Commit Graph

23478 Commits

Author SHA1 Message Date
Leo Famulari 613ef763a5
Merge branch 'master' into staging 2018-03-06 13:39:12 -05:00
Leo Famulari 8a325748fb
gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}].
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
2018-03-06 13:34:20 -05:00
Leo Famulari 3b5262865c
gnu: syncthing: Update to 0.14.45.
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
2018-03-06 13:24:20 -05:00
Leo Famulari 01794ffce0
gnu: Remove go-github-com-templexxx-xor.
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
2018-03-06 13:24:20 -05:00
Leo Famulari 6482d30472
gnu: Remove go-github-com-templexxx-cpufeat.
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
2018-03-06 13:24:20 -05:00
Leo Famulari 7d02ae4b85
gnu: Remove go-github-com-tjfoc-gmsm-sm4.
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 7915ef0bff
gnu: Remove go-github-com-klauspost-reedsolomon.
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
2018-03-06 13:24:19 -05:00
Leo Famulari abb8973544
gnu: Remove go-github-com-klauspost-cpuid.
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari eaca421063
gnu: Remove go-github-com-ccding-go-stun.
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari bb0a84f89d
gnu: Remove go-github-com-xtaci-kcp-go.
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
2018-03-06 13:24:19 -05:00
Leo Famulari 78f19a4754
gnu: Remove go-github-com-xtaci-smux.
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
2018-03-06 13:24:15 -05:00
Marius Bakke 77412c45b1
gnu: re2: Update to 2018-03-01.
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
2018-03-06 18:23:42 +01:00
Marius Bakke 37204750b1
gnu: feh: Update to 2.25.
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
2018-03-06 18:22:26 +01:00
Marius Bakke 6836c228ae
gnu: iceauth: Update to 1.0.8.
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
2018-03-06 18:16:51 +01:00
Marius Bakke 6f1f8d1312
gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.

* gnu/packages/django.scm (python-django): Update to 1.11.11.
2018-03-06 17:38:12 +01:00
Ricardo Wurmus c072cf57b9
gnu: samtools: Update to 1.7.
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 727d847980
gnu: htslib: Update to 1.7.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus e325c89076
gnu: r-rhdf5: Make build reproducible.
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus fe58ab013b
gnu: r-lambda-r: Run unit tests.
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
2018-03-06 16:03:04 +01:00
Ricardo Wurmus 08ddb98aef
gnu: r-gtools: Make output deterministic.
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
2018-03-06 16:03:04 +01:00
Oleg Pykhalov 5ad13e6cdf
gnu: emacs-transmission: Update to 0.12.1.
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06 12:09:02 +03:00
Oleg Pykhalov 69611d3eac
gnu: haskell-mode: Fix find emacs-stream elisp directory.
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
2018-03-06 10:34:59 +03:00
Rutger Helling cee03b267c
gnu: ovmf: Fix build and add FIXME.
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
2018-03-06 08:27:07 +01:00
Gábor Boskovits 0f2778029a
gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05 20:42:48 +01:00
Tobias Geerinckx-Rice c8213ffc52
gnu: perl-email-address: Update to 1.909.
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 1c3de94cff
gnu: perl-sub-quote: Update to 2.005000.
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 503a00597b
gnu: perl-xml-compile-cache: Update to 1.06.
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice b5de208e84
gnu: perl-xml-rss: Update to 1.60.
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05 17:32:11 +01:00
Tobias Geerinckx-Rice 437e5fae13
gnu: editres: Update to 1.0.7.
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice cc7a4bbd27
gnu: tocc, libtocc: Use HTTPS home page.
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 55b7cd10c2
gnu: perl-io-socket-ip: Update to 0.39.
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05 17:32:10 +01:00
Tobias Geerinckx-Rice 530df311ac
gnu: perl-www-mechanize: Update to 1.87.
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 9599339c59
gnu: openvpn: Mark up description.
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 0d34993a65
gnu: openvpn: Update to 2.4.5.
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
2018-03-05 17:32:09 +01:00
Tobias Geerinckx-Rice 211748d475
gnu: papi: Use HTTPS home page.
* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
2018-03-05 17:32:08 +01:00
Tobias Geerinckx-Rice f7c870f78a
gnu: papi: Fix documentation location.
* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
2018-03-05 17:32:08 +01:00
Rutger Helling 0ebc1b934d
gnu: xpra: Update to 2.2.5.
* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
2018-03-05 12:29:37 +01:00
Mark H Weaver 6a4eaafee0
gnu: linux-libre@4.14: Update to 4.14.24.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24.
(%linux-libre-4.14-hash): Update hash.
2018-03-05 03:43:45 -05:00
Mark H Weaver ee483a5626
gnu: linux-libre@4.9: Update to 4.9.86.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
2018-03-05 03:43:02 -05:00
Mark H Weaver 88b1a38e26
gnu: linux-libre@4.4: Update to 4.4.120.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
2018-03-05 03:42:07 -05:00
Christopher Baines 68d70f6ae3
gnu: Add emacs-terraform-mode.
* gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
2018-03-05 07:48:49 +00:00
Christopher Baines dc97f7e20e
gnu: Add emacs-hcl-mode.
* gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
2018-03-05 07:48:48 +00:00
Efraim Flashner 16718b6776
services: Add openntpd service.
* gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to
set openntpd daemon's user and localstatedir. Add a custom phase to not
try to create said directory at install time.
* gnu/services/networking.scm (<openntpd-configuration>): New record type.
(openntpd-shepherd-service, openntpd-service-activation): New procedures.
(openntpd-service-type): New variable.
* doc/guix.texi (Networking Services): Add openntpd documentation.
2018-03-05 08:46:28 +02:00
Tobias Geerinckx-Rice ac1a9ce8b0
gnu: papi: Update phase style.
* gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for
SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.
2018-03-04 18:03:46 +01:00
Tobias Geerinckx-Rice 635dd0cc96
gnu: tomb: Update phase style.
* gnu/packages/crypto.scm (tomb)[arguments]: Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 9539016e3a
gnu: tomb: Use HTTPS home page.
* gnu/packages/crypto.scm (tomb)[home-page]: Use HTTPS.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice ed36949a9d
gnu: footswitch: Update to 0.1-2.deedd87.
* gnu/packages/accessibility.scm (footswitch): Update to 0.1-2.deedd87.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice bd128d5e88
gnu: footswitch: Remove redundant MKDIR-P.
* gnu/packages/accessibility.scm (footswitch)[arguments]: Remove MKDIR-P
before INSTALL-FILE.
2018-03-04 18:03:45 +01:00
Tobias Geerinckx-Rice 92793c7b02
gnu: gitolite: Update phase style.
* gnu/packages/version-control.scm (gitolite): Substitute INVOKE for
SYSTEM* and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 7730b7179c
gnu: gitolite: Update to 3.6.7.
* gnu/packages/version-control.scm (gitolite): Update to 3.6.7.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice d035eaa304
gnu: ii, sic: Use HTTPS home pages.
* gnu/packages/irc.scm (ii, sic)[home-page]: Use HTTPS.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice e0dbead5a7
gnu: ii: Update to 1.8.
* gnu/packages/irc.scm (ii): Update to 1.8.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 53244d1ffa
gnu: cloc: Update phase style.
* gnu/packages/code.scm (cloc)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-03-04 18:03:44 +01:00
Tobias Geerinckx-Rice 95943ed7dc
gnu: cloc: Update to 1.76.
* gnu/packages/code.scm (cloc): Update to 1.76.
[source]: Update origin URI scheme.
[inputs]: Add perl-parallel-forkmanager.
2018-03-04 18:03:43 +01:00
Tobias Geerinckx-Rice 03b7195794
gnu: liblo: Mark up description.
* gnu/packages/audio.scm (liblo)[description]: Use @dfn.
2018-03-04 18:03:43 +01:00
Marius Bakke 3e57b7d99b
gnu: multipath-tools: Update to 0.7.4.
* gnu/packages/linux.scm (multipath-tools): Update to 0.7.4.
[source]: Download using HTTPS.
2018-03-04 17:54:40 +01:00
Marius Bakke 5275f69e6e
gnu: freexl: Update to 1.0.5 [security fixes].
Fixes CVE-2018-7435, CVE-2018-7436, CVE-2018-7437, CVE-2018-7438 and
CVE-2018-7439.

