79f09fa239
gnu: hmmer: Build reproducibly.
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* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10 20:31:30 +10:00
5ded35d89d
gnu: Add sambamba.
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* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New
variables.
2017-03-10 10:13:59 +01:00
fc1428d295
gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].
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* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-10 01:44:39 -05:00
5c95465e27
gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.
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* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet'
and '--with-lmdb'.
[inputs]: Add 'lmdb' and 'kyotocabinet'.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:44 -05:00
469609a987
gnu: neomutt: Update to 20170306.
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* gnu/packages/mail.scm (neomutt): Update to 20170306.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 20:36:39 -05:00
91c8724165
Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."
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'kyotocabinet' is more current than tokyocabinet in development
and supported in neomutt aswell.
This reverts commit ef91e2b964
2017-03-09 20:36:32 -05:00
d4f6f78ea3
gnu: hiawatha: Adjust description.
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* gnu/packages/web.scm (hiawatha)[description]: Adjust it.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:42:16 -05:00
f2a7ce5033
gnu: Add font-tamzen.
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* gnu/packages/fonts.scm (font-tamzen): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09 19:23:07 -05:00
ff797172b0
gnu: btrfs-progs/static: Correct description.
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* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct
name of the btrfs-progs package and @command{} mark-up.
2017-03-09 23:55:57 +01:00
5595d4c1fd
gnu: btrfs-progs: Update to 4.10.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09 23:55:54 +01:00
ab84c13ff0
gnu: ibus-anthy: Update to 1.5.9.
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* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09 22:49:38 +01:00
2704f5be09
gnu: ibus: Update to 1.5.15.
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* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09 22:49:38 +01:00
1b34a47da0
gnu: pius: Update to 2.2.4.
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* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09 22:49:37 +01:00
50b398298f
gnu: youtube-dl: Update to 2017.03.07.
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* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09 22:49:37 +01:00
d9e94c6170
gnu: graphicsmagick: Build with 16 bit quantum depth.
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Octave requires graphicsmagick to be built with 16 bit quantum depth.
* gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add
"--with-quantum-depth=16" and "--enable-quantum-library-names"
to #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:12 -05:00
9f91340166
gnu: octave: Build with curl and graphicsmagick.
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* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09 16:46:09 -05:00
1f28b3195a
gnu: xf86-input-libinput: Update to 0.25.0.
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* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09 18:13:22 +01:00
b6b2ca5d19
gnu: Add python2-larch.
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* gnu/packages/python.scm (python2-larch): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:11:03 +01:00
c220f0b474
gnu: Add python2-tracing.
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* gnu/packages/python.scm (python2-tracing): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 17:09:17 +01:00
77e9941160
gnu: Add python2-ttystatus.
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* gnu/packages/python.scm (python2-ttystatus): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:53:23 +01:00
33e9490ca1
gnu: Add python2-cliapp.
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* gnu/packages/python.scm (python2-cliapp): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09 16:52:53 +01:00
6741676911
gnu: python-numpy-documentation: Use full git commit hash in submodule.
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* gnu/packages/python.scm (python-numpy-documentation,
python2-numpy-documentation)[native-inputs]: Update hash of
SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09 16:39:09 +01:00
63d62305c3
gnu: Remove obsolete numpy comment.
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* gnu/packages/python.scm: Remove comment.
2017-03-09 16:39:08 +01:00
ed6a21b45f
gnu: inetutils: Disable parallel tests.
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* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09 16:39:08 +01:00
ce79279d34
gnu: python-pandas: Really fix build on 32bit.
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* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
2017-03-09 16:39:08 +01:00
0da4f3659a
gnu: Add rsnapshot.
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* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09 12:29:23 +01:00
7b1866d783
gnu: python-fake-factory: Add back missing patch file.
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This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae
2017-03-09 06:08:18 -05:00
483188b76e
gnu: inetutils: Set the $localstatedir.
