1adeef3194
gnu: Add dropseq-tools.
...
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
72299db9fe
gnu: Add java-picard-2.10.3.
...
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
719fa958f3
gnu: Add java-htsjdk-2.10.1.
...
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
9a599c17b7
gnu: Add java-htsjdk-latest.
...
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
9ac7db1830
gnu: Add java-biojava-alignment-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
e44da58c16
gnu: Add java-biojava-core-4.0.
...
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
22c09c335b
gnu: Add java-biojava-alignment.
...
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
b28c803708
gnu: Add java-biojava-phylo.
...
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
10645b9212
gnu: Add java-forester-1.005.
...
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
2018-03-03 21:27:44 +01:00
f09d16e594
gnu: Add java-forester.
...
* gnu/packages/bioinformatics.scm (java-forester): New variable.
2018-03-03 21:27:41 +01:00
93abc975fe
gnu: Add java-openchart2.
...
* gnu/packages/java.scm (java-openchart2): New variable.
2018-03-03 21:27:39 +01:00
5fef15e506
gnu: Add java-biojava-core.
...
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
2018-03-03 21:27:36 +01:00
dbb3581383
gnu: Add java-jdistlib.
...
* gnu/packages/statistics.scm (java-jdistlib): New variable.
2018-03-03 21:27:33 +01:00
4e92911c82
gnu: Add java-jtransforms.
...
* gnu/packages/algebra.scm (java-jtransforms): New variable.
2018-03-03 21:27:30 +01:00
24074b0bdd
gnu: Add java-jlargearrays.
...
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
2018-03-03 21:27:27 +01:00
c8d996080e
gnu: Add java-la4j.
...
* gnu/packages/algebra.scm (java-la4j): New variable.
2018-03-03 21:27:21 +01:00
bd975831c6
gnu: Add fastqc.
...
* gnu/packages/bioinformatics.scm (fastqc): New variable.
2018-03-03 21:21:48 +01:00
2f0d041816
gnu: Add java-cisd-jhdf5.
...
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
2018-03-03 21:21:48 +01:00
04ddca26e6
gnu: Add java-cisd-args4j.
...
* gnu/packages/java.scm (java-cisd-args4j): New variable.
2018-03-03 21:21:47 +01:00
30d554732a
gnu: Add java-cisd-base.
...
* gnu/packages/java.scm (java-cisd-base): New variable.
2018-03-03 21:21:47 +01:00
f9e0fcb28f
gnu: Add texlive-fonts-iwona.
...
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
2018-03-03 21:21:47 +01:00
bdcf0e6fd4
services: messaging: Prosody config supports file-like objects.
...
* doc/guix.texi (Messaging Services): Update accordingly.
* gnu/services/configuration.scm (serialize-configuration,
serialize-maybe-stem, serialize-package): Return strings or string-valued
gexps (these procedures were only used for their side-effects).
* gnu/services/messaging.scm (serialize-field, serialize-field-list,
enclose-quotes, serialize-raw-content, serialize-ssl-configuration,
serialize-virtualhost-configuration-list,
serialize-int-component-configuration-list,
serialize-ext-component-configuration-list,
serialize-virtualhost-configuration, serialize-int-component-configuration,
serialize-ext-component-configuration, serialize-prosody-configuration):
Return strings or string-valued gexps and stop printing.
(prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with
MIXED-TEXT-FILE instead of using its output with PLAIN-FILE.
(serialize-non-negative-integer, serialize-non-negative-integer-list): Convert
numbers to strings.
(file-object?, serialize-file-object, file-object-list?,
serialize-file-object-list): New procedures.
(ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths,
groups-file]: Replace FILE-NAME with FILE-OBJECT.
* guix/gexp.scm (file-like?): New exported procedure.
2018-03-03 18:21:52 +01:00
fb547c3429
gnu: dictionaries: Add copyright line.
...
* gnu/packages/dictionaries.scm: Add copyright line.
2018-03-03 14:23:17 +01:00
5e332c57d1
gnu: wireshark: Update to 2.4.5.
...
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
2018-03-03 14:21:20 +01:00
0645da3fe3
gnu: grammalecte: Update to 0.6.2.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
2018-03-03 14:06:43 +01:00
62b138caf5
gnu: Add ruby-iruby.
...
* gnu/packages/ruby.scm (ruby-iruby): New variable.
2018-03-03 12:51:27 +00:00
8279b1d3b1
gnu: Add ruby-mimemagic.
...
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
2018-03-03 12:51:26 +00:00
b03eb6acb4
gnu: Add ruby-data_uri.
...
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
2018-03-03 12:51:26 +00:00
d0afff263c
gnu: Add ruby-cztop.
...
* gnu/packages/ruby.scm (ruby-cztop): New variable.
2018-03-03 12:51:26 +00:00
fe5dd5f446
gnu: Add ruby-czmq-ffi-gen.
...
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
2018-03-03 12:51:26 +00:00
afdb437c82
gnu: Add ruby-bond.
...
* gnu/packages/ruby.scm (ruby-bond): New variable.
2018-03-03 12:51:26 +00:00
a8d2bf3cab
gnu: Add ruby-bacon-bits.
...
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
2018-03-03 12:51:26 +00:00
cf646acf96
gnu: Add ruby-mocha-on-bacon.
...
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03 12:51:25 +00:00
433dc74611
gnu: networking: Add czmq.
...