* gnu/packages/xml.scm (freexl): Update to 1.0.5.
2018-03-04 17:54:40 +01:00
Marius Bakke 5b0b520e22
gnu: ceph: Update to 12.2.4.
* gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Adjust to
upstream changes.
* gnu/packages/patches/ceph-disable-unittest-throttle.patch: Delete file.
* gnu/packages/patches/ceph-rocksdb-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/storage.scm (ceph): Update to 12.2.4.
[source](patches): Adjust.
[arguments]: Add "-DWITH_BABELTRACE=OFF" in #:configure-flags.  Build with
CMAKE-3.11.  Adjust file substitutions.  Wrap 'ceph' executable.
[native-inputs]: Add GPERF.
[inputs]: Replace BOOST with BOOST-1.66.  Add PYTHON2-PRETTYTABLE.
2018-03-04 17:54:40 +01:00
Marius Bakke 1568cc14fa
gnu: Add cmake@3.11.
* gnu/packages/cmake.scm (cmake-3.11): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke bbce53c4b3
gnu: Add boost@1.66.0.
* gnu/packages/boost.scm (boost-1.66): New public variable.
2018-03-04 17:54:40 +01:00
Marius Bakke 8293d21c66
gnu: java-snappy: Update to 1.1.7.
* gnu/packages/compression.scm (java-snappy): Update to 1.1.7.
[arguments]: Use INVOKE instead of SYSTEM*.  Avoid CMAKE dependency.  Delete
Hadoop test.  Enable fixed test.
[native-inputs]: Add JAVA-COMMONS-LANG and JAVA-COMMONS-IO.
2018-03-04 17:54:40 +01:00
Marius Bakke 5a43735722
gnu: snappy: Update to 1.1.7.
* gnu/packages/compression.scm (snappy): Update to 1.1.7.
[source]: Change to git archive.  Set file-name.
[build-system]: Change to CMAKE-BUILD-SYSTEM.
[arguments]: Add #:configure-flags.
[description]: Fix infractions.
2018-03-04 17:54:39 +01:00
Marius Bakke 7fa9cca84a
gnu: rocksdb: Update to 5.10.4.
* gnu/packages/databases.scm (rocksdb): Update to 5.10.4.
[source]: Substitute the unbundled copy of GNU Parallel.
[arguments]: Add "V=1" "USE_RTTI=1" and
"ROCKSDBTESTS_END=db_tailing_iter_test" to #:make-flags.  Set #:test-target to
"check_some".  Respect parallel jobs in 'build-release-libraries' phase and
rename to 'build'.
[license]: Update for changes in 5.5.4.
2018-03-04 17:54:39 +01:00
Danny Milosavljevic 81ed306dee
gnu: inkscape: Disable duplicate icon cache generation.
* gnu/packages/inkscape.scm (inkscape): Disable duplicate icon cache
generation.
2018-03-04 15:44:34 +01:00
Danny Milosavljevic 692f6e457e
gnu: abiword: Disable duplicate icon cache generation.
* gnu/packages/abiword.scm (abiword): Disable duplicate icon cache generation.
2018-03-04 15:43:46 +01:00
Danny Milosavljevic 64cdd73c22
gnu: python-funcy: Fix tests.
* gnu/packages/python.scm (python-funcy)[native-inputs]: Delete python-pytest-warnings.
2018-03-04 15:42:41 +01:00
Roel Janssen 1382bde93c
gnu: bash: Don't specify default configuration filenames.
* gnu/packages/bash.scm (bash): Remove SYS_BASHRC and SYS_BASH_LOGOUT.
2018-03-04 15:21:30 +01:00
Gábor Boskovits 48c8622010
gnu: antlr3-3.3: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.3)[source]: Add patch.
* gnu/packages/patches/antlr3-3_3-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:16:37 +01:00
Gábor Boskovits 4c763b4d67
gnu: antlr3-3.1: Fix java8 issue.
* gnu/packages/java.scm (antlr3-3.1)[source]: Add patch.
* gnu/packages/patches/antlr3-3_1-fix-java8-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2018-03-04 14:13:47 +01:00
Efraim Flashner 82f09c0e8e
gnu: go-github-com-aki237-nscjar: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-aki237-nscjar)[source]: Declare
a source file-name.
2018-03-04 12:38:51 +02:00
Efraim Flashner 6de107b0c9
gnu: go-github-com-davidjpeacock-cli: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-davidjpeacock-cli)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner fdbece74aa
gnu: go-github-com-alsm-ioprogress: Declare a source file-name.
* gnu/packages/golang.scm (go-github-com-alsm-ioprogress)[source]:
Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 661ad6f0c2
gnu: freegish: Declare a source file-name.
* gnu/packages/games.scm (freegish)[source]: Declare a source file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner a1dc853ef4
gnu: disorderfs: Declare a source file-name.
* gnu/packages/file-systems.scm (disorderfs)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner aeb95f1f97
gnu: emacs-sly: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-sly)[source]: Declare a source
file-name.
2018-03-04 12:38:50 +02:00
Efraim Flashner 5a6f7a6805
gnu: emacs-epl: Declare a source file-name.
* gnu/packages/emacs.scm (emacs-epl)[source]: Declare a source
file-name.
2018-03-04 12:38:47 +02:00
Efraim Flashner c553b08b49
gnu: python-apsw: Use invoke.
* gnu/packages/databases.scm (python-apsw)[arguments]: Use invoke.
2018-03-04 12:05:14 +02:00
Efraim Flashner f5c847ebd0
gnu: python-apsw: Declare a source file-name.
* gnu/packages/databases.scm (python-apsw)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner c2c04cde9b
gnu: kurly: Declare a source file-name.
* gnu/packages/curl.scm (kurly)[source]: Declare a source file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner 277be74fa7
gnu: unshield: Declare a source file-name.
* gnu/packages/compression.scm (unshield)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner eafe96ea9e
gnu: sfarkxtc: Declare a source file-name.
* gnu/packages/compression.scm (sfarkxtc)[source]: Declare a source
file-name.
2018-03-04 12:05:14 +02:00
Efraim Flashner da49d13710
gnu: piranha: Declare a source file-name.
* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner d9a069c2d9
gnu: libdivsufsort: Declare a source file-name.
* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a
source file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner 5110672474
gnu: seek: Declare a source file-name.
* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source
file-name.
2018-03-04 12:05:13 +02:00
Efraim Flashner b1d4026dfb
gnu: r-dropbead: Declare a source file-name.
* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source
file-name.
2018-03-04 12:05:10 +02:00
Efraim Flashner a1eb506cf3
gnu: faust@2: Declare a source file-name.
* gnu/packages/audio.scm (faust@2)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner fdf359f82b
gnu: rubberband: Declare a source file-name.
* gnu/packages/audio.scm (rubberband)[source]: Declare a source
file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 70aa07d296
gnu: qjackrcd: Declare a source file-name.
* gnu/packages/audio.scm (qjackrcd)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 6677c99a8b
gnu: lv2-devel: Declare a source file-name.
* gnu/packages/audio.scm (lv2-devel)[source]: Declare a source file-name.
2018-03-04 11:01:40 +02:00
Efraim Flashner 35a01e67c8
gnu: lv2-mda-piano: Declare a source file-name.
* gnu/packages/audio.scm (lv2-mda-piano)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner a18ee793d7
gnu: papagayo: Declare a source file-name.
* gnu/packages/animation.scm (papagayo)[source]: Declare a source
file-name.
2018-03-04 11:01:39 +02:00
Efraim Flashner 7fc944273d
gnu: masscan: Declare a source file-name.
* gnu/packages/admin.scm (masscan)[source]: Declare a source file-name.
2018-03-04 11:01:36 +02:00
Tobias Geerinckx-Rice c94752ad22
gnu: tor: Update to 0.3.2.10 [security fixes].
This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490),
TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well.

* gnu/packages/tor.scm (tor): Update to 0.3.2.10.
2018-03-03 21:31:08 +01:00
Ricardo Wurmus 1adeef3194
gnu: Add dropseq-tools.
* gnu/packages/bioinformatics.scm (dropseq-tools): New variable.
2018-03-03 21:28:05 +01:00
Ricardo Wurmus 72299db9fe
gnu: Add java-picard-2.10.3.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable.
2018-03-03 21:28:02 +01:00
Ricardo Wurmus 719fa958f3
gnu: Add java-htsjdk-2.10.1.
* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable.
2018-03-03 21:27:59 +01:00
Ricardo Wurmus 9a599c17b7
gnu: Add java-htsjdk-latest.
* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable.
2018-03-03 21:27:57 +01:00
Ricardo Wurmus 9ac7db1830
gnu: Add java-biojava-alignment-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable.
2018-03-03 21:27:56 +01:00
Ricardo Wurmus 5528f9e8f0
gnu: Add java-biojava-phylo-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable.
2018-03-03 21:27:53 +01:00
Ricardo Wurmus e44da58c16
gnu: Add java-biojava-core-4.0.
* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable.
2018-03-03 21:27:51 +01:00
Ricardo Wurmus 22c09c335b
gnu: Add java-biojava-alignment.
* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable.
2018-03-03 21:27:48 +01:00
Ricardo Wurmus b28c803708
gnu: Add java-biojava-phylo.
* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable.
2018-03-03 21:27:46 +01:00
Ricardo Wurmus 10645b9212
gnu: Add java-forester-1.005.
* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable.
2018-03-03 21:27:44 +01:00
Ricardo Wurmus f09d16e594
gnu: Add java-forester.
* gnu/packages/bioinformatics.scm (java-forester): New variable.
2018-03-03 21:27:41 +01:00
Ricardo Wurmus 93abc975fe
gnu: Add java-openchart2.
* gnu/packages/java.scm (java-openchart2): New variable.
2018-03-03 21:27:39 +01:00
Ricardo Wurmus 5fef15e506
gnu: Add java-biojava-core.
* gnu/packages/bioinformatics.scm (java-biojava-core): New variable.
2018-03-03 21:27:36 +01:00
Ricardo Wurmus dbb3581383
gnu: Add java-jdistlib.
* gnu/packages/statistics.scm (java-jdistlib): New variable.
2018-03-03 21:27:33 +01:00
Ricardo Wurmus 4e92911c82
gnu: Add java-jtransforms.
* gnu/packages/algebra.scm (java-jtransforms): New variable.
2018-03-03 21:27:30 +01:00
Ricardo Wurmus 24074b0bdd
gnu: Add java-jlargearrays.
* gnu/packages/algebra.scm (java-jlargearrays): New variable.
2018-03-03 21:27:27 +01:00
Ricardo Wurmus c8d996080e
gnu: Add java-la4j.
* gnu/packages/algebra.scm (java-la4j): New variable.
2018-03-03 21:27:21 +01:00
Ricardo Wurmus bd975831c6
gnu: Add fastqc.
* gnu/packages/bioinformatics.scm (fastqc): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 2f0d041816
gnu: Add java-cisd-jhdf5.
* gnu/packages/java.scm (java-cisd-jhdf5): New variable.
2018-03-03 21:21:48 +01:00
Ricardo Wurmus 04ddca26e6
gnu: Add java-cisd-args4j.
* gnu/packages/java.scm (java-cisd-args4j): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus 30d554732a
gnu: Add java-cisd-base.
* gnu/packages/java.scm (java-cisd-base): New variable.
2018-03-03 21:21:47 +01:00
Ricardo Wurmus f9e0fcb28f
gnu: Add texlive-fonts-iwona.
* gnu/packages/tex.scm (texlive-fonts-iwona): New variable.
2018-03-03 21:21:47 +01:00
Nicolas Goaziou fb547c3429
gnu: dictionaries: Add copyright line.
* gnu/packages/dictionaries.scm: Add copyright line.
2018-03-03 14:23:17 +01:00
Nicolas Goaziou 5e332c57d1
gnu: wireshark: Update to 2.4.5.
* gnu/packages/networking.scm (wireshark): Update to 2.4.5.
2018-03-03 14:21:20 +01:00
Nicolas Goaziou 0645da3fe3
gnu: grammalecte: Update to 0.6.2.
* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2.
[arguments]: Remove.
2018-03-03 14:06:43 +01:00
Christopher Baines 62b138caf5
gnu: Add ruby-iruby.
* gnu/packages/ruby.scm (ruby-iruby): New variable.
2018-03-03 12:51:27 +00:00
Christopher Baines 8279b1d3b1
gnu: Add ruby-mimemagic.
* gnu/packages/ruby.scm (ruby-mimemagic): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines b03eb6acb4
gnu: Add ruby-data_uri.
* gnu/packages/ruby.scm (ruby-data_uri): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines d0afff263c
gnu: Add ruby-cztop.
* gnu/packages/ruby.scm (ruby-cztop): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines fe5dd5f446
gnu: Add ruby-czmq-ffi-gen.
* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines afdb437c82
gnu: Add ruby-bond.
* gnu/packages/ruby.scm (ruby-bond): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines a8d2bf3cab
gnu: Add ruby-bacon-bits.
* gnu/packages/ruby.scm (ruby-bacon-bits): New variable.
2018-03-03 12:51:26 +00:00
Christopher Baines cf646acf96
gnu: Add ruby-mocha-on-bacon.
* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable.
2018-03-03 12:51:25 +00:00
Christopher Baines 433dc74611
gnu: networking: Add czmq.
* gnu/packages/networking.scm (czmq): New variable.
2018-03-03 12:51:23 +00:00
Tobias Geerinckx-Rice add928d35f
gnu: ghc-refact: Fix typo in description.
* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo.
2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice 75377c6c48
gnu: quagga: Update to 1.2.4.
* gnu/packages/networking.scm (quagga): Update to 1.2.4.
2018-03-03 13:28:22 +01:00
Tobias Geerinckx-Rice e6d30cf755
gnu: conky: Remove redundant MKDIR-P.
* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P.
2018-03-03 13:27:17 +01:00
Tobias Geerinckx-Rice 9d13f82da8
gnu: sslh: Update to 1.19c.
* gnu/packages/networking.scm (sslh): Update to 1.19c.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice dbefd3ff72
gnu: wv: Edit description.
Wv is still unmaintained – this just makes it more obvious.