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This is a followup to commit 6f5d28f9d0
2017-03-09 05:00:29 -05:00
1fa8a51ecc
gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.
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Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402,
CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and
CVE-2017-5410.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr45 repository.
2017-03-09 03:58:29 -05:00
c9b631aef4
gnu: icecat: Update to 45.7.0-gnu1.
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* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches
included in 45.7.0.
2017-03-09 03:58:27 -05:00
f2ac937924
gnu: r: Remove obsolete configure flags.
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* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09 07:38:24 +01:00
f7db12022c
gnu: r: Update to 3.3.3.
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* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-09 07:38:24 +01:00
c49840f8d4
gnu: Add lensfun.
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* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08 23:49:24 +01:00
64f34aefe7
gnu: Add guile2.2-haunt.
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* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08 23:42:53 +01:00
517fce6327
gnu: Add guile2.2-reader.
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* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08 23:42:53 +01:00
77aa0887e1
gnu: guile-reader: Update to 0.6.2.
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* gnu/packages/guile.scm (guile-reader): Update to 0.6.2.
[arguments]: Remove.
2017-03-08 23:42:53 +01:00
beb1e8067d
gnu: Remove unneeded imports.
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* gnu/packages/backup.scm: Remove unneeded (guix build utils) import.
* gnu/packages/finance.scm: Likewise.
2017-03-08 23:42:52 +01:00
6f5d28f9d0
gnu: inetutils: Enable tests.
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* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f'
and #:configure-flags.
[native-inputs]: Add net-tools.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-08 13:11:59 -05:00
b03ee02f0d
gnu: python-pandas: Fix build on 32-bit.
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* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08 18:04:23 +01:00
ce7911ddae
gnu: Add python-faker.
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* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08 18:00:43 +01:00
1eaaea41e5
gnu: python-matplotlib-documentation: Fix build.
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* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]:
Add python-mock and graphviz.
[arguments]: Use separate build and install phases; correctly set latex paper size.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-08 17:39:00 +01:00
9c974c9366
gnu: iperf: Update to 3.1.7.
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* gnu/packages/networking.scm (iperf): Update to 3.1.7.
2017-03-08 17:37:51 +01:00
3a38cf2dfd
gnu: libinput: Update to 1.6.3.
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* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
2017-03-08 17:18:11 +01:00
beaa026aa7
gnu: r: Fix more reproducibility problems.
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* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
2017-03-08 12:32:49 +01:00
745c687be3
gnu: r: Fix syntax for INSTALL_OPTS.
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This is a follow-up to commit 4621acfd82
2017-03-08 12:32:49 +01:00
6c5b56f9fa
gnu: bash: Use the bootstrap Guile in 'url-fetch/reset-patch-level'.
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Fixes <http://bugs.gnu.org/25775 >.
Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others.
* guix/download.scm (in-band-download): Always use GUILE. This reverts
9f05908fb1
2017-03-07 23:58:08 +01:00
faa65e2735
gnu: kdevelop: Upgrade to 5.0.4.
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* gnu/packages/kde.scm (kdevelop, kdevplatform): Upgrade to 5.0.4.
(kdevplatform)[source]: Use kde mirror instead of github.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-07 23:21:59 +01:00
9bb766e70d
gnu: pcre2: Update to 10.23.
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* gnu/packages/pcre.scm (pcre2): Update to 10.23.
[source]: Remove patch.
[arguments]: Add phase to substitute /bin/echo reference.
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-07 23:21:22 +01:00
3391e2a078
gnu: khal: Update to 0.9.3.
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* gnu/packages/calendar.scm (khal): Update to 0.9.3.
[native-inputs]: Use python-pytest-2.9.2.
2017-03-07 16:37:21 -05:00
f11275c9e5
gnu: gnupg: Update to 2.1.19.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
[source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-07 16:37:17 -05:00
Ben J. Woodcroft