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03 12:51:23 +00:00
add928d35f
gnu: ghc-refact: Fix typo in description.
...
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
2018-03-03 13:28:22 +01:00
75377c6c48
gnu: quagga: Update to 1.2.4.
...
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
2018-03-03 13:28:22 +01:00
e6d30cf755
gnu: conky: Remove redundant MKDIR-P.
...
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
2018-03-03 13:27:17 +01:00
9d13f82da8
gnu: sslh: Update to 1.19c.
...
* gnu/packages/networking.scm (sslh): Update to 1.19c.
2018-03-03 13:27:16 +01:00
dbefd3ff72
gnu: wv: Edit description.
...
Wv is still unmaintained – this just makes it more obvious.
* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones. Align more closely with the
upstream description.
2018-03-03 13:27:16 +01:00
83a9003c5d
gnu: libseccomp: Update to 2.3.3.
...
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
2018-03-03 13:27:16 +01:00
74a2f8ff1f
gnu: hdparm: Update to 9.54.
...
* gnu/packages/linux.scm (hdparm): Update to 9.54.
2018-03-03 13:27:16 +01:00
f4009ade25
gnu: sdl2: Update to 2.0.8.
...
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03 13:27:15 +01:00
ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03 10:46:35 +01:00
fac40f38fe
gnu: r-dbi: Update to 0.8.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03 10:46:35 +01:00
081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2.
...
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
2018-03-03 10:46:35 +01:00
eac026e5c8
linux-initrd: Add virtio modules to '%base-initrd-modules'.
...
Fixes a regression in installation tests, whereby 'guix system init'
would report that virtio modules are missing for the target devices.
In practice virtio modules were always available since 'base-initrd' was
always called with #:virtio? #t. This commit simply moves them to
'%base-initrd-modules' so that 'guix system' knows they're available.
Reported by Danny Milosavljevic <dannym@scratchpost.org> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112 >.
* gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio
modules.
(base-initrd): Remove #:virtio? and 'virtio-modules'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
(system-qemu-image, virtualized-operating-system): Remove uses of
#:virtio?.
* doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
2018-03-03 09:41:21 +01:00
f850e0da8e
system: beaglebone-black: Use 'initrd-modules'.
...
* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules'
instead of 'initrd'.
2018-03-03 09:41:21 +01:00
5a3716aebf
vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd.
...
Fixes a regression introduced in
bc499b113a
2018-03-03 09:41:21 +01:00
3cb3a4e6e5
linux-initrd: 'file-system-modules' returns the right module list.
...
Fixes a bug whereby, for an "iso9660" file system, it would return
'("iso9660" "isofs"), i.e., both the key and the value.
Reported by Danny Milosavljevic <dannym@scratchpost.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115 >.
* gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns
a key/value pair; match it.
2018-03-03 09:41:21 +01:00
3ede1550e8
gnu: cutadapt: Update to 1.16.
...
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
62a4b952c0
gnu: python-xopen: Update to 0.3.2.
...
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02 23:43:55 +01:00
fa5965990d
gnu: Add r-hpar.
...
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02 23:24:57 +01:00
2a112be09a
gnu: Add r-powerplus.
...
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02 23:07:26 +01:00
d976454c6b
gnu: Add r-np.
...
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02 23:07:20 +01:00
7b81a7eabf
gnu: Add r-phontools.
...
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02 23:07:12 +01:00
68b6a67e94
gnu: Add r-complexplus.
...
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02 23:07:04 +01:00
f96eda90d5
gnu: Add r-expm.
...
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02 23:06:57 +01:00
7531ee842c
gnu: Add r-trend.
...
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02 23:06:50 +01:00
d32e572489
gnu: Add r-cubature.
...
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02 23:06:41 +01:00
6615a36421
gnu: Add r-urca.
...
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02 23:06:33 +01:00
5b25bc55dc
gnu: Add r-fractal.
...
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02 23:06:26 +01:00
19da7fe314
gnu: Add r-extradistr.
...
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02 23:06:17 +01:00
4993a02ad7
gnu: Add r-tsa.
...
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02 23:06:10 +01:00
a2c079a780
gnu: Add r-wmtsa.
...
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02 23:06:00 +01:00
b6dc325538
gnu: Add r-tseries.
...
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02 23:05:52 +01:00
dceb159206
gnu: Add r-quantmod.
...
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02 23:05:43 +01:00
0be7effefa
gnu: Add r-sapa.
...
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02 23:05:35 +01:00
034ac9d67a
gnu: Add r-ifultools.
...
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02 23:05:14 +01:00
d3cb62e58d
gnu: Add r-splus2r.
...
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02 23:05:02 +01:00
0b64332c74
gnu: Add r-leaps.
...
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02 23:03:10 +01:00
93c21ddc86
gnu: Add r-ttr.
...
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02 22:55:10 +01:00
4e35c4290e
gnu: Add r-rbiofabric.
...
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02 22:23:18 +01:00
1088744d87
gnu: Add r-sna.
...
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02 22:23:18 +01:00
07a2f34d5c
gnu: Add r-statnet-common.
...
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02 22:23:18 +01:00
5f4565b18f
gnu: Add r-network.
...
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02 22:23:18 +01:00
b01a1b34f2
gnu: nghttp2: Update to 1.31.0.
...
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02 15:52:57 +01:00
6fda93e6c8
gnu: libpsl: Update to 0.20.1.
...