* gnu/packages/wv.scm (wv)[description]: Mention the product versions in
addition to internal file format ones.  Align more closely with the
upstream description.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 83a9003c5d
gnu: libseccomp: Update to 2.3.3.
* gnu/packages/linux.scm (libseccomp): Update to 2.3.3.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice 74a2f8ff1f
gnu: hdparm: Update to 9.54.
* gnu/packages/linux.scm (hdparm): Update to 9.54.
2018-03-03 13:27:16 +01:00
Tobias Geerinckx-Rice f4009ade25
gnu: sdl2: Update to 2.0.8.
* gnu/packages/sdl.scm (sdl2): Update to 2.0.8.
2018-03-03 13:27:15 +01:00
Ricardo Wurmus ec8b3d48ff
gnu: r-httpuv: Update to 1.3.6.2.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus fac40f38fe
gnu: r-dbi: Update to 0.8.
* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus 081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2.
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
2018-03-03 10:46:35 +01:00
Ricardo Wurmus 3ede1550e8
gnu: cutadapt: Update to 1.16.
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
Ricardo Wurmus 62a4b952c0
gnu: python-xopen: Update to 0.3.2.
* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02 23:43:55 +01:00
Ricardo Wurmus fa5965990d
gnu: Add r-hpar.
* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02 23:24:57 +01:00
Ricardo Wurmus 2a112be09a
gnu: Add r-powerplus.
* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02 23:07:26 +01:00
Ricardo Wurmus d976454c6b
gnu: Add r-np.
* gnu/packages/cran.scm (r-np): New variable.
2018-03-02 23:07:20 +01:00
Ricardo Wurmus 7b81a7eabf
gnu: Add r-phontools.
* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02 23:07:12 +01:00
Ricardo Wurmus 68b6a67e94
gnu: Add r-complexplus.
* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02 23:07:04 +01:00
Ricardo Wurmus f96eda90d5
gnu: Add r-expm.
* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02 23:06:57 +01:00
Ricardo Wurmus 7531ee842c
gnu: Add r-trend.
* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02 23:06:50 +01:00
Ricardo Wurmus d32e572489
gnu: Add r-cubature.
* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02 23:06:41 +01:00
Ricardo Wurmus 6615a36421
gnu: Add r-urca.
* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02 23:06:33 +01:00
Ricardo Wurmus 5b25bc55dc
gnu: Add r-fractal.
* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02 23:06:26 +01:00
Ricardo Wurmus 19da7fe314
gnu: Add r-extradistr.
* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02 23:06:17 +01:00
Ricardo Wurmus 4993a02ad7
gnu: Add r-tsa.
* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02 23:06:10 +01:00
Ricardo Wurmus a2c079a780
gnu: Add r-wmtsa.
* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02 23:06:00 +01:00
Ricardo Wurmus b6dc325538
gnu: Add r-tseries.
* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02 23:05:52 +01:00
Ricardo Wurmus dceb159206
gnu: Add r-quantmod.
* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02 23:05:43 +01:00
Ricardo Wurmus 0be7effefa
gnu: Add r-sapa.
* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02 23:05:35 +01:00
Ricardo Wurmus 034ac9d67a
gnu: Add r-ifultools.
* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02 23:05:14 +01:00
Ricardo Wurmus d3cb62e58d
gnu: Add r-splus2r.
* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02 23:05:02 +01:00
Ricardo Wurmus 0b64332c74
gnu: Add r-leaps.
* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02 23:03:10 +01:00
Ricardo Wurmus 93c21ddc86
gnu: Add r-ttr.
* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02 22:55:10 +01:00
Ricardo Wurmus 4e35c4290e
gnu: Add r-rbiofabric.
* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 1088744d87
gnu: Add r-sna.
* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 07a2f34d5c
gnu: Add r-statnet-common.
* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02 22:23:18 +01:00
Ricardo Wurmus 5f4565b18f
gnu: Add r-network.
* gnu/packages/cran.scm (r-network): New variable.
2018-03-02 22:23:18 +01:00
Tobias Geerinckx-Rice b01a1b34f2
gnu: nghttp2: Update to 1.31.0.
* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 6fda93e6c8
gnu: libpsl: Update to 0.20.1.
* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 5658b4ce69
gnu: zerofree: Update to 1.1.1.
* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice a40f732bb6
gnu: python-webencodings: Fix typo in description.
* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02 15:52:57 +01:00
Tobias Geerinckx-Rice 139ecdee8e
gnu: delta: Remove redundant code.
* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice defe0282c2
gnu: perl-mozilla-ca: Update to 20180117.
* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice dc8584d2b1
gnu: perl-test-harness: Update to 3.41.
* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 6e48fbb19a
gnu: highlight: Don't hard-code Lua version.
* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
2018-03-02 15:52:56 +01:00
Tobias Geerinckx-Rice 3a5c02777d
gnu: highlight: Update to 3.42.
* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 467834d550
gnu: ghc-abstract-deque: Fix typos in description.
* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice d338321ddb
gnu: qscintilla: Use HTTPS home page.
* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 2c1cc27f8f
gnu: fortify-headers: Update to 0.9.
* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02 15:52:55 +01:00
Tobias Geerinckx-Rice 5c0f68e844
gnu: fossil: Update phase style.
* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f136c8f23d
gnu: gnome-mpv: Update to 0.14.
* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice f563d19904
gnu: ovmf: Update phase style.
* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 0dae492195
gnu: ovmf: Use HTTPS home page.
* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
2018-03-02 15:52:54 +01:00
Tobias Geerinckx-Rice 3ebf12ea0e
gnu: b43-tools: Use HTTPS home page.
* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 315c89f5ba
gnu: b43-tools: Update phase style.
* gnu/packages/firmware.scm (b43-tools)[arguments]: Substitute INVOKE
for SYSTEM* and FOR-EACH for EVERY, and end phases with #t.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice bb5c358204
gnu: b43-tools: Update to 0.0.0-1.27892ef.
* gnu/packages/firmware.scm (b43-tools): Update to 0.0.0-1.27892ef.
[version]: Use our standard versioning scheme.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 12adfdf0b6
gnu: Update (gnu packages python-web) phase styles.
* gnu/packages/python-web.scm (python-openid, python-terminado)
(python-geventhttpclient, python-cachecontrol, python-webencodings)
(python-s3transfer)[arguments]: Substitute INVOKE for SYSTEM* and end
phases with #t.
2018-03-02 15:52:53 +01:00
Tobias Geerinckx-Rice 6a192184ec
gnu: python-flask-script: Update to 2.0.6.
* gnu/packages/python-web.scm (python-flask-script): Update to 2.0.6.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 05075433a2
gnu: python-htmlmin: Update to 0.1.12.
* gnu/packages/python-web.scm (python-htmlmin): Update to 0.1.12.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice bda82eff18
gnu: python-s3transfer: Update to 0.1.13.
* gnu/packages/python-web.scm (python-s3transfer): Update to 0.1.13.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice e46dd02d99
gnu: python-webtest: Update to 2.0.29.
* gnu/packages/python-web.scm (python-webtest): Update to 2.0.29.
2018-03-02 15:52:52 +01:00
Tobias Geerinckx-Rice 6f21aca728
gnu: python-ndg-httpsclient: Update to 0.4.4.
* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.4.4.
2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 3c5658c596
gnu: python-cssutils: Update to 1.0.2.
* gnu/packages/python-web.scm (python-cssutils): Update to 1.0.2.
2018-03-02 15:52:51 +01:00
Tobias Geerinckx-Rice 1a6fb8dac1
gnu: python-flask-babel: Update to 0.11.2.
* gnu/packages/python-web.scm (python-flask-babel): Update to 0.11.2.
2018-03-02 15:52:51 +01:00
Mark H Weaver 99654a1685
gnu: icecat: Add more fixes from upstream mozilla-esr52.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr52 repository.
2018-03-02 01:31:30 -05:00
Mark H Weaver 8863f2f051
gnu: icecat: Update to 52.6.0-gnu1.
* gnu/packages/gnuzilla.scm (icecat): Update to 52.6.0-gnu1.
[source]: Remove patches that are no longer needed.
* gnu/packages/patches/icecat-bug-1348660-pt5.patch,
gnu/packages/patches/icecat-bug-1414945.patch,
gnu/packages/patches/icecat-bug-1415133.patch,
gnu/packages/patches/icecat-bug-1424373-pt2.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-03-02 01:31:19 -05:00
Leo Famulari 703a8b7dc5
gnu: postgresql@9.6: Update to 9.6.8 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.8.
2018-03-01 20:01:48 -05:00
Leo Famulari bb17b2be49
gnu: postgresql: Update to 10.3 [fixes CVE-2018-1058].
* gnu/packages/databases.scm (postgresql): Update to 10.3.
