guix-devel/gnu/packages
Ricardo Wurmus 886986b744
gnu: Add python-ont-fast5-api.
* gnu/packages/bioinformatics.scm (python-ont-fast5-api): New variable.
2019-07-15 12:18:01 +02:00
..
aux-files gnu: linux-libre: Update to 5.2. 2019-07-14 15:02:45 -04:00
bootstrap gnu: Add bootstrap-binaries for 'aarch64-linux'. 2017-02-20 12:58:07 +02:00
patches gnu: expat: fix CVE-2018-20843 2019-07-12 00:39:01 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: Add s-tui. 2019-07-13 23:18:54 +01:00
adns.scm
agda.scm
aidc.scm gnu: Add zbar. 2019-05-31 23:21:02 +02:00
algebra.scm gnu: cmh: Fix build. 2019-07-08 15:48:07 +02:00
android.scm gnu: android-googletest: Downgrade to 1.8.0. 2019-06-25 17:20:19 +02:00
animation.scm gnu: pencil2d: Update to 0.6.4. 2019-06-06 05:59:01 +02:00
anthy.scm
antivirus.scm
apl.scm gnu: apl: Add pcre support. 2019-06-24 18:59:21 +03:00
apr.scm
arcan.scm
aspell.scm gnu: aspell.scm: Handle dictionary names with underscore/uppercase. 2019-06-07 09:57:19 +02:00
assembly.scm
astronomy.scm gnu: wcslib: Update to 6.2. 2019-07-13 00:20:21 +02:00
attr.scm
audio.scm gnu: snd: Update to 19.5. 2019-07-03 17:30:21 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: borg: Update to 1.1.10. 2019-06-04 22:19:33 +02:00
base.scm gnu: tzdata: Update to 2019b. 2019-07-02 17:11:39 +02:00
bash.scm gnu: bash-completion: Fix cross-compilation. 2019-06-25 21:34:36 +02:00
batik.scm
bdw-gc.scm
benchmark.scm gnu: Add benchmark. 2019-06-14 23:18:12 +02:00
bioconductor.scm gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.7. 2019-07-08 15:33:35 +02:00
bioinformatics.scm gnu: Add python-ont-fast5-api. 2019-07-15 12:18:01 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm gnu: grub: Build ‘grub-mount’. 2019-07-09 01:43:31 +02:00
bootstrap.scm gnu: guile-bootstrap: Use the new 'derivation' calling convention. 2019-07-15 10:01:05 +02:00
build-tools.scm gnu: osc: Update to 0.165.1. 2019-06-07 18:36:02 +02:00
busybox.scm gnu: busybox: Don't install to usr. 2019-06-17 16:27:16 +03:00
c.scm
calcurse.scm gnu: calcurse: Update to 4.5.0. 2019-06-25 16:24:11 +02:00
calendar.scm
ccache.scm
cdrom.scm
certs.scm gnu: nss, nss-certs: Update to 3.44.1. 2019-06-29 23:30:18 +02:00
check.scm Merge branch 'master' into staging 2019-07-02 20:14:23 +02:00
chemistry.scm
chez.scm
chromium.scm gnu: ungoogled-chromium: Increase build timeout. 2019-07-10 00:54:29 +02:00
ci.scm gnu: Remove hydra. 2019-06-18 20:12:42 +03:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm gnu: Add quazip. 2019-06-28 09:34:25 +02:00
compton.scm
conky.scm
connman.scm gnu: cmst: Don't install files to usr. 2019-06-17 10:02:47 +03:00
cook.scm
coq.scm gnu: coq: Update to 8.9.1. 2019-06-07 18:36:02 +02:00
cpio.scm
cpp.scm gnu: dashel: Don't use unstable tarball. 2019-06-07 18:36:02 +02:00
cppi.scm
cran.scm gnu: r-future-apply: Update to 1.3.0. 2019-06-29 01:34:44 +02:00
crates-io.scm gnu: crate: Add proc-macro2 and quote. 2019-06-11 18:05:44 -07:00
cross-base.scm gnu: cross-base: Allow non-default linux-headers. 2019-05-29 15:44:54 +02:00
crypto.scm gnu: tomb: Update to 2.6. 2019-07-02 20:57:33 +02:00
cryptsetup.scm
cups.scm gnu: cups-filters: Update to 1.25.0. 2019-06-14 11:47:02 +02:00
curl.scm
cyrus-sasl.scm