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02 15:52:57 +01:00
5658b4ce69
gnu: zerofree: Update to 1.1.1.
...
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02 15:52:57 +01:00
a40f732bb6
gnu: python-webencodings: Fix typo in description.
...
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02 15:52:57 +01:00
139ecdee8e
gnu: delta: Remove redundant code.
...
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
2018-03-02 15:52:56 +01:00
defe0282c2
gnu: perl-mozilla-ca: Update to 20180117.
...
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02 15:52:56 +01:00
dc8584d2b1
gnu: perl-test-harness: Update to 3.41.
...
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02 15:52:56 +01:00
6e48fbb19a
gnu: highlight: Don't hard-code Lua version.
...
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
2018-03-02 15:52:56 +01:00
3a5c02777d
gnu: highlight: Update to 3.42.
...
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02 15:52:55 +01:00
467834d550
gnu: ghc-abstract-deque: Fix typos in description.
...
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02 15:52:55 +01:00
d338321ddb
gnu: qscintilla: Use HTTPS home page.
...
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02 15:52:55 +01:00
2c1cc27f8f
gnu: fortify-headers: Update to 0.9.
...
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02 15:52:55 +01:00
5c0f68e844
gnu: fossil: Update phase style.
...
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
2018-03-02 15:52:54 +01:00
f136c8f23d
gnu: gnome-mpv: Update to 0.14.
...
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02 15:52:54 +01:00
65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE.
...
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02 15:52:54 +01:00
f563d19904
gnu: ovmf: Update phase style.
...
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
2018-03-02 15:52:54 +01:00
0dae492195
gnu: ovmf: Use HTTPS home page.
...
* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
2018-03-02 15:52:54 +01:00
3ebf12ea0e
gnu: b43-tools: Use HTTPS home page.
...
* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
2018-03-02 15:52:53 +01:00
315c89f5ba
gnu: b43-tools: Update phase style.
...
* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE
for SYSTEM* and FOR-EACH for EVERY, and end phases with #t.
2018-03-02 15:52:53 +01:00
bb5c358204
gnu: b43-tools: Update to 0.0.0-1.27892ef.
...
* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef.
[version]: Use our standard versioning scheme.
2018-03-02 15:52:53 +01:00
12adfdf0b6
gnu: Update (gnu packages python-web) phase styles.
...
* gnu/packages/python-web.scm (python-openid, python-terminado)
(python-geventhttpclient, python-cachecontrol, python-webencodings)
(python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end
phases with #t.
2018-03-02 15:52:53 +01:00
6a192184ec
gnu: python-flask-script: Update to 2.0.6.
...
* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6.
2018-03-02 15:52:52 +01:00
05075433a2
gnu: python-htmlmin: Update to 0.1.12.
...
* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12.
2018-03-02 15:52:52 +01:00
bda82eff18
gnu: python-s3transfer: Update to 0.1.13.
...
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13.
2018-03-02 15:52:52 +01:00
e46dd02d99
gnu: python-webtest: Update to 2.0.29.
...
* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29.
2018-03-02 15:52:52 +01:00
6f21aca728
gnu: python-ndg-httpsclient: Update to 0.4.4.
...
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4.
2018-03-02 15:52:51 +01:00
3c5658c596
gnu: python-cssutils: Update to 1.0.2.
...
* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2.
2018-03-02 15:52:51 +01:00
1a6fb8dac1
gnu: python-flask-babel: Update to 0.11.2.
...
* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2.
2018-03-02 15:52:51 +01:00
424cea8083
guix system: Check for the lack of modules in the initrd.
...
* guix/scripts/system.scm (check-mapped-devices): Take an OS instead of
a list of <mapped-device>. Pass #:needed-for-boot? and #:initrd-modules
to CHECK.
(check-initrd-modules): New procedure.
(perform-action): Move 'check-mapped-devices' call first. Add call to
'check-initrd-modules'.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): New
procedure.
(check-luks-device): Add #:initrd-modules and #:needed-for-boot?. Use
them to call 'check-device-initrd-modules'.
2018-03-02 13:53:15 +01:00
bc499b113a
system: Add 'initrd-modules' field.
...
* gnu/system.scm (<operating-system>)[initrd-modules]: New field.
(operating-system-initrd-file): Pass #:linux-modules to 'make-initrd'.
* gnu/system/linux-initrd.scm (default-initrd-modules): New procedure.
(%base-initrd-modules): New macro.
(base-initrd): Add #:linux-modules and honor it.
* gnu/system/install.scm (embedded-installation-os): Use
'initrd-modules' instead of 'initrd'.
* gnu/tests/install.scm (%raid-root-os): Likewise.
* doc/guix.texi (operating-system Reference): Add 'initrd-modules'.
(Initial RAM Disk): Document it. Adjust example to not use
#:extra-modules.
2018-03-02 13:53:10 +01:00
615a89e310
linux-initrd: Separate file system module logic.
...
* gnu/system/linux-initrd.scm (vhash, lookup-procedure): New macros.
(file-system-type-modules, file-system-modules): New procedures.
(base-initrd)[cifs-modules, virtio-9p-modules]: Remove.
[file-system-type-predicate]: Remove.
Use 'file-system-modules' instead of 'find' +
'file-system-type-predicate'.
2018-03-02 13:46:45 +01:00
8661ad2743
linux-modules: Add 'device-module-aliases' and related procedures.
...