2018-03-01 20:01:48 -05:00
Leo Famulari e9802319f7
gnu: memcached: Update to 1.5.6.
* gnu/packages/databases.scm (memcached): Update to 1.5.6.
2018-03-01 20:00:12 -05:00
Tobias Geerinckx-Rice 64bd7f35a1
gnu: fossil: Update to 2.5.
* gnu/packages/version-control.scm (fossil): Update to 2.5.
2018-03-02 00:23:40 +01:00
Mark H Weaver da525e714a
gnu: linux-libre: Update to 4.15.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.7.
(%linux-libre-hash): Update hash.
2018-03-01 17:59:21 -05:00
Mark H Weaver 433765e599
gnu: linux-libre@4.14: Update to 4.14.23.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.23.
(%linux-libre-4.14-hash): Update hash.
2018-03-01 17:58:35 -05:00
Mark H Weaver 8b1f76c443
gnu: linux-libre@4.9: Update to 4.9.85.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.85.
2018-03-01 17:58:04 -05:00
Mark H Weaver 5026696033
gnu: linux-libre@4.4: Update to 4.4.119.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.119.
2018-03-01 17:57:22 -05:00
Julien Lepiller 8147d7c675
gnu: php: Fix test failure.
* gnu/packages/php.scm (php)[inputs]: Use gd-for-php.
(gd-for-php): New private variable.
* gnu/packages/patches/gd-CVE-2018-5711.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-03-01 22:25:28 +01:00
Tobias Geerinckx-Rice 738aa0ca1d
gnu: sdcc: Fix typo in description.
* gnu/packages/sdcc.scm (sdcc)[description]: Fix (upstream) typo.  Add
hyphens.
2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice 1ff14bf2cd
gnu: sdcc: Update to 3.7.0.
* gnu/packages/sdcc.scm (sdcc): Update to 3.7.0.
2018-03-01 22:21:02 +01:00
Tobias Geerinckx-Rice bb47da4a6a
gnu: php: Update to 7.2.3.
* gnu/packages/php.scm (php): Update to 7.2.3.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice a9c0a133c0
gnu: python-stem: Update to 1.6.0.
* gnu/packages/python.scm (python-stem): Update to 1.6.0.
[arguments]: Add ‘fix-test-environment’ phase.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 68e7632db0
gnu: onionshare: Update phase style.
* gnu/packages/tor.scm (onionshare)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice fbb0164a5f
gnu: privoxy: Update phase style.
* gnu/packages/tor.scm (privoxy)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with #t.
2018-03-01 22:21:01 +01:00
Tobias Geerinckx-Rice 66b89ee28e
gnu: python-stem: Update phase style.
* gnu/packages/python.scm (python-stem)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with #t.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 57c734a628
gnu: liblo: Update to 0.29.
* gnu/packages/audio.scm (liblo): Update to 0.29.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4972f9cc0a
gnu: nagios: Update to 4.3.4.
* gnu/packages/monitoring.scm (nagios): Update to 4.3.4.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 4f5452ab3a
gnu: libftdi: Use HTTPS home page.
* gnu/packages/libftdi.scm (libftdi)[home-page]: Use HTTPS.
2018-03-01 22:21:00 +01:00
Tobias Geerinckx-Rice 7314a5475e
gnu: dbacl: Use HTTPS home page.
* gnu/packages/textutils.scm (dbacl)[home-page]: Use HTTPS.
2018-03-01 22:20:59 +01:00
Tobias Geerinckx-Rice db317b38dc
gnu: dbacl: Update phase style.
* gnu/packages/textutils.scm (dbacl)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-03-01 22:20:59 +01:00
Ricardo Wurmus b672a81607
gnu: Graft glibc to allow execution on Linux 2.6.32.
* gnu/packages/patches/glibc-allow-kernel-2.6.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (glibc/linux)[replacement]: New field.
(glibc-2.26-patched): New variable.
2018-03-01 21:32:36 +01:00
Ricardo Wurmus b79e1fbe96
gnu: r-httpuv: Update to 1.3.6.1.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.1.
2018-03-01 21:28:54 +01:00
Ricardo Wurmus bfae3f7121
gnu: r-lubridate: Update to 1.7.3.
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.3.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus eaf0905970
gnu: r-tidyselect: Update to 0.2.4.
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.4.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 35d12b05f0
gnu: r-rmarkdown: Update to 1.9.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus dafd13d5b2
gnu: r-rcpparmadillo: Update to 0.8.400.0.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.400.0.0.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 36e1202b2c
gnu: r-yaml: Update to 2.1.17.
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.17.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus e3ddb56329
gnu: r-gdtools: Update to 0.1.7.
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.7.
[inputs]: Add zlib.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus e24ccf46f1
gnu: r-rpart: Update to 4.1-13.
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-13.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 744e06e717
gnu: r-mass: Update to 7.3-49.
* gnu/packages/statistics.scm (r-mass): Update to 7.3-49.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 29c9c9c2c1
gnu: r-rmysql: Update to 0.10.14.
* gnu/packages/databases.scm (r-rmysql): Update to 0.10.14.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 5e38673455
gnu: r-pillar: Update to 1.2.1.
* gnu/packages/cran.scm (r-pillar): Update to 1.2.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9d6f392529
gnu: r-truncnorm: Update to 1.0-8.
* gnu/packages/cran.scm (r-truncnorm): Update to 1.0-8.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 9aaf2813e2
gnu: r-scran: Update to 1.6.8.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 6a0e13906b
gnu: r-wgcna: Update to 1.63.
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 61cbd49b30
gnu: r-topgo: Update to 2.30.1.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 535014ce60
gnu: r-genomicranges: Update to 1.30.3.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus eb8971b742
gnu: r-limma: Update to 3.34.9.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 22d96920d3
gnu: r-edger: Update to 3.20.9.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.9.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus 99e4b11d81
gnu: r-shortread: Update to 1.36.1.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.36.1.
2018-03-01 21:28:53 +01:00
Ricardo Wurmus b180893289
gnu: r-dexseq: Update to 1.24.3.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.3.
2018-03-01 21:28:52 +01:00
Efraim Flashner 360ea2bbd5
gnu: efl: Use separate "include" output.
* gnu/packages/enlightenment.scm (efl)[outputs]: Add 'include' output.
2018-03-01 22:19:37 +02:00
Efraim Flashner 40a7997e63
gnu: efl: Update to 1.20.7.
* gnu/packages/enlightenment.scm (efl): Update to 1.20.7.
2018-03-01 22:18:58 +02:00
Ricardo Wurmus 643817e445
gnu: Add patchmatrix.
* gnu/packages/music.scm (patchmatrix): New variable.
2018-03-01 21:12:59 +01:00
Ricardo Wurmus 1debc5b9d2
gnu: ghc-uuid: Fix build.
* gnu/packages/haskell.scm (ghc-uuid)[arguments]: Allow building with a newer
version of QuickCheck.
2018-03-01 21:11:43 +01:00
Tobias Geerinckx-Rice a9f5a7e14b
gnu: help2man: Update to 1.47.6.
* gnu/packages/man.scm (help2man): Update to 1.47.6.
2018-03-01 19:46:08 +01:00
Christopher Lemmer Webber 04e7b1e7f9
gnu: golly: Fix source url.
* gnu/packages/games.scm (golly): Fix source url.
2018-03-01 11:19:56 -06:00
Marius Bakke 86990eeda2
Merge branch 'master' into staging 2018-03-01 18:04:12 +01:00
Marius Bakke 52fb59ef25
gnu: imagemagick: Update to 6.9.9-36.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-36.
2018-03-01 17:40:49 +01:00
Marius Bakke fe29681717
gnu: libe-book: Update to 0.1.3.
* gnu/packages/libreoffice.scm (libe-book): Update to 0.1.3.
[propagated-inputs]: Add LIBLANGTAG.
2018-03-01 17:40:49 +01:00
Marius Bakke 814bc35d55
gnu: libabw: Update to 0.1.2.
* gnu/packages/libreoffice.scm (libabw): Update to 0.1.2.
2018-03-01 17:40:48 +01:00
Marius Bakke c7cc1fcbe0
gnu: libpagemaker: Update to 0.0.4.
* gnu/packages/libreoffice.scm (libpagemaker): Update to 0.0.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
Marius Bakke 9ed31fca81
gnu: libmspub: Update to 0.1.4.
* gnu/packages/libreoffice.scm (libmspub): Update to 0.1.4.
[source](uri): Use HTTPS.
2018-03-01 17:40:48 +01:00
Marius Bakke 789445a10a
gnu: xorgproto: Update to 2018.4.
* gnu/packages/xorg.scm (xorgproto): Update to 2018.4.
2018-03-01 17:40:48 +01:00
Ludovic Courtès 21b5fc253e
gnu: cuirass: Update to aa4c778.
* gnu/packages/ci.scm (cuirass): Update to aa4c778.
2018-03-01 17:38:55 +01:00
Rene 35e2d0cfae
gnu: nautilus: Use meson-build-system, update to 3.26.2.
* gnu/packages/gnome.scm (nautilus): Update to 3.26.2.
[build-system]: Use meson-build-system.
[native-inputs]: Add desktop-file-utils and gtk+:bin.
[inputs]: Add libselinux.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-01 14:00:21 +01:00
Leo Famulari acb59d99db
gnu: Fix Borg crashes with Python msgpack > 0.5
The Python msgpack library changed its name, but borg (and possibly
other packages) still uses the old name.

