guix-devel/gnu/packages
Ricardo Wurmus 126c9e3ff7
gnu: bismark: Update to 0.19.1.
* gnu/packages/bioinformatics.scm (bismark): Update to 0.19.1.
[source]: Fetch from git; remove non-free software in snippet.
[arguments]: Update install phase.
2018-05-09 18:37:33 +02:00
..
aux-files gnu: linux-libre: Update to 4.16.1. 2018-04-11 15:04:54 -04:00
bootstrap
patches gnu: Add java-groovy-bootstrap. 2018-05-09 13:36:06 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: Add inxi. 2018-05-08 20:49:20 +03:00
adns.scm
agda.scm
aidc.scm gnu: qrencode: Update to 4.0.0. 2018-05-04 21:46:16 -04:00
algebra.scm gnu: giac-xcas: Update to 1.4.9-59. 2018-05-06 00:50:06 +02:00
android.scm gnu: android-udev-rules: Update to 20180112. 2018-04-24 17:47:40 +08:00
animation.scm
anthy.scm
apl.scm
apr.scm
aspell.scm
assembly.scm
astronomy.scm
attr.scm
audio.scm gnu: infamous-plugins: Patch all occurrences of compiler optimizations. 2018-05-01 19:01:42 +03:00
augeas.scm
autogen.scm
autotools.scm
avahi.scm gnu: nss-mdns: Update to 0.14.1. 2018-05-01 16:01:39 +02:00
avr.scm
axoloti.scm
backup.scm
base.scm
bash.scm
bdw-gc.scm
benchmark.scm gnu: fio: Use INVOKE. 2018-04-26 21:08:58 +02:00
bioconductor.scm gnu: r-multtest: Update to 2.36.0. 2018-05-04 02:22:01 +02:00
bioinformatics.scm gnu: bismark: Update to 0.19.1. 2018-05-09 18:37:33 +02:00
bison.scm
bittorrent.scm gnu: transmission: Update to 2.94. 2018-05-02 13:03:14 +02:00
boost.scm gnu: Use HTTPS for www.boost.org. 2018-05-01 06:51:15 +02:00
bootloaders.scm gnu: Add u-boot-mx6cuboxi. 2018-04-29 19:03:05 +02:00
bootstrap.scm
build-tools.scm Merge branch 'master' into staging 2018-04-25 15:53:41 +02:00
busybox.scm
c.scm gnu: tcc-wrapper: Use Guile 2.2. 2018-04-30 23:41:21 +02:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm gnu: Use ffmpeg@3.4 in packages not ready for 4.0. 2018-04-23 20:03:25 +02:00
certs.scm gnu: nss, nss-certs: Update to 3.36.1. 2018-04-15 14:45:43 +02:00
check.scm gnu: znc: Update to 1.7.0. 2018-05-02 23:45:55 +02:00
chemistry.scm
chez.scm
ci.scm gnu: cuirass: Update to 238f856. 2018-04-10 17:44:27 +02:00
cinnamon.scm
cmake.scm
cobol.scm
code.scm
commencement.scm guix: Separate the package name and version with "@", not "-". 2018-05-08 21:55:46 -07:00
compression.scm gnu: sharutils: Fix CVE-2018-1000097. 2018-04-16 18:02:14 +02:00
compton.scm
conkeror.scm
conky.scm
connman.scm
cook.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: r-ddalpha: Update to 1.3.3. 2018-05-04 08:03:49 +02:00
cross-base.scm
crypto.scm gnu: rhash: Update to 1.3.6. 2018-04-30 21:36:10 +02:00
cryptsetup.scm
cups.scm gnu: escpr: Update to 1.6.20. 2018-04-28 23:28:02 +02:00
curl.scm gnu: guile-curl: Use invoke. 2018-04-19 14:26:35 +02:00
cyrus-sasl.scm
databases.scm gnu: perl-dbix-class-schema-loader: Update to 0.07049. 2018-04-30 21:36:11 +02:00
datamash.scm gnu: datamash: Fix tests on ARM systems. 2018-04-12 22:55:51 -05:00
datastructures.scm
dav.scm
dc.scm
debian.scm
debug.scm gnu: qemu: Build with Python 3 and SDL2 support. 2018-04-26 12:45:57 +02:00
dejagnu.scm
dico.scm
dictionaries.scm gnu: grammalecte: Update to 0.6.4. 2018-04-23 22:32:03 +02:00
digest.scm
direct-connect.scm
disk.scm gnu: ranger: Fix description and tests. 2018-04-26 21:08:23 -05:00
display-managers.scm
django.scm
djvu.scm
dns.scm gnu: knot: Update to 2.6.6. 2018-04-17 05:42:51 +02:00