* gnu/build/linux-modules.scm (readlink*, stat->device-major)
(stat->device-minor): New procedures.
(%not-slash): New variable.
(read-uevent, device-module-aliases, read-module-aliases)
(current-alias-file, known-module-aliases, matching-modules): New
procedures.
2018-03-02 13:46:33 +01:00
99654a1685
gnu: icecat: Add more fixes from upstream mozilla-esr52.
...
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2018-03-02 01:31:30 -05:00
8863f2f051
gnu: icecat: Update to 52.6.0-gnu1.
...
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-03-02 01:31:19 -05:00
703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].
...
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
2018-03-01 20:01:48 -05:00
bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058].
...
* gnu/packages/databases.scm (postgresql): Update to 10.3.
2018-03-01 20:01:48 -05:00
e9802319f7
gnu: memcached: Update to 1.5.6.
...
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
2018-03-01 20:00:12 -05:00
da525e714a
gnu: linux-libre: Update to 4.15.7.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7.
(%linux-libre-hash): Update hash.
2018-03-01 17:59:21 -05:00
433765e599
gnu: linux-libre@4.14: Update to 4.14.23.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23.
(%linux-libre-4.14-hash): Update hash.
2018-03-01 17:58:35 -05:00
8b1f76c443
gnu: linux-libre@4.9: Update to 4.9.85.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
2018-03-01 17:58:04 -05:00
5026696033
gnu: linux-libre@4.4: Update to 4.4.119.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
2018-03-01 17:57:22 -05:00
8147d7c675
gnu: php: Fix test failure.
...
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-03-01 22:25:28 +01:00
738aa0ca1d
gnu: sdcc: Fix typo in description.
...
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo. Add
hyphens.
2018-03-01 22:21:02 +01:00
1ff14bf2cd
gnu: sdcc: Update to 3.7.0.
...
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
2018-03-01 22:21:02 +01:00
bb47da4a6a
gnu: php: Update to 7.2.3.
...
* gnu/packages/php.scm (php): Update to 7.2.3.
2018-03-01 22:21:01 +01:00
a9c0a133c0
gnu: python-stem: Update to 1.6.0.
...
* gnu/packages/python.scm (python-stem): Update to 1.6.0.
[arguments]: Add ‘fix-test-environment’ phase.
2018-03-01 22:21:01 +01:00
68e7632db0
gnu: onionshare: Update phase style.
...
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
fbb0164a5f
gnu: privoxy: Update phase style.
...
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
66b89ee28e
gnu: python-stem: Update phase style.
...
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
2018-03-01 22:21:00 +01:00
57c734a628
gnu: liblo: Update to 0.29.
...
* gnu/packages/audio.scm (liblo): Update to 0.29.
2018-03-01 22:21:00 +01:00
4972f9cc0a
gnu: nagios: Update to 4.3.4.
...
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
2018-03-01 22:21:00 +01:00
4f5452ab3a
gnu: libftdi: Use HTTPS home page.
...
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
2018-03-01 22:21:00 +01:00
7314a5475e
gnu: dbacl: Use HTTPS home page.
...
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
2018-03-01 22:20:59 +01:00
db317b38dc
gnu: dbacl: Update phase style.
...
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-01 22:20:59 +01:00
b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32.
...
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
2018-03-01 21:32:36 +01:00
b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
2018-03-01 21:28:54 +01:00
bfae3f7121
gnu: r-lubridate: Update to 1.7.3.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
2018-03-01 21:28:53 +01:00
eaf0905970
gnu: r-tidyselect: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
2018-03-01 21:28:53 +01:00
35d12b05f0
gnu: r-rmarkdown: Update to 1.9.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
2018-03-01 21:28:53 +01:00
dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
2018-03-01 21:28:53 +01:00
36e1202b2c
gnu: r-yaml: Update to 2.1.17.
...
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
2018-03-01 21:28:53 +01:00
e3ddb56329
gnu: r-gdtools: Update to 0.1.7.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
2018-03-01 21:28:53 +01:00
e24ccf46f1
gnu: r-rpart: Update to 4.1-13.
...
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
2018-03-01 21:28:53 +01:00
744e06e717
gnu: r-mass: Update to 7.3-49.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
2018-03-01 21:28:53 +01:00
29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14.
...
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01 21:28:53 +01:00
5e38673455
gnu: r-pillar: Update to 1.2.1.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
2018-03-01 21:28:53 +01:00
9d6f392529
gnu: r-truncnorm: Update to 1.0-8.
...
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
2018-03-01 21:28:53 +01:00
9aaf2813e2
gnu: r-scran: Update to 1.6.8.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
2018-03-01 21:28:53 +01:00
6a0e13906b
gnu: r-wgcna: Update to 1.63.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
2018-03-01 21:28:53 +01:00
61cbd49b30
gnu: r-topgo: Update to 2.30.1.
...
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
2018-03-01 21:28:53 +01:00
535014ce60
gnu: r-genomicranges: Update to 1.30.3.
...
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01 21:28:53 +01:00
eb8971b742
gnu: r-limma: Update to 3.34.9.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01 21:28:53 +01:00
22d96920d3
gnu: r-edger: Update to 3.20.9.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01 21:28:53 +01:00
99e4b11d81
gnu: r-shortread: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
b180893289
gnu: r-dexseq: Update to 1.24.3.
...
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01 21:28:52 +01:00
360ea2bbd5
gnu: efl: Use separate "include" output.
...