databases.scm Merge branch 'staging' 2019-07-11 20:33:44 +02:00
datamash.scm
datastructures.scm gnu: liburcu: Update to 0.11.1. 2019-06-06 05:59:00 +02:00
dav.scm
dbm.scm
dc.scm
debian.scm gnu: debootstrap: Workaround for PATH issues. 2019-06-05 09:54:49 -07:00
debug.scm
dejagnu.scm
dico.scm gnu: dico: Update to 2.9. 2019-06-15 18:24:52 +02:00
dictionaries.scm gnu: grammalecte: Update to 1.2. 2019-07-06 00:10:44 +02:00
digest.scm
direct-connect.scm
disk.scm gnu: dosfstools: Enable compat symlinks. 2019-07-08 13:05:56 +02:00
display-managers.scm gnu: sddm: Add QtQuick-related dependencies to sddm. 2019-05-29 23:16:49 +02:00
django.scm gnu: Django: Update to 1.11.21 [fixes CVE-2019-12308, CVE-2019-11358]. 2019-06-03 22:28:49 +02:00
djvu.scm
dlang.scm
dns.scm gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471]. 2019-06-20 00:28:14 +02:00
docbook.scm
docker.scm gnu: docker-compose: Update to 1.24.1. 2019-07-13 15:13:53 +02:00
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: snap: Update to 5.0.1. 2019-07-09 09:13:43 +02:00
efi.scm
electronics.scm
elf.scm
elixir.scm
emacs-xyz.scm gnu: Add emacs-elpher. 2019-07-14 20:14:35 +05:30
emacs.scm
embedded.scm
emulators.scm gnu: mame: Update to 0.211. 2019-06-27 13:28:33 +02:00
enchant.scm gnu: enchant: Update to 2.2.4. 2019-06-23 15:05:00 +02:00
engineering.scm gnu: radare2: Update to 3.5.1. 2019-06-18 06:15:01 +02:00
enlightenment.scm gnu: Add evisum. 2019-07-14 11:02:23 +03:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm
file.scm
finance.scm gnu: Add grisbi. 2019-07-12 12:05:00 -04:00
firmware.scm
flashing-tools.scm gnu: rkflashtool: Update to 5.2-1.8966c4e. 2019-07-15 12:10:32 +03:00
flex.scm
fltk.scm
fonts.scm gnu: Add font-anonymous-pro-minus. 2019-06-16 19:44:42 +02:00
fontutils.scm
forth.scm
fpga.scm gnu: gtkwave: Update to 3.3.101. 2019-06-08 07:30:26 +02:00
freedesktop.scm gnu: libinput: Update to 1.13.4. 2019-06-29 23:30:19 +02:00
freeipmi.scm
fribidi.scm
ftp.scm gnu: filezilla: Update to 3.42.1. 2019-06-19 15:42:50 +02:00
fvwm.scm
game-development.scm gnu: plib: Fix CVE-2011-4620, CVE-2012-4552. 2019-07-10 12:45:34 +03:00
games.scm gnu: supertux: Fix homepage. 2019-06-26 19:45:34 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm gnu: Add gramps 2019-06-26 15:59:58 +02:00
genimage.scm
geo.scm gnu: Add osm-gps-map 2019-06-26 15:59:58 +02:00
gettext.scm gnu: po4a: Update to 0.56. 2019-06-08 23:49:46 +02:00
ghostscript.scm
gimp.scm gnu: gimp: Update to 2.10.12. 2019-06-13 12:52:55 +02:00
gkrellm.scm
gl.scm gnu: mesa: Do not pass an empty string argument to the build system. 2019-06-29 23:30:18 +02:00
glib.scm Merge branch 'master' into staging 2019-06-20 23:08:16 +02:00
gnome.scm gnu: mutter: Remove duplicate gtk+ input. 2019-07-10 17:39:28 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gnucash-docs: Update to 3.5. 2019-05-31 23:06:10 -04:00
gnunet.scm gnu: libmicrohttpd: Update to 0.9.65. 2019-07-09 04:48:02 +02:00
gnupg.scm gnu: python-gnupg: Update to 0.4.4 [fixes CVE-2019-6690]. 2019-07-10 12:45:24 +03:00
gnustep.scm
gnuzilla.scm gnu: icecat: Update to 60.8.0-guix1 [security fixes]. 2019-07-09 19:31:36 -04:00
gobby.scm
golang.scm gnu: go-github-com-mattn-go-isatty: Update to 0.0.7. 2019-06-04 13:28:55 -04:00
gperf.scm