docbook.scm
docker.scm
documentation.scm
dunst.scm
dvtm.scm
ebook.scm
ed.scm
education.scm gnu: gcompris-qt: Update to 0.90. 2018-04-22 15:57:22 +03:00
electronics.scm gnu: Use HTTPS for more sigrok.org home pages. 2018-04-17 03:56:44 +02:00
elf.scm gnu: elfutils: Disable failing test. 2018-04-11 21:52:25 +03:00
elixir.scm
emacs.scm gnu: emacs-helm-shell-history: Fix byte compilation. 2018-05-08 23:56:02 +03:00
embedded.scm
emulators.scm gnu: retroarch: Update to 1.7.3. 2018-05-05 11:05:55 +02:00
enchant.scm
engineering.scm gnu: Update radare2 to 2.5.0. 2018-05-03 21:25:25 +02:00
enlightenment.scm gnu: enlightenment: Patch more '/usr/bin' locations. 2018-05-01 19:06:39 +03:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm
firmware.scm
flashing-tools.scm gnu: Add uefitool. 2018-04-15 09:22:16 +02:00
flex.scm
fltk.scm
fonts.scm gnu: DejaVu fonts: Update the home-page. 2018-05-07 17:45:27 -04:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm Merge branch 'staging' 2018-04-30 19:26:03 +02:00
freeipmi.scm gnu: freeipmi: Update to 1.6.2. 2018-05-05 13:16:32 +02:00
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: love: Remove unnecessary (guix build utils) module. 2018-05-08 20:13:28 +03:00
games.scm gnu: wesnoth: Update to 1.14.0. 2018-05-08 09:40:37 +05:30
gawk.scm
gcal.scm
gcc.scm gnu: gcc > 5: Use 'CPATH' instead of 'C_INCLUDE_PATH' & co. 2018-05-07 12:02:23 +02:00
gd.scm
gdb.scm
geo.scm gnu: r-mapproj: Update to 1.2.6. 2018-04-21 23:07:52 +02:00
gettext.scm
ghostscript.scm
gimp.scm gnu: gimp: Update to 2.10.0. 2018-04-30 21:07:58 -04:00
gkrellm.scm
gl.scm gnu: gl.scm: Don't import 'zip' from srfi-1. 2018-05-01 19:31:23 +03:00
glib.scm
gnome.scm gnu: libsoup: Update to 2.62.2. 2018-05-07 20:12:56 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: ffmpeg: Update to 4.0. 2018-04-23 15:44:39 +02:00
gnupg.scm gnu: gnupg: Update to 2.2.7. 2018-05-06 15:47:20 +02:00
gnustep.scm
gnuzilla.scm gnu: icecat: Use ffmpeg@3.4. 2018-05-03 20:23:54 +02:00
gobby.scm
golang.scm gnu: go@1.10: Update to 1.10.1 [fixes CVE-2018-7187]. 2018-04-24 13:07:08 -04:00
gperf.scm
gprolog.scm
gps.scm
graph.scm gnu: r-igraph: Update to 1.2.1. 2018-04-21 23:07:52 +02:00
graphics.scm gnu: blender: Update to 2.79b. 2018-04-18 17:41:35 -04:00
graphviz.scm
groff.scm gnu: groff-minimal: Preserve 'preconv' executable. 2018-05-06 15:47:20 +02:00
groovy.scm gnu: Add groovy. 2018-05-09 13:37:19 +02:00
gsasl.scm
gstreamer.scm Merge branch 'master' into staging 2018-04-25 15:53:41 +02:00
gtk.scm Merge branch 'master' into staging 2018-04-16 18:15:28 +02:00
guile-wm.scm
guile.scm gnu: guile-dbi: Switch to Guile 2.2. 2018-04-30 23:41:22 +02:00
gv.scm
gxmessage.scm
ham-radio.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell.scm
hexedit.scm
hugs.scm
hurd.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: feh: Update to 2.26. 2018-04-23 18:44:16 +02:00
image.scm gnu: libwebp: Update to 1.0.0. 2018-04-23 18:44:16 +02:00
imagemagick.scm
indent.scm
inklingreader.scm
inkscape.scm
irc.scm gnu: quassel: Use HTTPS home page. 2018-04-27 02:56:45 +02:00
iso-codes.scm
java.scm gnu: Add java-apache-ivy. 2018-04-29 23:23:14 +02:00
javascript.scm
jemalloc.scm
jrnl.scm
julia.scm gnu: Use HTTPS for julialang.org home pages. 2018-04-29 03:29:48 +02:00
kde-frameworks.scm