Fixes <https://bugs.gnu.org/30662>.

* gnu/packages/python.scm (python-msgpack-transitional): New variable.
* gnu/packages/backup.scm (borg)[inputs]: Use it.
2018-02-28 23:43:23 -05:00
Ricardo Wurmus 2adfe819f0
gnu: Remove duplicate definition of emacs-esxml.
* gnu/packages/emacs.scm (emacs-esxml): Remove.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus c1d2236569
gnu: Remove emacs-nov.
The package already exists with the name "emacs-nov-el".

* gnu/packages/emacs.scm (emacs-nov): Remove.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 201084ac1f
gnu: java-bouncycastle-bcpkix: Use invoke.
* gnu/packages/java.scm (java-bouncycastle-bcpkix)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 9be4b9fa58
gnu: java-bouncycastle-bcprov: Use invoke.
* gnu/packages/java.scm (java-bouncycastle-bcprov)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 1b6bc51675
gnu: java-lz4: Use invoke.
* gnu/packages/java.scm (java-lz4)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus ec32bc9860
gnu: antlr3-3.1: Remove version from package name.
* gnu/packages/java.scm (antlr3-3.1)[name]: Remove.
[arguments]: Adjust accordingly.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 13f38d31a4
gnu: antlr3-3.1: Use invoke.
* gnu/packages/java.scm (antlr3-3.1)[arguments]: Use invoke.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus e85c1bf6cd
gnu: java-jansi-native: Simplify.
* gnu/packages/java.scm (java-jansi-native)[arguments]: Use "invoke"; remove
useless "mkdir-p".
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 3d6925ef51
gnu: java-jansi-native: Fix description.
* gnu/packages/java.scm (java-jansi-native)[description]: Replace placeholder
text with an actual description.
2018-02-28 23:05:06 +01:00
Ricardo Wurmus 6338ea9a88
gnu: java-hawtjni: Simplify build phases.
* gnu/packages/java.scm (java-hawtjni)[arguments]: Use "invoke" instead of
"system*"; use "install-file" instead of "mkdir-p" and "copy-file".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 080d0b605a
gnu: java-commons-jexl-2: Use invoke.
* gnu/packages/java.scm (java-commons-jexl-2)[arguments]: Use invoke.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8c7d32e07c
gnu: java-jnacl: Do not prefix jar with "java-".
* gnu/packages/java.scm (java-jnacl)[arguments]: Rename jar to "jnacl.jar".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 3e87923a67
gnu: java-jnacl: Update to 0.1.0-2.094e819.
* gnu/packages/java.scm (java-jnacl): Update to 0.1.0-2.094e819.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 8333c206a9
gnu: java-jnacl: Simplify build phase.
* gnu/packages/java.scm (java-jnacl)[arguments]: Simplify "fix-tests" phase.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus e158642816
gnu: java-jnacl: Correct license.
* gnu/packages/java.scm (java-jnacl)[license]: Change to BSD-2.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus 602f54f436
gnu: java-jnacl: Use invoke.
* gnu/packages/java.scm (java-jnacl)[arguments]: Use "invoke".
2018-02-28 23:05:05 +01:00
Ricardo Wurmus f201b18ed7
gnu: Add java-ecj-3.5.
* gnu/packages/java.scm (java-ecj-3.5): New variable.
2018-02-28 23:05:05 +01:00
Ricardo Wurmus c1cb857645
gnu: Add java-ecj-3.
* gnu/packages/java.scm (java-ecj-3): New variable.
2018-02-28 23:05:05 +01:00
Tobias Geerinckx-Rice 9d43579f2d
gnu: dovecot: Update to 2.3.0.1 [fixes CVE-2017-14461].
* gnu/packages/mail.scm (dovecot): Update to 2.3.0.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 4321aeb6d3
gnu: html-xml-utils: Update to 7.6.
* gnu/packages/xml.scm (html-xml-utils): Update to 7.6.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 0828bd82bd
gnu: libftdi: Update to 1.4.
* gnu/packages/libftdi.scm (libftdi): Update to 1.4.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice 30bbb86ae3
gnu: git-remote-gcrypt: Update to 1.0.2.
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.2.
2018-02-28 22:58:23 +01:00
Tobias Geerinckx-Rice aa08ab38cd
gnu: dropbear: Update to 2018.76.
* gnu/packages/ssh.scm (dropbear): Update to 2018.76.
2018-02-28 22:58:23 +01:00
Konrad Hinsen 649eb8b567
gnu: Add sala.
* gnu/packages/password-utils.scm (sala): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-28 22:47:48 +01:00
Ludovic Courtès 4c853b7c11
gnu: guile-static-stripped: Add 'finit_module' wrapper.
* gnu/packages/patches/guile-linux-syscalls.patch: Add
'load-linux-module/fd' procedure.
2018-02-28 22:47:48 +01:00
Ludovic Courtès 63e48300d1
gnu: guile-static-stripped: Remove dependency on bash-minimal.
Previously guile-static-stripped, which is embedded in the initrd, would
depend on 'bash-minimal' and 'glibc'; the closure size was 77 MiB.  Now
the closure size is down to 45.7 MiB.

Reported by Danny Milosavljevic <dannym@scratchpost.org> in
<https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00505.html>.

