fb94174fc3
gnu: Add pigx-bsseq.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
2018-03-11 20:01:53 +01:00
531afc8a89
gnu: Add pigx-chipseq.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
2018-03-11 20:01:53 +01:00
f2785bd657
gnu: icedtea-8: Build "out" reproducibly.
...
Partially fixes <https://bugs.gnu.org/30730 >.
* gnu/packages/java.scm (icedtea-8)[arguments]: Add phases
"patch-keystore" and "strip-jar-timestamps".
[source]: Also patch DIST_ID in "configure" script.
2018-03-11 11:53:39 +01:00
387428def1
gnu: gambit-c: Update to 4.8.9.
...
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.9.
2018-03-11 06:42:57 +01:00
1bc11c5ddb
gnu: sssd: Update to 1.16.1.
...
* gnu/packages/sssd.scm (sssd): Update to 1.16.1.
2018-03-11 06:42:57 +01:00
26cd470d3c
gnu: git-remote-gcrypt: Update to 1.0.3.
...
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.3.
2018-03-11 06:42:57 +01:00
4f55b39fa7
gnu: archivemount: Update to 0.8.9.
...
* gnu/packages/linux.scm (archivemount): Update to 0.8.9.
2018-03-11 06:42:56 +01:00
907254e513
gnu: haunt: Update to 0.2.2.
...
* gnu/packages/guile.scm (haunt): Update to 0.2.2.
2018-03-10 21:35:01 -05:00
3c90c7ae37
gnu: guile-syntax-highlight: Update to 0.1.
...
* gnu/packages/guile.scm (guile-syntax-highlight): Update to 0.1.
2018-03-10 21:35:00 -05:00
440b162900
gnu: enlightenment: Use 'loginctl' for system actions.
...
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Use
'loginctl' functions when powering off, sleeping, rebooting or
suspending the system.
2018-03-10 22:55:42 +02:00
f55aa0c7b7
gnu: zsh: Fix CVE-2018-{7548,7549}.
...
* gnu/packages/patches/zsh-CVE-2018-7548.patch,
gnu/packages/patches/zsh-CVE-2018-7549.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/shells.scm (zsh)[source]: Use them.
2018-03-10 12:30:53 -05:00
488ea71ed8
services: databases: Add postgresql-configuration record exports.
...
* gnu/services/databases.scm: Export the record type, and all the field
accessors.
2018-03-10 16:20:55 +00:00
69f7cf2bf4
tests: databases: Add a system test for PostgreSQL.
...
* gnu/tests/databases.scm (%postgresql-os, %test-postgresql): New variables.
(run-postgresql-test): New procedure.
2018-03-10 16:20:55 +00:00
936e7a5245
services: Rework the PostgreSQL config file to use a record type.
...
For the default config file representation. This makes it possible to more
easily change the configuration file, and have dynamic content.
* gnu/services/databases.scm (<postgresql-config-file>): New record type.
(%default-postgres-config): Remove this, it's been replaced by the
configuration file.
(<postgresql-configuration>): Alter the default for the config file field.
(postgresql-service): Alter the default value for the config-file parameter.
2018-03-10 16:20:52 +00:00
0fa4702c04
gnu: r-minimal: Respect SOURCE_DATE_EPOCH in srcfile.
...
Fixes <https://bugs.gnu.org/30729 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace timestamp hack
with patch to "srcfile" and "srcfilecopy".
2018-03-10 14:25:09 +01:00
8e3b852ad0
gnu: xprop: Update to 1.2.3.
...
* gnu/packages/xorg.scm (xprop): Update to 1.2.3.
2018-03-10 11:38:33 +01:00
505a65dccf
gnu: xpr: Update to 1.0.5.
...
* gnu/packages/xorg.scm (xpr): Update to 1.0.5.
2018-03-10 11:38:33 +01:00
cafda73f7e
gnu: xlsfonts: Update to 1.0.6.
...
* gnu/packages/xorg.scm (xlsfonts): Update to 1.0.6.