kde.scm gnu: krita: Update to 4.0.1. 2018-04-11 20:03:56 -04:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
ldc.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libstaroffice: Update to 0.0.6. 2018-04-27 15:56:19 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linux.scm gnu: strace: Fix build failure on Linux-Libre 4.16. 2018-05-06 21:05:11 +02:00
lirc.scm
lisp.scm
llvm.scm
logging.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: pcmanfm: Update to 1.3.0. 2018-04-27 02:56:43 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-autograd 2018-04-28 23:33:50 +02:00
mail.scm gnu: isync / mbsync: Fix typos in description. 2018-05-07 17:45:27 -04:00
make-bootstrap.scm
man.scm Revert "gnu: man-db: Embed absolute reference to 'preconv'." 2018-05-06 23:55:50 +02:00
markup.scm
marst.scm
mate.scm
maths.scm gnu: Add python-kiwisolver. 2018-05-05 13:16:32 +02:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm gnu: mes: Update to 0.13. 2018-04-28 15:30:49 +02:00
messaging.scm gnu: Add bitlbee-discord. 2018-05-07 11:47:04 +02:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: mpg123: Update to 1.25.10. 2018-04-18 17:14:13 -04:00
mpd.scm gnu: mpd-mpc: Update to 0.30. 2018-05-06 17:22:49 -04:00
mpi.scm gnu: hwloc: Skip 'linux-libnuma' test. 2018-04-10 17:44:27 +02:00
mtools.scm
multiprecision.scm gnu: Add iRRAM. 2018-04-13 17:20:39 +02:00
music.scm gnu: thefuck: Use INVOKE. 2018-04-27 05:36:55 +02:00
musl.scm
nano.scm gnu: nano: Update to 2.9.6. 2018-05-01 16:01:39 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: wireshark: Update to 2.6.0. 2018-05-06 16:15:35 +02:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm gnu: node: Update to 9.11.1. 2018-04-24 16:28:44 +02:00
noweb.scm
ntp.scm gnu: tlsdate: Fix compilation on aarch64-linux-gnu. 2018-04-11 01:03:46 +02:00
nutrition.scm
nvi.scm
ocaml.scm gnu: coq-coquelicot: Fix for coq 8.8. 2018-05-04 21:30:58 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-register: Reduce the set of dependencies. 2018-05-01 00:05:40 +02:00
parallel.scm gnu: parallel: Update to 20180422. 2018-04-25 11:26:52 +02:00
password-utils.scm gnu: python-bcrypt: Move to (gnu packages python-crypto). 2018-04-19 18:03:04 +02:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: Add poppler-data. 2018-04-30 21:07:57 -04:00
pem.scm
perl-check.scm gnu: perl-test-notabs: Update to 2.02. 2018-04-27 02:56:41 +02:00
perl-web.scm
perl.scm gnu: perl-moox-file-configdir: Update to 0.007. 2018-05-02 14:13:08 +02:00
photo.scm gnu: libraw: Update to 0.18.10 [fixes CVE-2018-10528, CVE-2018-10529]. 2018-05-03 20:36:04 +02:00
php.scm
pkg-config.scm
plotutils.scm gnu: asymptote: Update to 2.44. 2018-05-06 00:36:30 +02:00
polkit.scm
popt.scm
pretty-print.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm gnu: pure: Update to 0.68. 2018-04-17 04:02:07 +02:00
pv.scm
python-crypto.scm gnu: python-josepy: Update to 1.1.0. 2018-04-26 15:41:40 -04:00
python-web.scm gnu: python2-ndg-httpsclient: Fix build. 2018-04-27 02:56:17 +02:00
python.scm gnu: python-numpy: Update to 1.14.3. 2018-05-05 13:16:33 +02:00
qt.scm gnu: qscintilla: Update to 2.10.3. 2018-05-04 03:53:52 +02:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm gnu: lrdf: Update to 0.6.1. 2018-04-12 19:40:34 +02:00
re2c.scm
readline.scm
regex.scm