* gnu/packages/make-bootstrap.scm (%guile-static): Remove the
'pre-configure' phase.
(%guile-static-stripped)[arguments]: Add #:allowed-references.
2018-02-28 22:47:48 +01:00
Efraim Flashner 652cad85fa
gnu: libunistring: Update to 0.9.9.
* gnu/packages/libunistring (libunistring): Update to 0.9.9.
2018-02-28 22:24:42 +02:00
Efraim Flashner bcc6551083
gnu: ccl: Patch absolute file-name.
* gnu/packages/lisp.scm (ccl)[arguments]: In 'pre-build add substitution
for /bin/pwd.
2018-02-28 22:11:21 +02:00
Efraim Flashner da1b30bd93
gnu: keepassxc: Enable various plugins.
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add
configure-flags to enable favicons, browser integration and ssh-agent.
[inputs]: Add curl, libsodium.
2018-02-28 22:11:21 +02:00
Efraim Flashner 3374dcc78c
gnu: keepassxc: Update to 2.3.0.
* gnu/packages/password-utils.scm (keepassxc): Update to 2.3.0.
2018-02-28 22:11:17 +02:00
Marius Bakke 53453d7acc
gnu: wavpack: Fix CVE-2018-6767.
* gnu/packages/patches/wavpack-CVE-2018-6767.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/audio.scm (wavpack)[source](patches): Add it.
2018-02-28 20:29:46 +01:00
Marius Bakke 6b3ee23b7a
gnu: ldb: Update to 1.3.2.
* gnu/packages/samba.scm (ldb): Update to 1.3.2.
2018-02-28 20:17:31 +01:00
Marius Bakke 954b677195
gnu: p11-kit: Update to 0.23.10.
* gnu/packages/tls.scm (p11-kit): Update to 0.23.10.
2018-02-28 20:13:41 +01:00
Marius Bakke f03ec1e595
gnu: feh: Update to 2.24.
* gnu/packages/image-viewers.scm (feh): Update to 2.24.
2018-02-28 20:01:03 +01:00
Tobias Geerinckx-Rice 8297ff0f93
gnu: pcre2: Update to 10.31.
* gnu/packages/pcre.scm (pcre2): Update to 10.31.
[source]: Remove upstreamed patches.
* gnu/packages/patches/pcre2-CVE-2017-7186.patch: Delete this file...
* gnu/packages/patches/pcre2-CVE-2017-8786.patch: ...and this one.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-02-28 18:23:31 +01:00
Tobias Geerinckx-Rice 3d185f5562
gnu: cups-filters: Update to 1.20.1.
* gnu/packages/cups.scm (cups-filters): Update to 1.20.1.
2018-02-28 18:06:19 +01:00
Alex Vong 6f45e45d4d
gnu: Add youtube-viewer.
* gnu/packages/video.scm (youtube-viewer): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong b5bbcda3ee
gnu: Add perl-gtk2.
* gnu/packages/gtk.scm (perl-gtk2): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong ee6911c7c0
gnu: Add perl-pango.
* gnu/packages/gtk.scm (perl-pango): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:59:55 +01:00
Alex Vong 451f6e30eb
gnu: Add perl-glib.
* gnu/packages/glib.scm (perl-glib): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
Alex Vong 4e028d7ad2
gnu: Add perl-cairo.
* gnu/packages/gtk.scm (perl-cairo): New public variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-28 16:57:33 +01:00
Marius Bakke b0a2c9cbe9
gnu: python-webencodings: Update to 0.5.1.
* gnu/packages/python-web.scm (python-webencodings): Update to 0.5.1.
2018-02-28 16:02:55 +01:00
Marius Bakke 4ef80b2f58
gnu: python-html5lib: Update to 1.0.1.
* gnu/packages/python-web.scm (python-html5lib): Update to 1.0.1.
2018-02-28 16:01:43 +01:00
Marius Bakke a846f29dff
gnu: python-netifaces: Update to 0.10.6.
* gnu/packages/python.scm (python-netifaces): Update to 0.10.6.
[source](uri): Use PYPI-URI.
[home-page]: Update.
2018-02-28 15:40:44 +01:00
Marius Bakke fb2477f6d2
gnu: python-psutil: Update to 5.4.3.
* gnu/packages/python.scm (python-psutil): Update to 5.4.3.
[properties]: Declare python2 variant.
(python2-psutil): Propagate PYTHON2-ENUM34.
2018-02-28 14:17:55 +01:00
Marius Bakke 836de07a47
gnu: python-wrapt: Update to 1.10.11.
* gnu/packages/python.scm (python-wrapt): Update to 1.10.11.
2018-02-28 13:59:03 +01:00
Marius Bakke f8a4547c29
gnu: python-oslo.log: Update to 3.36.0.
* gnu/packages/openstack.scm (python-oslo.log): Update to 3.36.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove.
[propagated-inputs]: Add PYTHON-DATEUTIL, PYTHON-MONOTONIC, PYTHON-PBR and
PYTHON-PYINOTIFY.
[native-inputs]: Remove PYTHON-BABEL, PYTHON-ISO8601 and PYTHON-PBR.  Add
PYTHON-SUBUNIT, PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:03 +01:00
Marius Bakke db3e631db8
gnu: python-monotonic: Update to 1.4.
* gnu/packages/time.scm (python-monotonic): Update to 1.4.
[source]: Use PYPI-URI.
[arguments]: Explicitly disable tests.
2018-02-28 13:59:03 +01:00
Marius Bakke 2441239842
gnu: python-msgpack: Run the tests.
* gnu/packages/python.scm (python-msgpack)[arguments]: Add #:modules.  Replace
CHECK-PHASE with pytest invocation.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-28 13:59:03 +01:00
Marius Bakke 0075644662
gnu: python-msgpack: Update to 0.5.6.
* gnu/packages/python.scm (python-msgpack): Update to 0.5.6.
[source, home-page]: Adjust to msgpack-python->msgpack rename.
2018-02-28 13:59:02 +01:00
Marius Bakke caf3713ad5
gnu: python-oslo.serialization: Update to 2.24.0.
* gnu/packages/openstack.scm (python-oslo.serialization): Update to 2.24.0.
[arguments]: Remove field.
[propagated-inputs]: Remove PYTHON-ISO8601 and PYTHON-SIMPLEJSON.  Add
PYTHON-MSGPACK.
[native-inputs]: Remove PYTHON-BABEL.
[properties]: New field.
(python2-oslo.serialization)[native-inputs]: Add PYTHON2-IPADDRESS.
2018-02-28 13:59:02 +01:00
Marius Bakke 32bb0c617b
gnu: python-oslo.context: Update to 2.20.0.
* gnu/packages/openstack.scm (python-oslo.context): Update to 2.20.0.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR and PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-COVERAGE, PYTHON-MOCK,
PYTHON-OS-CLIENT-CONFIG, PYTHON-OSLOSPHINX and PYTHON-SPHINX.  Add
PYTHON-FIXTURES.
2018-02-28 13:59:02 +01:00
Marius Bakke 24f4400aa6
gnu: Add python-pyinotify.
* gnu/packages/python.scm (python-pyinotify, python2-pyinotify): New
variables.
2018-02-28 13:59:02 +01:00
Marius Bakke b51fbd6d6e
gnu: python-oslo.utils: Update to 3.35.0.
* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.35.0.
[source](snippet): Remove.
[propagated-inputs]: Add PYTHON-PYPARSING.
[native-inputs]: Add PYTHON-DDT, PYTHON-FIXTURES, PYTHON-TESTREPOSITORY and
PYTHON-TESTTOOLS.  Remove PYTHON-MOX3.
2018-02-28 13:59:02 +01:00
Marius Bakke 9e4546a2be
gnu: python-oslo.config: Update to 5.2.0.
* gnu/packages/openstack.scm (python-oslo.config): Update to 5.2.0.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-DEBTCOLLECTOR, PYTHON-OSLO.I18N, PYTHON-PBR,
PYTHON-RFC3986 and PYTHON-PYYAML.
[native-inputs]: Remove PYTHON-PBR and PYTHON-I18N.  Add PYTHON-BANDIT,
PYTHON-COVERAGE, PYTHON-OPENSTACKDOCSTHEME, PYTHON-RENO, PYTHON-SPHINX-1.6,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
2018-02-28 13:59:02 +01:00
Marius Bakke a2803e206b
gnu: python-debtcollector: Update to 1.19.0.
* gnu/packages/openstack.scm (python-debtcollector): Update to 1.19.0.
[arguments]: Remove field.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-BABEL.  Add PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS.
[properties]: Declare python2 variant.
(python2-debtcollector)[propaged-inputs]: Add PYTHON-FUNCSIGS.
2018-02-28 13:59:02 +01:00
Marius Bakke c822e880fe
gnu: python-oslo.i18n: Update to 3.19.0.
* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.19.0.
[arguments]: Remove field.
2018-02-28 13:59:01 +01:00
Marius Bakke 231bd07e8d
gnu: python-bandit: Update to 1.4.0.
* gnu/packages/openstack.scm (python-bandit): Update to 1.4.0.
[source](uri): Use PYPI-URI.
[arguments]: Run CHECK-PHASE after INSTALL-PHASE.
[propagated-inputs]: Remove PYTHON-APPDIRS.  Add PYTHON-GITPYTHON.
[native-inputs]: Remove PYTHON-PBR.  Add PYTHON-BEAUTIFULSOUP4,
PYTHON-OSLOTEST and PYTHON-SUBUNIT.
2018-02-28 13:59:01 +01:00
Marius Bakke 8e6177204e
gnu: Add python-gitpython.
* gnu/packages/version-control.scm (python-gitpython, python2-gitpython): New
public variables.
2018-02-28 13:59:01 +01:00
Marius Bakke ea4be20af0
gnu: Add python-gitdb.
* gnu/packages/version-control.scm (python-gitdb, python2-gitdb): New public
variables.
2018-02-28 13:59:01 +01:00
Marius Bakke 1cccdca231
gnu: python-stevedore: Update to 1.28.0.
* gnu/packages/openstack.scm (python-stevedore): Update to 1.28.0.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR, PYTHON-DISCOVER, PYTHON-DOCUTILS,
PYTHON-OSLOSPHINX and PYTHON-OSLOTEST.  Replace PYTHON-SPHINX with
PYTHON-SPHINX-1.6.
2018-02-28 13:59:01 +01:00
Marius Bakke 3e3302acc5
gnu: Add python-rfc3986.
* gnu/packages/python.scm (python-rfc3986, python2-rfc3986): New public
variables.
2018-02-28 13:59:01 +01:00
Marius Bakke 79d9effa51
gnu: python2-stevedore: Enable tests.