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01 22:19:37 +02:00
40a7997e63
gnu: efl: Update to 1.20.7.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01 22:18:58 +02:00
643817e445
gnu: Add patchmatrix.
...
* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01 21:12:59 +01:00
1debc5b9d2
gnu: ghc-uuid: Fix build.
...
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
2018-03-01 21:11:43 +01:00
04e7b1e7f9
gnu: golly: Fix source url.
...
* gnu/packages/games.scm (golly): Fix source url.
2018-03-01 11:19:56 -06:00
52fb59ef25
gnu: imagemagick: Update to 6.9.9-36.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
2018-03-01 17:40:49 +01:00
fe29681717
gnu: libe-book: Update to 0.1.3.
...
* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
2018-03-01 17:40:49 +01:00
814bc35d55
gnu: libabw: Update to 0.1.2.
...
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
2018-03-01 17:40:48 +01:00
c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4.
...
* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
9ed31fca81
gnu: libmspub: Update to 0.1.4.
...
* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
789445a10a
gnu: xorgproto: Update to 2018.4.
...
* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
2018-03-01 17:40:48 +01:00
21b5fc253e
gnu: cuirass: Update to aa4c778.
...
* gnu/packages/ci.scm (cuirass): Update to aa4c778.
2018-03-01 17:38:55 +01:00
35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2.
...
* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-01 14:00:21 +01:00
acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5
...
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.
Fixes <https://bugs.gnu.org/30662 >.
* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
2018-02-28 23:43:23 -05:00
2adfe819f0
gnu: Remove duplicate definition of emacs-esxml.
...
* gnu/packages/emacs.scm (emacs-esxml): Remove.
2018-02-28 23:05:06 +01:00
c1d2236569
gnu: Remove emacs-nov.
...
The package already exists with the name "emacs-nov-el".
* gnu/packages/emacs.scm (emacs-nov): Remove.
2018-02-28 23:05:06 +01:00
201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke.
...
* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke.
...
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
1b6bc51675
gnu: java-lz4: Use invoke.
...
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
ec32bc9860
gnu: antlr3-3.1: Remove version from package name.
...
* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
2018-02-28 23:05:06 +01:00
13f38d31a4
gnu: antlr3-3.1: Use invoke.
...
* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
e85c1bf6cd
gnu: java-jansi-native: Simplify.
...
* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
2018-02-28 23:05:06 +01:00
3d6925ef51
gnu: java-jansi-native: Fix description.
...
* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
2018-02-28 23:05:06 +01:00
6338ea9a88
gnu: java-hawtjni: Simplify build phases.
...
* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
2018-02-28 23:05:05 +01:00
080d0b605a
gnu: java-commons-jexl-2: Use invoke.
...
* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
2018-02-28 23:05:05 +01:00
8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-".
...
* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
2018-02-28 23:05:05 +01:00
3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819.
...
* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
2018-02-28 23:05:05 +01:00
8333c206a9
gnu: java-jnacl: Simplify build phase.
...
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
2018-02-28 23:05:05 +01:00
e158642816
gnu: java-jnacl: Correct license.
...
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
2018-02-28 23:05:05 +01:00
602f54f436
gnu: java-jnacl: Use invoke.
...
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
2018-02-28 23:05:05 +01:00
f201b18ed7
gnu: Add java-ecj-3.5.
...
* gnu/packages/java.scm (java-ecj-3.5): New variable.
2018-02-28 23:05:05 +01:00
c1cb857645
gnu: Add java-ecj-3.
...
* gnu/packages/java.scm (java-ecj-3): New variable.
2018-02-28 23:05:05 +01:00
9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461].
...
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 22:58:23 +01:00
4321aeb6d3
gnu: html-xml-utils: Update to 7.6.
...
* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
2018-02-28 22:58:23 +01:00
0828bd82bd
gnu: libftdi: Update to 1.4.
...
* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
2018-02-28 22:58:23 +01:00
30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2.
...
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
2018-02-28 22:58:23 +01:00
aa08ab38cd
gnu: dropbear: Update to 2018.76.
...
* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
2018-02-28 22:58:23 +01:00
649eb8b567
gnu: Add sala.
...
* gnu/packages/password-utils.scm (sala): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-28 22:47:48 +01:00
3c14e7e6bb
linux-modules: Use 'load-linux-module/fd'.
...
This should be more efficient than loading the whole thing in user space.
* gnu/build/linux-modules.scm (load-linux-module*): Use
'load-linux-module/fd' instead of 'load-linux-module'. Remove 'slurp'.
2018-02-28 22:47:48 +01:00
4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper.
...
* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
2018-02-28 22:47:48 +01:00
63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal.
...
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB. Now
the closure size is down to 45.7 MiB.
Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html >.
* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
2018-02-28 22:47:48 +01:00
bcc6551083
gnu: ccl: Patch absolute file-name.
...
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
2018-02-28 22:11:21 +02:00
da1b30bd93
gnu: keepassxc: Enable various plugins.
...
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
configure-flags to enable favicons, browser integration and ssh-agent.
[inputs]: Add curl, libsodium.
2018-02-28 22:11:21 +02:00
3374dcc78c
gnu: keepassxc: Update to 2.3.0.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.0.
2018-02-28 22:11:17 +02:00
53453d7acc
gnu: wavpack: Fix CVE-2018-6767.
...
