01-25 13:10:05 -06:00
Eric Bavier 6161141e91
superlu-dist: Upgrade to 6.1.0. 
* gnu/packages/patches/superlu-dist-awpm-grid.patch: New file.
* gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0.  Remove
extraneous 'use-modules' in snippet.
[build-system]: Change to cmake-build-system.
[propagated-inputs]:   Replace pt-scotch with pt-scotch32 to match integer
sizes.  Add "parmetis" input, from pt-scotch32.  Move lapack to ...
[inputs]: ...here.  Add openblas and combinatorial-blas.
[arguments]: Replace 'configure' phase with #:configure-flags.  Add
'set-c++-standard' and 'omp-setup' phases.  Remove
'create-install-directories, 'check', and 'install' phases, which are now
handled by cmake.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2019-01-25 13:10:05 -06:00
Eric Bavier fd3733432b
scotch: Upgrade to 6.0.6. 
* gnu/packages/maths.scm (scotch): Upgrade to 6.0.6.
[source]: Remove patches that have been fixed upstream.
[arguments]: Add 'install-metis' phase.
[outputs]: New field.
(pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase.  Use 'invoke'.
* gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch,
gnu/packages/patches/scotch-test-threading.patch: Delete files.
* gnu/packages/patches/scotch-integer-declarations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust as necessary.
 2019-01-25 13:10:05 -06:00
Eric Bavier a6b9ebc2fc
gnu: Add Combinatorial BLAS. 
* gnu/packages/maths.scm (combinatorial-blas): New variable.
* gnu/packages/patches/combinatorial-blas-awpm.patch,
gnu/packages/patches/combinatorial-blas-io-fix.patch: New files
* gnu/local.mk(dist_patch_DATA): Add them.
 2019-01-25 13:09:47 -06:00