gpodder.scm gnu: gpodder: Only return #t when needed. 2019-06-13 09:35:08 +03:00
gprolog.scm
gps.scm gnu: gama: Update to 2.06. 2019-07-08 10:38:23 +03:00
graph.scm gnu: Add rw. 2019-06-17 19:47:15 +02:00
graphics.scm gnu: Blender: Update to 2.80-rc1. 2019-07-12 15:58:44 -04:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm gnu: gstreamer: Fix buffer offset problem. 2019-06-29 23:17:13 +02:00
gtk.scm Merge branch 'master' into staging 2019-07-02 20:14:23 +02:00
guile-wm.scm
guile-xyz.scm gnu: guile-wisp: fix url 2019-07-12 23:54:19 +02:00
guile.scm gnu: guile: Add 2.2.6. 2019-07-01 12:29:34 +02:00
gv.scm
gxmessage.scm
ham-radio.scm gnu: Add aptdec. 2019-07-12 22:44:55 +05:30
hardware.scm
haskell-apps.scm
haskell-check.scm gnu: Add ghc-hedgehog. 2019-07-02 18:33:52 +02:00
haskell-crypto.scm
haskell-web.scm gnu: ghc-http-types: Update to 0.12.3. 2019-06-07 00:09:33 +05:30
haskell.scm Merge branch 'master' into staging 2019-07-02 20:14:23 +02:00
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm
ibus.scm
icu4c.scm gnu: ungoogled-chromium: Build against ICU 64. 2019-06-30 14:11:00 +02:00
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm gnu: geeqie: Update to commit c220dde. 2019-07-03 12:03:07 +02:00
image.scm gnu: Add pngquant. 2019-07-13 20:04:44 +02:00
imagemagick.scm Merge branch 'master' into staging 2019-07-04 16:16:41 +02:00
inklingreader.scm
inkscape.scm
ipfs.scm
irc.scm gnu: irssi: Update to 1.1.3. [fixes CVE-2019-13045]. 2019-07-03 14:37:33 -04:00
iso-codes.scm
java-compression.scm
java-maths.scm
java.scm gnu: Add openjdk12. 2019-06-21 22:50:25 +02:00
javascript.scm gnu: mujs: Update to 1.0.6 [fixes CVE-2019-1141{1,2,3}, CVE-2019-12798]. 2019-07-10 12:45:35 +03:00
jemalloc.scm
jose.scm
jrnl.scm
julia.scm
kawa.scm gnu: Add Kawa. 2019-06-13 13:00:37 +02:00
kde-frameworks.scm
kde-plasma.scm
kde.scm gnu: krita: Update to 4.2.2. 2019-06-28 09:34:25 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm gnu: Remove libevent@2.0. 2019-06-03 22:28:48 +02:00
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linux.scm gnu: linux-libre: Fix build on aarch64. 2019-07-14 15:04:41 -04:00
lirc.scm
lisp.scm gnu: sbcl-clx: Update to 0.7.5. 2019-07-11 23:15:00 +02:00
llvm.scm gnu: libomp: Download over HTTPS. 2019-07-08 15:33:35 +02:00
logging.scm gnu: spdlog: Clarify license. 2019-06-20 05:38:58 +02:00
logo.scm gnu: Add qlogo. 2019-07-05 12:49:25 +05:30
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-keras. 2019-06-19 15:05:45 +02:00
magic-wormhole.scm
mail.scm gnu: mumi: Update to 0.0.0-4.ea0a28f. 2019-07-11 23:48:08 +02:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm gnu: toot: Don't install the Makefile. 2019-06-25 19:09:51 +03:00
mate.scm gnu: mate-themes: Update to 3.22.20. 2019-06-23 00:22:29 +02:00
maths.scm gnu: octave-cli: Sort inputs alphabetically. 2019-07-02 15:04:56 +03:00
maven.scm
mc.scm gnu: mc: Update to 4.8.23. 2019-06-25 17:22:11 +02:00
mcrypt.scm
medical.scm
mes.scm gnu: nyacc: Add 0.94.0. 2019-06-13 13:00:36 +02:00
messaging.scm gnu: znc: Enable internationalisation. 2019-06-25 16:24:11 +02:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: MPD: Update to 0.21.11. 2019-07-03 16:24:50 -04:00
mpi.scm gnu: python-mpi4py: Update to 3.0.2. 2019-06-21 09:04:37 +02:00