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
2018-02-28 20:29:46 +01:00
6b3ee23b7a
gnu: ldb: Update to 1.3.2.
...
* gnu/packages/samba.scm (ldb): Update to 1.3.2.
2018-02-28 20:17:31 +01:00
954b677195
gnu: p11-kit: Update to 0.23.10.
...
* gnu/packages/tls.scm (p11-kit): Update to 0.23.10.
2018-02-28 20:13:41 +01:00
f03ec1e595
gnu: feh: Update to 2.24.
...
* gnu/packages/image-viewers.scm (feh): Update to 2.24.
2018-02-28 20:01:03 +01:00
6f45e45d4d
gnu: Add youtube-viewer.
...
* gnu/packages/video.scm (youtube-viewer): New public variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
b5bbcda3ee
gnu: Add perl-gtk2.
...
* gnu/packages/gtk.scm (perl-gtk2): New public variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
ee6911c7c0
gnu: Add perl-pango.
...
* gnu/packages/gtk.scm (perl-pango): New public variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
451f6e30eb
gnu: Add perl-glib.
...
* gnu/packages/glib.scm (perl-glib): New public variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
4e028d7ad2
gnu: Add perl-cairo.
...
* gnu/packages/gtk.scm (perl-cairo): New public variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
b0a2c9cbe9
gnu: python-webencodings: Update to 0.5.1.
...
* gnu/packages/python-web.scm (python-webencodings): Update to 0.5.1.
2018-02-28 16:02:55 +01:00
4ef80b2f58
gnu: python-html5lib: Update to 1.0.1.
...
* gnu/packages/python-web.scm (python-html5lib): Update to 1.0.1.
2018-02-28 16:01:43 +01:00
a846f29dff
gnu: python-netifaces: Update to 0.10.6.
...
* gnu/packages/python.scm (python-netifaces): Update to 0.10.6.
[source](uri): Use PYPI-URI.
[home-page]: Update.
2018-02-28 15:40:44 +01:00
fb2477f6d2
gnu: python-psutil: Update to 5.4.3.
...
* gnu/packages/python.scm (python-psutil): Update to 5.4.3.
[properties]: Declare python2 variant.
(python2-psutil): Propagate PYTHON2-ENUM34.
2018-02-28 14:17:55 +01:00
836de07a47
gnu: python-wrapt: Update to 1.10.11.
...
* gnu/packages/python.scm (python-wrapt): Update to 1.10.11.
2018-02-28 13:59:03 +01:00
f8a4547c29
gnu: python-oslo.log: Update to 3.36.0.
...
* gnu/packages/openstack.scm (python-oslo.log): Update to 3.36.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove.
[propagated-inputs]: Add PYTHON-DATEUTIL, PYTHON-MONOTONIC, PYTHON-PBR and
PYTHON-PYINOTIFY.
[native-inputs]: Remove PYTHON-BABEL, PYTHON-ISO8601 and PYTHON-PBR. Add
PYTHON-SUBUNIT, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:03 +01:00
db3e631db8
gnu: python-monotonic: Update to 1.4.
...
* gnu/packages/time.scm (python-monotonic): Update to 1.4.
[source]: Use PYPI-URI.
[arguments]: Explicitly disable tests.
2018-02-28 13:59:03 +01:00
2441239842
gnu: python-msgpack: Run the tests.
...
* gnu/packages/python.scm (python-msgpack)[arguments]: Add #:modules. Replace
CHECK-PHASE with pytest invocation.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-28 13:59:03 +01:00
0075644662
gnu: python-msgpack: Update to 0.5.6.
...
* gnu/packages/python.scm (python-msgpack): Update to 0.5.6.
[source, home-page]: Adjust to msgpack-python->msgpack rename.
2018-02-28 13:59:02 +01:00
caf3713ad5
gnu: python-oslo.serialization: Update to 2.24.0.
...
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.24.0.
[arguments]: Remove field.
[propagated-inputs]: Remove PYTHON-ISO8601 and PYTHON-SIMPLEJSON. Add
PYTHON-MSGPACK.
[native-inputs]: Remove PYTHON-BABEL.
[properties]: New field.
(python2-oslo.serialization)[native-inputs]: Add PYTHON2-IPADDRESS.
2018-02-28 13:59:02 +01:00
32bb0c617b
gnu: python-oslo.context: Update to 2.20.0.
...
* gnu/packages/openstack.scm (python-oslo.context): Update to 2.20.0.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR and PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-COVERAGE, PYTHON-MOCK,
PYTHON-OS-CLIENT-CONFIG, PYTHON-OSLOSPHINX and PYTHON-SPHINX. Add
PYTHON-FIXTURES.
2018-02-28 13:59:02 +01:00
24f4400aa6
gnu: Add python-pyinotify.
...
* gnu/packages/python.scm (python-pyinotify, python2-pyinotify): New
variables.
2018-02-28 13:59:02 +01:00
b51fbd6d6e
gnu: python-oslo.utils: Update to 3.35.0.
...
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.35.0.
[source](snippet): Remove.
[propagated-inputs]: Add PYTHON-PYPARSING.
[native-inputs]: Add PYTHON-DDT, PYTHON-FIXTURES, PYTHON-TESTREPOSITORY and
PYTHON-TESTTOOLS. Remove PYTHON-MOX3.
2018-02-28 13:59:02 +01:00
9e4546a2be
gnu: python-oslo.config: Update to 5.2.0.
...