2018-03-10 11:38:33 +01:00
060c82c113
gnu: xkill: Update to 1.0.5.
...
* gnu/packages/xorg.scm (xkill): Update to 1.0.5.
2018-03-10 11:38:33 +01:00
19ec5a05a8
gnu: xbacklight: Update to 1.2.2.
...
* gnu/packages/xorg.scm (xbacklight): Update to 1.2.2.
2018-03-10 11:38:32 +01:00
79b0f0b7cd
gnu: xwininfo: Update to 1.1.4.
...
* gnu/packages/xorg.scm (xwininfo): Update to 1.1.4.
2018-03-10 11:38:32 +01:00
61c70e5485
gnu: xset: Update to 1.2.4.
...
* gnu/packages/xorg.scm (xset): Update to 1.2.4.
2018-03-10 11:38:32 +01:00
a4f48cc59a
gnu: xwd: Update to 1.0.7.
...
* gnu/packages/xorg.scm (xwd): Update to 1.0.7.
2018-03-10 11:38:32 +01:00
f20348549f
gnu: xlsclients: Update to 1.1.4.
...
* gnu/packages/xorg.scm (xlsclients): Update to 1.1.4.
2018-03-10 11:38:32 +01:00
dde360ecb2
gnu: xmessage: Update to 1.0.5.
...
* gnu/packages/xorg.scm (xmessage): Update to 1.0.5.
2018-03-10 11:38:31 +01:00
4a4570bea5
gnu: xinit: Update to 1.4.0.
...
* gnu/packages/xorg.scm (xinit): Update to 1.4.0.
2018-03-10 11:38:31 +01:00
873ee8a750
gnu: xwud: Update to 1.0.5.
...
* gnu/packages/xorg.scm (xwud): Update to 1.0.5.
2018-03-10 11:38:31 +01:00
fdf5257e7c
gnu: xsetroot: Update to 1.1.2.
...
* gnu/packages/xorg.scm (xsetroot): Update to 1.1.2.
2018-03-10 11:38:31 +01:00
c609ee9f55
gnu: xrefresh: Update to 1.0.6.
...
* gnu/packages/xorg.scm (xrefresh): Update to 1.0.6.
2018-03-10 11:38:31 +01:00
c5b9bde5b2
gnu: xrdb: Update to 1.1.1.
...
* gnu/packages/xorg.scm (xrdb): Update to 1.1.1.
2018-03-10 11:38:31 +01:00
7c1119aa0f
gnu: xfontsel: Update to 1.0.6.
...
* gnu/packages/xorg.scm (xfontsel): Update to 1.0.6.
2018-03-10 11:38:30 +01:00
04a937f00a
gnu: xcursor-themes: Update to 1.0.5.
...
* gnu/packages/xorg.scm (xcursor-themes): Update to 1.0.5.
2018-03-10 11:38:30 +01:00
fd2ebe1ed0
gnu: xbitmaps: Update to 1.1.2.
...
* gnu/packages/xorg.scm (xbitmaps): Update to 1.1.2.
2018-03-10 11:38:30 +01:00
0803ddf267
linux-initrd: Autoload known-module-aliases.
...
* gnu/system/linux-initrd.scm: Autoload known-module-aliases.
2018-03-10 09:23:00 +01:00
e82b61e6dd
gnu: linux-libre: Update to 4.15.8.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.8.
(%linux-libre-hash): Update hash.
2018-03-09 20:23:24 -05:00
b8605720ac
gnu: linux-libre@4.14: Update to 4.14.25.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.25.
(%linux-libre-4.14-hash): Update hash.
2018-03-09 20:22:35 -05:00
8d5c14edf5
linux-initrd: Skip initrd module check when 'modules.alias' can't be found.
...
Fixes <https://bugs.gnu.org/30760 >.
Reported by Tomáš Čech <sleep_walker@gnu.org>.
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Call
'known-module-aliases' and catch 'system-error around it. Pass it to
'matching-modules'.
2018-03-10 00:15:59 +01:00
464f544739
gnu: 'autoconf-wrapper' is no longer a procedure.