mtools.scm
multiprecision.scm
music.scm gnu: cmus: Support AAC format. 2019-07-12 23:54:19 +02:00
musl.scm
nano.scm gnu: nano: Update to 4.3. 2019-06-19 17:50:44 +02:00
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: nzbget: Update to 21.0. 2019-07-14 15:55:47 +02:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
nss.scm gnu: nss, nss-certs: Update to 3.44.1. 2019-06-29 23:30:18 +02:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: ocaml-batteries: Fix non determinism. 2019-06-06 21:23:38 +02:00
ocr.scm
onc-rpc.scm gnu: libnsl: Do not use unstable tarball. 2019-06-15 09:18:51 +02:00
openbox.scm
opencl.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: diffoscope: Update to 116. 2019-07-07 18:57:28 -07:00
parallel.scm gnu: Add python-slurm-magic. 2019-06-18 16:51:22 +02:00
password-utils.scm gnu: Add qtpass. 2019-07-04 12:31:44 +02:00
patchutils.scm gnu: patchwork: Update to 2.1.4. 2019-07-05 07:52:44 +01:00
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Update to 1.15.0 [fixes CVE-2018-18662, CVE-2018-19777, 2019-07-10 12:46:02 +03:00
pem.scm
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: perl-module-build: Update to 0.4229. 2019-07-02 14:21:36 +02:00
perl6.scm
phabricator.scm
photo.scm gnu: libexif: Fix CVE-2018-20030. 2019-07-10 21:33:48 +03:00
php.scm gnu: php: Update to 7.3.6. 2019-05-31 14:41:32 +02:00
pkg-config.scm
plotutils.scm
poedit.scm
polkit.scm gnu: polkit: Update to 0.116 [fixes CVE-2019-6133]. 2019-06-05 00:37:39 +02:00
popt.scm gnu: gengetopt: Update to 2.23. 2019-06-15 18:28:13 +02:00
pretty-print.scm gnu: a2ps: Fix CVE-2015-8107. 2019-07-10 12:47:47 +03:00
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm gnu: Add pulseaudio-dlna. 2019-07-04 18:05:03 +02:00
pumpio.scm
pure.scm
pv.scm
python-check.scm gnu: Add python-pytest-virtualenv. 2019-06-26 16:24:58 +02:00
python-compression.scm gnu: Add python-zipp. 2019-06-26 16:24:58 +02:00
python-crypto.scm gnu: python-bcrypt: Update to 3.1.7. 2019-06-22 01:37:35 +02:00
python-web.scm gnu: Add python-requests-2.20. 2019-07-13 15:13:53 +02:00
python-xyz.scm gnu: Add python-progressbar33. 2019-07-15 12:18:01 +02:00
python.scm gnu: python2: Add 'cpe-name' property. 2019-06-18 21:02:42 +03:00
qt.scm
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
regex.scm gnu: re2: Update to 2019-07-01. 2019-07-02 17:18:54 +02:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: Remove duplicate 'ruby-crass' package. 2019-07-04 12:31:44 +02:00
rush.scm gnu: rush: Update to 2.1. 2019-07-13 15:13:52 +02:00
rust.scm gnu: rust: Fix hash. 2019-07-12 14:55:11 +02:00
sagemath.scm gnu: Move ratpoints into "sagemath.scm" 2019-06-21 22:57:19 +02:00
samba.scm gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]. 2019-06-20 22:49:32 +02:00
sawfish.scm gnu: rep-gtk: Update to 0.90.8.3. 2019-06-27 12:22:04 +05:30
scanner.scm
scheme.scm gnu: racket: Update to 7.3. 2019-06-11 13:45:27 -04:00
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm gnu: guile-sdl2: Update to 0.4.0. 2019-06-05 15:47:01 +02:00
search.scm
security-token.scm
selinux.scm
serialization.scm gnu: jsoncpp: Update to 1.9.0. 2019-07-06 18:49:52 +02:00
serveez.scm