* gnu/packages/openstack.scm (python-oslo.config): Update to 5.2.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR, PYTHON-OSLO.I18N, PYTHON-PBR,
PYTHON-RFC3986 and PYTHON-PYYAML.
[native-inputs]: Remove PYTHON-PBR and PYTHON-I18N. Add PYTHON-BANDIT,
PYTHON-COVERAGE, PYTHON-OPENSTACKDOCSTHEME, PYTHON-RENO, PYTHON-SPHINX-1.6,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:02 +01:00
a2803e206b
gnu: python-debtcollector: Update to 1.19.0.
...
* gnu/packages/openstack.scm (python-debtcollector): Update to 1.19.0.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-BABEL. Add PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
[properties]: Declare python2 variant.
(python2-debtcollector)[propaged-inputs]: Add PYTHON-FUNCSIGS.
2018-02-28 13:59:02 +01:00
c822e880fe
gnu: python-oslo.i18n: Update to 3.19.0.
...
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.19.0.
[arguments]: Remove field.
2018-02-28 13:59:01 +01:00
231bd07e8d
gnu: python-bandit: Update to 1.4.0.
...
* gnu/packages/openstack.scm (python-bandit): Update to 1.4.0.
[source](uri): Use PYPI-URI.
[arguments]: Run CHECK-PHASE after INSTALL-PHASE.
[propagated-inputs]: Remove PYTHON-APPDIRS. Add PYTHON-GITPYTHON.
[native-inputs]: Remove PYTHON-PBR. Add PYTHON-BEAUTIFULSOUP4,
PYTHON-OSLOTEST and PYTHON-SUBUNIT.
2018-02-28 13:59:01 +01:00
8e6177204e
gnu: Add python-gitpython.
...
* gnu/packages/version-control.scm (python-gitpython, python2-gitpython): New
public variables.
2018-02-28 13:59:01 +01:00
ea4be20af0
gnu: Add python-gitdb.
...
* gnu/packages/version-control.scm (python-gitdb, python2-gitdb): New public
variables.
2018-02-28 13:59:01 +01:00
1cccdca231
gnu: python-stevedore: Update to 1.28.0.
...
* gnu/packages/openstack.scm (python-stevedore): Update to 1.28.0.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-DISCOVER, PYTHON-DOCUTILS,
PYTHON-OSLOSPHINX and PYTHON-OSLOTEST. Replace PYTHON-SPHINX with
PYTHON-SPHINX-1.6.
2018-02-28 13:59:01 +01:00
3e3302acc5
gnu: Add python-rfc3986.
...
* gnu/packages/python.scm (python-rfc3986, python2-rfc3986): New public
variables.
2018-02-28 13:59:01 +01:00
79d9effa51
gnu: python2-stevedore: Enable tests.
...
* gnu/packages/openstack.scm (python-stevedore)[properties]: Remove.
(python2-stevedore)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
8fa28808a6
gnu: python-oslo.context: Enable tests.
...
* gnu/packages/openstack.scm (python-oslo.context)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
39033c8f57
gnu: python2-bandit: Enable tests.
...
* gnu/packages/openstack.scm (python-bandit)[properties]: Remove.
(python2-bandit): Don't use STRIP-PYTHON2-VARIANT.
2018-02-28 13:59:00 +01:00
0ab4c39285
gnu: python2-swiftclient: Enable tests.
...
* gnu/packages/openstack.scm (python-swiftclient)[properties]: Declare python2
variant.
(python2-swiftclient): Use STRIP-PYTHON2-VARIANT.
[propagated-inputs]: Remove PYTHON2-REQUESTS.
[arguments]: Remove.
[native-inputs]: Delete.
2018-02-28 13:59:00 +01:00
b39667cdcb
gnu: python-mox3: Update to 0.24.0.
...
* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0.
[source](patches): New field.
[arguments]: Remove.
[native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT. Replace
PYTHON-SPHINX with PYTHON-SPHINX-1.6. Move PYTHON-PBR and PYTHON-FIXTURES ...
[propagated-inputs]: ... here. New field.
[description]: Don't mention explicit Python versions.
* gnu/packages/patches/python-mox3-python3.6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-02-28 13:59:00 +01:00
7a565dc9ec
gnu: Add python-openstackdocstheme.
...
* gnu/packages/openstack.scm (python-openstackdocstheme,
python2-openstackdocstheme): New public variables.
2018-02-28 13:59:00 +01:00
3719d0edf2
gnu: python-sphinx@1.6: Add python2 variant.
...
* gnu/packages/python.scm (python-sphinx-1.6)[properties]: Declare python2 variant.
(python2-sphinx-1.6): New public variable.
2018-02-28 13:58:43 +01:00
9c77852e19
gnu: python-fixtures: Update to 3.0.0.
...
* gnu/packages/check.scm (python-fixtures-bootstrap): Update to 3.0.0.
2018-02-28 13:58:43 +01:00
d2ae66b756
gnu: python-reno: Update to 2.7.0.
...
* gnu/packages/openstack.scm (python-reno): Update to 2.7.0.
[propagated-inputs]: Remove PYTHON-BABEL. Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-OSLOTEST. Add PYTHON-DOCUTILS
and PYTHON-SPHINX.
2018-02-28 13:58:43 +01:00
be3f88c29c
gnu: python-oslotest: Update to 3.2.0.
...