...
Fixes <https://bugs.gnu.org/30710 >.
Suggested by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* gnu/packages/autotools.scm (autoconf-wrapper): Rename to...
(make-autoconf-wrapper): ... this. Add 'properties' field.
(autoconf-wrapper): New variable.
* gnu/packages/gnunet.scm (guile-gnunet): Adjust accordingly.
* gnu/packages/gnupg.scm (signing-party): Likewise.
* gnu/packages/guile.scm (guile-ics, guile-bash): Likewise.
* gnu/packages/libevent.scm (libuv): Likewise.
* gnu/packages/logging.scm (glog): Likewise.
* gnu/packages/mail.scm (libetpan): Likewise.
* gnu/packages/mate.scm (mate-icon-theme-faenza)
(mate-screensaver): Likewise.
* gnu/packages/package-management.scm (guix): Likewise.
* gnu/packages/sawfish.scm (librep): Likewise.
* gnu/packages/video.scm (motion): Likewise.
* gnu/packages/zile.scm (zile-on-guile): Likewise.
2018-03-09 23:24:34 +01:00
ab9ad13802
gnu: linux-libre@4.1: Update to 4.1.50.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.50.
2018-03-09 16:31:32 -05:00
16bd3291a4
gnu: Update python-django-gravatar2.
...
* gnu/packages/django.scm (python-django-gravatar2)[version]: Update from
1.4.0 to 1.4.2.
[source]: Update sha256 hash.
[arguments]: Disable the tests, as the django project for the tests is
missing.
2018-03-09 18:18:48 +00:00
da90f337b3
gnu: Update python-django-filter to 1.1.0.
...
* gnu/packages/django.scm (python-django-filter)[version]: Update from 0.14.0
to 1.1.0.
[source]: Update sha256 hash.
[native-inputs]: Add python-djangorestframework and
python-django-crispy-forms as native inputs, as they are used in the test
suite.
2018-03-09 18:18:48 +00:00
cc534f0c71
gnu: Add python-django-crispy-forms.
...
* gnu/packages/django.scm (python-django-crispy-forms): New variable.
2018-03-09 18:18:48 +00:00
d5f56e9089
gnu: Add python-djangorestframework.
...
* gnu/packages/django.scm (python-djangorestframework): New variable.
2018-03-09 18:18:44 +00:00
a9079b4880
tests: mail: Add test for dovecot.
...
* gnu/tests/mail.scm (%dovecot-os, %test-dovecot): New variables.
(run-dovecot-test): New procedure.
2018-03-09 17:24:45 +03:00
6310dff1dc
services: dovecot: Copy dovecot.conf to /etc/dovecot.
...
Many Dovecot utilities compiled with assumption of ‘/etc/dovecot/dovecot.conf’
existence.
* gnu/services/mail.scm (dovecot-shepherd-service): Move config generation.
Invoke ‘dovecot’ without ‘-c’ flag.
(%dovecot-activation): Copy ‘dovecot.conf’ to ‘/etc/dovecot’.
(dovecot-service-type): Make ‘%dovecot-activation’ non-constant.
2018-03-09 17:02:31 +03:00
a539ad867d
gnu: r-rhdf5lib: Make build reproducible.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp
and host system kernel version.
2018-03-09 11:40:59 +01:00
d8f46d5234
gnu: hdf5: Do not record the build-time kernel version.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
2018-03-09 11:20:22 +01:00
1b5905fe68
gnu: r-fnn: Remove duplicate definition.
...
* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS.
* gnu/packages/statistics.scm (r-fnn): Remove.
2018-03-08 23:38:41 +01:00
22a0c65969
gnu: Add r-phangorn.
...
* gnu/packages/bioinformatics.scm (r-phangorn): New variable.
2018-03-08 23:31:56 +01:00
be815dbdda
gnu: Add r-smoother.
...
* gnu/packages/cran.scm (r-smoother): New variable.
2018-03-08 23:31:56 +01:00
Ricardo Wurmus