* gnu/packages/openstack.scm (python-stevedore)[properties]: Remove.
(python2-stevedore)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
Marius Bakke 8fa28808a6
gnu: python-oslo.context: Enable tests.
* gnu/packages/openstack.scm (python-oslo.context)[arguments]: Remove.
2018-02-28 13:59:00 +01:00
Marius Bakke 39033c8f57
gnu: python2-bandit: Enable tests.
* gnu/packages/openstack.scm (python-bandit)[properties]: Remove.
(python2-bandit): Don't use STRIP-PYTHON2-VARIANT.
2018-02-28 13:59:00 +01:00
Marius Bakke 0ab4c39285
gnu: python2-swiftclient: Enable tests.
* gnu/packages/openstack.scm (python-swiftclient)[properties]: Declare python2
variant.
(python2-swiftclient): Use STRIP-PYTHON2-VARIANT.
[propagated-inputs]: Remove PYTHON2-REQUESTS.
[arguments]: Remove.
[native-inputs]: Delete.
2018-02-28 13:59:00 +01:00
Marius Bakke b39667cdcb
gnu: python-mox3: Update to 0.24.0.
* gnu/packages/openstack.scm (python-mox3): Update to 0.24.0.
[source](patches): New field.
[arguments]: Remove.
[native-inputs]: Add PYTHON-OPENSTACKDOCSTHEME and PYTHON-SUBUNIT.  Replace
PYTHON-SPHINX with PYTHON-SPHINX-1.6.  Move PYTHON-PBR and PYTHON-FIXTURES ...
[propagated-inputs]: ... here.  New field.
[description]: Don't mention explicit Python versions.
* gnu/packages/patches/python-mox3-python3.6-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2018-02-28 13:59:00 +01:00
Marius Bakke 7a565dc9ec
gnu: Add python-openstackdocstheme.
* gnu/packages/openstack.scm (python-openstackdocstheme,
python2-openstackdocstheme): New public variables.
2018-02-28 13:59:00 +01:00
Marius Bakke 3719d0edf2
gnu: python-sphinx@1.6: Add python2 variant.
* gnu/packages/python.scm (python-sphinx-1.6)[properties]: Declare python2 variant.
(python2-sphinx-1.6): New public variable.
2018-02-28 13:58:43 +01:00
Marius Bakke 9c77852e19
gnu: python-fixtures: Update to 3.0.0.
* gnu/packages/check.scm (python-fixtures-bootstrap): Update to 3.0.0.
2018-02-28 13:58:43 +01:00
Marius Bakke d2ae66b756
gnu: python-reno: Update to 2.7.0.
* gnu/packages/openstack.scm (python-reno): Update to 2.7.0.
[propagated-inputs]: Remove PYTHON-BABEL.  Add PYTHON-PBR.
[native-inputs]: Remove PYTHON-PBR and PYTHON-OSLOTEST.  Add PYTHON-DOCUTILS
and PYTHON-SPHINX.
2018-02-28 13:58:43 +01:00
Marius Bakke be3f88c29c
gnu: python-oslotest: Update to 3.2.0.
* gnu/packages/openstack.scm (python-oslotest): Update to 3.2.0.
[source](uri): Use PYPI-URI.
[native-inputs]: Move PYTHON-OS-CLIENT-CONFIG, PYTHON-SIX, PYTHON-SUBUNIT,
PYTHON-TESTREPOSITORY and PYTHON-TESTTOOLS ...
[propagated-inputs]: ... here.
[properties]: Remove field.
(python2-oslotest)[arguments]: Remove.
2018-02-28 13:58:43 +01:00
Marius Bakke ae565a9a6d
gnu: python-testscenarios: Update to 0.5.0.
* gnu/packages/check.scm (python-testscenarios-bootstrap): Update to 0.5.0.
[source](uri): Use PYPI-URI.
[arguments]: Replace CHECK-PHASE.
[propagated-inputs]: Add PYTHON-PBR-MINIMAL.
(python-testscenarios)[propagated-inputs]: Add PYTHON-PBR.
2018-02-28 13:58:43 +01:00
Marius Bakke 8b93f7e437
gnu: python-testtools: Update to 2.3.0.
* gnu/packages/check.scm (python-testtools-bootstrap,
python2-testtools-bootstrap): New public variables.
(python-testtools): Inherit.
[arguments]: Remove old.  Replace CHECK-PHASE with custom command.
[propagated-inputs]: Add PYTHON-FIXTURES, PYTHON-PBR, PYTHON-SIX,
PYTHON-TRACEBACK2 and PYTHON-UNITTEST2.
[native-inputs]: Add PYTHON-TESTSCENARIOS-BOOTSTRAP.
(python-testscenarios-bootstrap, python2-testscenarios-bootstrap): New public
variables.
(python-testscenarios): Adjust accordingly.
[propagated-inputs]: Replace PYTHON-TESTTOOLS with PYTHON-TESTTOOLS-BOOTSTRAP.
(python-subunit-bootstrap, python2-subunit-bootstrap): New public variables.
(python-subunit): Inherit.
(python-fixtures-bootstrap)[native-inputs]: Replace PYTHON-TESTTOOLS with
PYTHON-TESTTOOLS-BOOTSTRAP.
(python-testrepository-bootstrap)[native-inputs]: Replace PYTHON-SUBUNIT and
PYTHON-TESTTOOLS with PYTHON-SUBUNIT-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTSCENARIOS and PYTHON-TESTTOOLS with
PYTHON-TESTSCENARIOS-BOOTSTRAP and PYTHON-TESTTOOLS-BOOTSTRAP.
2018-02-28 13:58:43 +01:00
Marius Bakke 881ed3f868
gnu: python-extras: Update to 1.0.0.
* gnu/packages/python.scm (python-extras): Update to 1.0.0.
[source](uri): Use PYPI-URI.
2018-02-28 13:58:43 +01:00
Marius Bakke bc69104a44
gnu: python-testresources: Update to 2.0.1.
* gnu/packages/check.scm (python-testresources-bootstrap,
python2-testresources-bootstrap): New public variables.
(python-testresources): Adjust accordingly.
[propagated-inputs]: Add PYTHON-PBR.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTTOOLS.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace
PYTHON-TESTRESOURCES with PYTHON-TESTRESOURCES-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
Marius Bakke 151f32a74b
gnu: python-subunit: Update to 1.2.0.
* gnu/packages/check.scm (python-subunit): Update to 1.2.0.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove PYTHON-MIMEPARSE.  Add PYTHON-TESTTOOLS.
[native-inputs]: Add PYTHON-FIXTURES and PYTHON-TESTSCENARIOS.
2018-02-28 13:58:42 +01:00
Marius Bakke 335c9e3902
gnu: python-fixtures: Propagate python-pbr.
* gnu/packages/check.scm (python-fixtures-bootstrap,
python2-fixtures-bootstrap, python-testrepository-bootstrap,
python2-testrepository-bootstrap): New public variables.
(python-fixtures): Adjust accordingly.
(python-testrepository): Likewise.
[native-inputs]: Remove PYTHON-PBR-MINIMAL.
* gnu/packages/python.scm (python-pbr)[native-inputs]: Replace PYTHON-FIXTURES
and PYTHON-TESTREPOSITORY WITH PYTHON-FIXTURES-BOOTSTRAP and
PYTHON-TESTREPOSITORY-BOOTSTRAP.
2018-02-28 13:58:42 +01:00
Efraim Flashner bd041e7fd3
gnu: dionysus: Update to 1.4.0.
* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
2018-02-28 14:42:36 +02:00
Tobias Geerinckx-Rice 971d232b27
gnu: r-httpuv: Update to 1.3.6.
* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.
2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice 1143450c14
gnu: dblatex: Update to 0.3.10.
* gnu/packages/docbook.scm (dblatex): Update to 0.3.10.
[source]: Remove patch.
* gnu/packages/patches/dblatex-remove-multirow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-28 04:13:19 +01:00
Tobias Geerinckx-Rice bf5e7189dc
gnu: perl-yaml-libyaml: Update to 0.69.
* gnu/packages/perl.scm (perl-yaml-libyaml): Update to 0.69.
2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 3199acb2cf
gnu: perl-yaml: Update to 1.24.
* gnu/packages/perl.scm (perl-yaml): Update to 1.24.
[source]: Update origin URI.
2018-02-28 04:13:18 +01:00
Tobias Geerinckx-Rice 047cd2be07
gnu: perl-variable-magic: Update to 0.62.
* gnu/packages/perl.scm (perl-variable-magic): Update to 0.62.
2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 91b73dba9d
gnu: perl-throwable: Update to 0.200013.
* gnu/packages/perl.scm (perl-throwable): Update to 0.200013.
2018-02-28 04:13:17 +01:00
Tobias Geerinckx-Rice 1d4e6e1756
gnu: perl-text-diff: Update to 1.45.
* gnu/packages/perl.scm (perl-text-diff): Update to 1.45.
2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice b0821f6b8d
gnu: perl-path-class: Update to 0.37.
* gnu/packages/perl.scm (perl-path-class): Update to 0.37.
2018-02-28 04:13:16 +01:00
Tobias Geerinckx-Rice 24397ab1a3
gnu: perl-list-moreutils-xs: Update to 0.428.
* gnu/packages/perl.scm (perl-list-moreutils-xs): Update to 0.428.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 89badfbcc3
gnu: perl-import-into: Update to 1.002005.
* gnu/packages/perl.scm (perl-import-into): Update to 1.002005.
[source]: Update origin URI.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice a32f136547
gnu: perl-extutils-installpaths: Update to 0.011.
* gnu/packages/perl.scm (perl-extutils-installpaths): Update to 0.011.
2018-02-28 04:13:15 +01:00
Tobias Geerinckx-Rice 63651b8057
gnu: perl-devel-globaldestruction: Update to 0.14.
* gnu/packages/perl.scm (perl-devel-globaldestruction): Update to 0.14.
2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice 92a37fd224
gnu: perl-config-autoconf: Update to 0.315.
* gnu/packages/perl.scm (perl-config-autoconf): Update to 0.315.
2018-02-28 04:13:14 +01:00
Tobias Geerinckx-Rice e87ab2e895
gnu: perl-data-optlist: Update to 0.110.
* gnu/packages/perl.scm (perl-data-optlist): Update to 0.110.
2018-02-28 04:13:13 +01:00
Ludovic Courtès 29d37e999c
gnu: make-bootstrap: Build grep without PCRE support.
Partly fixes <https://bugs.gnu.org/24841>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