* gnu/packages/openstack.scm (python-oslotest): Update to 3.2.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Move PYTHON-OS-CLIENT-CONFIG, PYTHON-SIX, PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS ...
[propagated-inputs]: ... here.
[properties]: Remove field.
(python2-oslotest)[arguments]: Remove.
2018-02-28 13:58:43 +01:00
ae565a9a6d
gnu: python-testscenarios: Update to 0.5.0.
...
* gnu/packages/check.scm (python-testscenarios-bootstrap): Update to 0.5.0.
[source](uri): Use PYPI-URI.
[arguments]: Replace CHECK-PHASE.
[propagated-inputs]: Add PYTHON-PBR-MINIMAL.
(python-testscenarios)[propagated-inputs]: Add PYTHON-PBR.
2018-02-28 13:58:43 +01:00
8b93f7e437
gnu: python-testtools: Update to 2.3.0.
...
* gnu/packages/check.scm (python-testtools-bootstrap,
python2-testtools-bootstrap): New public variables.
(python-testtools): Inherit.
[arguments]: Remove old. Replace CHECK-PHASE with custom command.
[propagated-inputs]: Add PYTHON-FIXTURES, PYTHON-PBR, PYTHON-SIX,
PYTHON-TRACEBACK2 and PYTHON-UNITTEST2.
[native-inputs]: Add PYTHON-TESTSCENARIOS-BOOTSTRAP.
(python-testscenarios-bootstrap, python2-testscenarios-bootstrap): New public
variables.
(python-testscenarios): Adjust accordingly.
[propagated-inputs]: Replace PYTHON-TESTTOOLS with PYTHON-TESTTOOLS-BOOTSTRAP.
(python-subunit-bootstrap, python2-subunit-bootstrap): New public variables.
(python-subunit): Inherit.
(python-fixtures-bootstrap)[native-inputs]: Replace PYTHON-TESTTOOLS with
PYTHON-TESTTOOLS-BOOTSTRAP.
(python-testrepository-bootstrap)[native-inputs]: Replace PYTHON-SUBUNIT and
PYTHON-TESTTOOLS with PYTHON-SUBUNIT-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTSCENARIOS and PYTHON-TESTTOOLS with
PYTHON-TESTSCENARIOS-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
2018-02-28 13:58:43 +01:00
881ed3f868
gnu: python-extras: Update to 1.0.0.
...
* gnu/packages/python.scm (python-extras): Update to 1.0.0.
[source](uri): Use PYPI-URI.
2018-02-28 13:58:43 +01:00
bc69104a44
gnu: python-testresources: Update to 2.0.1.
...
* gnu/packages/check.scm (python-testresources-bootstrap,
python2-testresources-bootstrap): New public variables.
(python-testresources): Adjust accordingly.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTTOOLS.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTRESOURCES with PYTHON-TESTRESOURCES-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
151f32a74b
gnu: python-subunit: Update to 1.2.0.
...
* gnu/packages/check.scm (python-subunit): Update to 1.2.0.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove PYTHON-MIMEPARSE. Add PYTHON-TESTTOOLS.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTSCENARIOS.
2018-02-28 13:58:42 +01:00
335c9e3902
gnu: python-fixtures: Propagate python-pbr.
...
* gnu/packages/check.scm (python-fixtures-bootstrap,
python2-fixtures-bootstrap, python-testrepository-bootstrap,
python2-testrepository-bootstrap): New public variables.
(python-fixtures): Adjust accordingly.
(python-testrepository): Likewise.
[native-inputs]: Remove PYTHON-PBR-MINIMAL.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace PYTHON-FIXTURES
and PYTHON-TESTREPOSITORY WITH PYTHON-FIXTURES-BOOTSTRAP and
PYTHON-TESTREPOSITORY-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
bd041e7fd3
gnu: dionysus: Update to 1.4.0.
...
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
2018-02-28 14:42:36 +02:00
971d232b27
gnu: r-httpuv: Update to 1.3.6.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.
2018-02-28 04:13:19 +01:00
1143450c14
gnu: dblatex: Update to 0.3.10.
...
* gnu/packages/docbook.scm (dblatex): Update to 0.3.10.
[source]: Remove patch.
* gnu/packages/patches/dblatex-remove-multirow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 04:13:19 +01:00
bf5e7189dc
gnu: perl-yaml-libyaml: Update to 0.69.
...
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.69.
2018-02-28 04:13:18 +01:00
3199acb2cf
gnu: perl-yaml: Update to 1.24.
...
* gnu/packages/perl.scm (perl-yaml): Update to 1.24.
[source]: Update origin URI.
2018-02-28 04:13:18 +01:00
047cd2be07
gnu: perl-variable-magic: Update to 0.62.
...
* gnu/packages/perl.scm (perl-variable-magic): Update to 0.62.
2018-02-28 04:13:17 +01:00
91b73dba9d
gnu: perl-throwable: Update to 0.200013.
...
* gnu/packages/perl.scm (perl-throwable): Update to 0.200013.
2018-02-28 04:13:17 +01:00
1d4e6e1756
gnu: perl-text-diff: Update to 1.45.
...
* gnu/packages/perl.scm (perl-text-diff): Update to 1.45.
2018-02-28 04:13:16 +01:00
b0821f6b8d
gnu: perl-path-class: Update to 0.37.
...
* gnu/packages/perl.scm (perl-path-class): Update to 0.37.
2018-02-28 04:13:16 +01:00
Ricardo Wurmus