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-minitest-hooks: Update to 1.4.2. 2018-05-04 01:19:23 +02:00
rush.scm
rust.scm gnu: rust: Skip test_loading_cosine test. 2018-04-18 09:49:57 +03:00
samba.scm gnu: ldb: Update to 1.3.3. 2018-05-03 20:31:12 +02:00
sawfish.scm
scanner.scm
scheme.scm gnu: hop: Update hash of source tarball, which was modified in place. 2018-04-24 09:53:23 +02:00
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: guile-sdl2: Require guile 2.2. 2018-04-25 23:11:54 +02:00
search.scm
security-token.scm gnu: Add yubico-piv-tool. 2018-05-01 22:48:33 -07:00
selinux.scm
serialization.scm gnu: yaml-cpp: Update to 0.6.2. 2018-05-04 02:22:00 +02:00
serveez.scm
shells.scm gnu: xonsh: Update to 0.6.2. 2018-05-01 19:29:41 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm gnu: skribilo: Update to 0.9.4 and switch to Guile 2.2. 2018-04-30 14:22:43 +02:00
slang.scm
smalltalk.scm
sml.scm
speech.scm
spice.scm gnu: virt-viewer: Update to 6.0. 2018-04-24 12:14:37 +02:00
ssh.scm gnu: liboop: Update to 1.0.1. 2018-05-01 19:29:40 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-desc: Update to 1.2.0. 2018-05-04 08:06:11 +02:00
storage.scm gnu: ceph: Update to 12.2.5. 2018-04-25 15:09:22 +02:00
suckless.scm
swig.scm
sync.scm
syncthing.scm gnu: syncthing: Update to 0.14.47. 2018-05-01 10:52:55 -04:00
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm telephony: add twinkle 2018-05-08 21:59:37 -05:00
terminals.scm gnu: cool-retro-term: Update to 1.0.1. 2018-04-12 21:01:34 -05:00
terraform.scm
tex.scm gnu: texlive-bin: Patch texlua shebangs. 2018-04-21 00:19:33 +05:30
texinfo.scm gnu: Remove unneeded import. 2018-04-18 00:33:30 +02:00
text-editors.scm gnu: mg: Update to 20180408. 2018-04-26 21:08:58 +02:00
textutils.scm gnu: utf8proc: Update to 2.1.1. 2018-04-29 03:30:14 +02:00
time.scm
tls.scm gnu: mbedtls-apache: Update to 2.7.3. 2018-05-05 13:16:32 +02:00
tmux.scm gnu: tmux: Update to 2.7. 2018-04-14 23:08:42 -04:00
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.1. 2018-05-07 20:16:27 +02:00
uucp.scm
valgrind.scm
version-control.scm gnu: reposurgeon: End all phases in truth. 2018-04-30 21:36:10 +02:00
video.scm gnu: libva: Build with wayland support. 2018-05-01 19:06:39 +03:00
vim.scm
virtualization.scm gnu: libvirt: Update to 4.3.0. 2018-05-02 17:48:33 +02:00
vpn.scm gnu: openvpn: Update to 2.4.6. 2018-04-26 21:08:57 +02:00
vulkan.scm gnu: vulkan-icd-loader: Update to 1.1.73.0. 2018-04-25 11:18:34 +02:00
w3m.scm
wdiff.scm
web-browsers.scm gnu: lynx: Update to 2.8.9dev.17. 2018-04-18 12:33:42 -04:00
web.scm gnu: perl-html-scrubber: Update to 0.17. 2018-05-02 14:14:19 +02:00
webkit.scm gnu: webkitgtk: Update to 2.20.2 [fixes CVE-2018-4200]. 2018-05-07 20:12:56 +02:00
wget.scm gnu: wget: Update to 1.19.5 [fixes CVE-2018-0494]. 2018-05-06 23:57:49 +02:00
wicd.scm
wine.scm gnu: wine: Add Kerberos support. 2018-04-30 10:28:45 +02:00
wm.scm gnu: Add nitrogen. 2018-05-04 15:09:21 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm Merge branch 'master' into staging 2018-04-25 15:53:41 +02:00
xfce.scm
xfig.scm gnu: xfig: Update to 3.2.7. 2018-04-16 18:45:07 +02:00
xiph.scm
xml.scm gnu: pugixml: Update to 1.9. 2018-04-16 18:33:47 +02:00
xnee.scm
xorg.scm gnu: xf86-video-intel: Update to commit d7dfab62a9853b44bbcd67dac08391d8e5114c97. 2018-05-01 15:52:34 +02:00
zile.scm