shells.scm gnu: oil-shell: Update to 0.6pre22. 2019-06-17 12:36:13 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm gnu: newt: Update to 0.52.21. 2019-06-08 02:30:25 +02:00
smalltalk.scm
sml.scm
speech.scm
sphinx.scm gnu: python-sphinx: Update to 2.1.2. 2019-06-20 23:19:09 +02:00
spice.scm
sqlite.scm
squirrel.scm
ssh.scm Revert "gnu: openssh: Don't create the PRIVSEP_PATH directory." 2019-06-27 00:21:16 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: python-rpy2: Update to 3.0.4-1.19868a8. 2019-07-13 23:50:01 +02:00
stb.scm
storage.scm gnu: ceph: Update to 13.2.6. 2019-06-08 23:49:46 +02:00
suckless.scm
swig.scm
sync.scm gnu: rclone: Update to 1.48.0. 2019-06-21 23:20:36 +02:00
syncthing.scm gnu: Syncthing: Update to 1.1.4. 2019-06-04 13:28:59 -04:00
syndication.scm gnu: rtv: Update to 1.27.0. 2019-06-18 06:15:02 +02:00
synergy.scm
task-management.scm
tbb.scm gnu: tbb: Update to 2019_U8. 2019-06-11 09:31:24 +02:00
tcl.scm gnu: Add go-github.com-nsf-gothic. 2019-06-22 17:11:27 +02:00
telephony.scm gnu: Add jami-client-gnome. 2019-03-26 19:17:01 +01:00
terminals.scm gnu: eternalterminal: Update to 5.1.10. 2019-06-18 06:15:02 +02:00
terraform.scm
tex.scm
texinfo.scm
text-editors.scm gnu: Add texmacs. 2019-06-26 18:23:02 +02:00
textutils.scm gnu: utf8proc: Update to 2.4.0. 2019-06-21 12:04:34 +02:00
time.scm Merge branch 'master' into staging 2019-07-10 00:55:42 +02:00
tls.scm gnu: certbot, python-acme: Update to 0.35.1. 2019-07-11 20:17:54 -04:00
tmux.scm gnu: tmux-xpanes: Update to 4.1.1. 2019-06-08 02:30:24 +02:00
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm gnu: miniupnpc: Update to 2.1.20190625. 2019-06-30 14:11:02 +02:00
usb-modeswitch.scm gnu: Add USB_ModeSwitch. 2019-06-13 00:44:01 +02:00
uucp.scm
valgrind.scm
version-control.scm gnu: cvs: Rename patch file. 2019-07-10 21:33:48 +03:00
video.scm gnu: youtube-dl-gui: Add .desktop file. 2019-07-02 23:13:21 +02:00
vim.scm gnu: vim-airline-themes: Update to 0.0.0-2.e6f2332. 2019-07-11 14:57:38 +03:00
virtualization.scm gnu: libvirt: Update to 5.5.0 [security fixes]. 2019-07-02 23:59:41 +02:00
vpn.scm gnu: wireguard: Update to 0.0.20190702. 2019-07-03 13:38:29 +02:00
vulkan.scm gnu: vulkan-headers: Update to 1.1.112. 2019-06-26 09:18:03 +02:00
w3m.scm gnu: Fix descriptions to not use quotes. 2019-03-31 20:51:10 +03:00
wdiff.scm
web-browsers.scm
web.scm gnu: perl-html-form: Update to 6.04. 2019-07-11 00:27:27 +02:00
webkit.scm gnu: WebKitGTK: Update to 2.24.3. 2019-07-02 17:27:13 +02:00
wget.scm gnu: wgetpaste: Update to 2.29. 2019-07-09 16:52:59 +03:00
wicd.scm
wine.scm gnu: wine-staging: Update to 4.12.1. 2019-07-07 13:51:06 +02:00
wireservice.scm gnu: wireservice: New wireservice-package macro. 2019-07-08 13:05:55 +02:00
wm.scm gnu: i3blocks: Update to ec050e7. 2019-07-08 13:05:56 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm Merge branch 'staging' 2019-07-11 20:33:44 +02:00
xfce.scm gnu: thunar-volman: Update to 0.9.3. 2019-07-03 00:26:08 +02:00
xfig.scm
xiph.scm gnu: speexdsp: Update to 1.2.0. 2019-06-14 11:49:31 +02:00
xml.scm gnu: expat: fix CVE-2018-20843 2019-07-12 00:39:01 +02:00
xnee.scm
xorg.scm gnu: xkeyboard-config: Update to 2.27. 2019-07-03 16:32:43 +02:00
zile.scm
zwave.scm gnu: open-zwave: Unbundle hidapi. 2019-06-17 12:36:13 +02:00