This fixes cross-compilation of the statically-linked grep.

* gnu/packages/make-bootstrap.scm (%static-inputs): Add 'inputs' field
for grep.
2018-02-28 00:33:48 +01:00
Tobias Geerinckx-Rice 7349fed591
gnu: perl-x11-xcb: Update to 0.17.
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.17.
2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice fa964e96e6
gnu: perl-xml-sax-base: Update to 1.09.
* gnu/packages/xml.scm (perl-xml-sax-base): Update to 1.09.
2018-02-27 16:50:00 +01:00
Tobias Geerinckx-Rice 5cacd3144e
gnu: tig: Update to 2.3.3.
* gnu/packages/version-control.scm (tig): Update to 2.3.3.
[arguments]: Substitute INVOKE for SYSTEM*.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 4886d5b23c
gnu: spin2cpp: Update to 3.6.4.
* gnu/packages/embedded.scm (spin2cpp): Update to 3.6.4.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 7da5db8e45
gnu: godot: Update to 3.0.1.
* gnu/packages/game-development.scm (godot): Update to 3.0.1.
[arguments]: End phases with #t and remove redundant MKDIR-P.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice 130acf72f7
gnu: love: Fix build with luajit@2.1.0-beta3.
* gnu/packages/game-development.scm (love)[source]: Add snippet fixing Lua version detection.
2018-02-27 16:49:59 +01:00
Tobias Geerinckx-Rice d5d7d26df7
gnu: perl-gd: Update to 2.68.
* gnu/packages/gd.scm (perl-gd): Update to 2.68.
[source]: Remove obsolete patch.
[native-inputs]: Remove perl-module-build.
[inputs]: Use canonical package names and order alphabetically.
[arguments]: Replace #:module-build-flags with fewer #:make-maker-flags,
enable #:tests?, and remove ‘clear-autogenerated-files’ phase.
* gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 2504fd3794
gnu: xfburn: Update to 0.5.5.
* gnu/packages/xfce.scm (xfburn): Update to 0.5.5.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice c26d74dde6
gnu: phonon: Update to 4.10.0.
* gnu/packages/kde-frameworks.scm (phonon): Update to 4.10.0.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 9e9a211f9d
gnu: soxr: Update to 0.1.3.
* gnu/packages/audio.scm (soxr): Update to 0.1.3.
2018-02-27 16:49:58 +01:00
Tobias Geerinckx-Rice 713b519eaa
gnu: fluidsynth: Update to 1.1.10.
* gnu/packages/audio.scm (fluidsynth): Update to 1.1.10.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 0c548d9875
gnu: youtube-dl: Update to 2018.02.26.
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.26.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 4f3506a48a
gnu: thermald: Update to 1.7.1.
* gnu/packages/admin.scm (thermald): Update to 1.7.1.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
2018-02-27 16:49:57 +01:00
Tobias Geerinckx-Rice 63f931cf82
gnu: gcab: Update to 1.1.
* gnu/packages/package-management.scm (gcab): Update to 1.1.
[source]: Remove git dependency in a snippet.
2018-02-27 16:49:57 +01:00
Kei Kebreau 36d48a536e
gnu: mbedtls-apache: Fix upstream typo.
A typo was introduced in version 2.7.0 that caused the hiawatha package to
fail to build. See https://github.com/ARMmbed/mbedtls/pull/1362.

* gnu/packages/tls.scm (mbedtls-apache)[source]: Add snippet to fix typo.
2018-02-27 10:33:59 -05:00
Ludovic Courtès 87b6305e72
gnu: polkit: Fix 'invoke' call.
* gnu/packages/polkit.scm (polkit)[arguments] <'install>: Add 'apply'.
Fixes a regression introduced in 3c4bbb4c52.
2018-02-27 09:22:24 +01:00
Chris Marusich a1df45e904
gnu: commencement: Add commentary regarding grafts.
* gnu/packages/commencement.scm: Add comments that were originally
  included only in the Git commit message of
  f00b85ff8d.

Co-Authored-By: Ludovic Courtès <ludo@gnu.org>
2018-02-27 05:29:37 +01:00
Mark H Weaver 701cfb9b33
gnu: linux-libre: Update to 4.15.6.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.6.
(%linux-libre-hash): Update hash.
2018-02-26 21:32:34 -05:00
Mark H Weaver cd2bcc9bda
gnu: linux-libre@4.14: Update to 4.14.22.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.22.
(%linux-libre-4.14-hash): Update hash.
2018-02-26 21:31:46 -05:00
Mark H Weaver 5de50beda3
gnu: linux-libre@4.9: Update to 4.9.84.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.84.
2018-02-26 21:31:07 -05:00
Mark H Weaver 26204b81f9
gnu: linux-libre@4.4: Update to 4.4.118.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.118.
2018-02-26 21:30:16 -05:00
Nicolas Goaziou 7ad05d8526
gnu: emacs-org, emacs-org-contrib: Update to 20180226
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180226, aka Org 9.1.7.
2018-02-27 00:32:06 +01:00
Leo Famulari fcbb8461a4
gnu: Add go@1.10.
Building Go 1.10 with the Go 1.4 bootstrap, Thread Sanitizer from GCC 5
finds a data race during the the test suite of Go 1.10. With GCC 6, the
race doesn't seem to be present.

.##### ../misc/cgo/testsanitizers
--- FAIL: TestShared (0.03s)
    --- FAIL: TestShared/tsan_shared (2.54s)
        cshared_test.go:71: `/tmp/guix-build-go-1.10.drv-0/TestShared367937240/tsan_shared` exited with exit status 66
                ==================
                WARNING: ThreadSanitizer: data race (pid=28778)
                  Write of size 8 at 0x7ffff5495c30 by thread T1:
                    #0 pthread_attr_getstacksize <null> (tsan_shared+0x00000041be82)
                    #1 x_cgo_init <null> (libtsan_shared.so+0x00000008aeaf)
                    #2 runtime.rt0_go /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:199 (libtsan_shared.so+0x000000081586)

                  Previous write of size 8 at 0x7ffff5495c30 by main thread:
                    #0 <null> <null> (0x000000000001)

                  Location is stack of thread T1.

                  Thread T1 (tid=28786, running) created by main thread at:
                    #0 pthread_create <null> (tsan_shared+0x00000040c794)
                    #1 _cgo_try_pthread_create <null> (libtsan_shared.so+0x00000008ad70)
                    #2 x_cgo_sys_thread_create <null> (libtsan_shared.so+0x00000008ab12)
                    #3 _rt0_amd64_lib /tmp/guix-build-go-1.10.drv-0/go/src/runtime/asm_amd64.s:56 (libtsan_shared.so+0x0000000813b6)

                SUMMARY: ThreadSanitizer: data race ??:0 __interceptor_pthread_attr_getstacksize

* gnu/packages/golang.scm (go-1.10): New variable.
(go-1.4)[native-inputs]: Use gcc:lib version 6.
2018-02-26 17:34:14 -05:00
Leo Famulari 13d9794d8f
gnu: Add RawTherapee.
* gnu/packages/photo.scm (rawtherapee): New variable.
2018-02-26 17:05:46 -05:00
Leo Famulari bc806b0c12
gnu: Add libiptcdata.
* gnu/packages/image.scm (libiptcdata): New variable.
2018-02-26 17:05:46 -05:00
Roel Janssen 5815e3bc94
gnu: Add emacs-nov.
* gnu/packages/emacs.scm (emacs-nov): New variable.
2018-02-26 22:27:36 +01:00
Roel Janssen c74b8b41cf
gnu: Add emacs-esxml.
* gnu/packages/emacs.scm (emacs-esxml): New variable.
2018-02-26 22:27:31 +01:00
Marius Bakke 6d796220c4
gnu: ninja: Patch /bin/echo in the correct file.
This is a follow-up to commit d0de4c40e2.

* gnu/packages/ninja.scm (ninja)[arguments]: Adjust substitution.
2018-02-26 20:58:14 +01:00
Marius Bakke d0de4c40e2
gnu: ninja: Patch hard-coded /bin/echo reference.
Solves a test failure on systems where open file limits are high enough for
this test to run.  See <https://bugs.gnu.org/30601>.

* gnu/packages/ninja.scm (ninja)[arguments]: Add substitution.
2018-02-26 20:37:04 +01:00
Tobias Geerinckx-Rice d504de2655
gnu: assword: Update to 0.11.
* gnu/packages/password-utils.scm (assword): Update to 0.11.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice fc38e317cd
gnu: python-cffi: Update phase style.
* gnu/packages/libffi.scm (python-cffi)[arguments]: Substitute INVOKE
for SYSTEM*, end phases with #t, and remove unneeded bits from the
‘install-doc’ phase.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice b737530569
gnu: python-cffi: Update to 1.11.4.
* gnu/packages/libffi.scm (python-cffi): Update to 1.11.4.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 4e501d0642
gnu: perl-scalar-list-utils: Update to 1.50.
* gnu/packages/perl.scm (perl-scalar-list-utils): Update to 1.50.
2018-02-26 20:13:11 +01:00
Tobias Geerinckx-Rice 0ae079ec2a
gnu: Add nghttp2.
* gnu/packages/web.scm (nghttp2): New public variable.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 9de33cc726
gnu: ruby-ffi: Update to 1.9.22.
* gnu/packages/libffi.scm (ruby-ffi): Update to 1.9.22.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 4ff3484f1e
gnu: libpsl: Update to 0.20.0.
* gnu/packages/web.scm (libpsl): Update to 0.20.0.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 57e7d7486b
gnu: Use HTTPS for supported freedesktop.org home pages.
* gnu/packages/fontutils.scm (fontconfig)[home-page]: Use HTTPS.
* gnu/packages/freedesktop.scm (python-pyxdg, accountsservice)
(modem-manager, telepathy-mission-control, telepathy-mission-control)
(colord-gtk, desktop-file-utils)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (libspectre)[home-page]: Likewise.
* gnu/packages/glib.scm (dbus, dbus-glib, telepathy-glib)[home-page]:
Likewise.
* gnu/packages/gnome.scm (shared-mime-info, hicolor-icon-theme)
(libxklavier, colord, upower)[home-page]: Likewise.
* gnu/packages/gstreamer.scm (orc, python-gst)[home-page]: Likewise.
* gnu/packages/libcanberra.scm (sound-theme-freedesktop)[home-page]:
Likewise.
* gnu/packages/libreoffice.scm (libexttextcat)[home-page]: Likewise.
* gnu/packages/polkit.scm (polkit-gnome, polkit-gnome)[home-page]:
Likewise.
* gnu/packages/pulseaudio.scm (pavucontrol)[home-page]: Likewise.
* gnu/packages/python.scm (python-dbus)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (startup-notification)[home-page]: Likewise.
2018-02-26 20:13:10 +01:00
Tobias Geerinckx-Rice 3c4bbb4c52
gnu: polkit: Update phase & snippet style.
* gnu/packages/polkit.scm (polkit)[source]: End snippet with #t.
[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 73a3e98f01
gnu: perl-xml-libxslt: Update to 1.96.
* gnu/packages/xml.scm (perl-xml-libxslt): Update to 1.96.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 12505baed9
gnu: perl-net-smtp-ssl: Update to 1.04.
* gnu/packages/web.scm (perl-net-smtp-ssl): Update to 1.04.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 6f8d1f7274
gnu: perl-http-server-simple: Update to 0.52.
* gnu/packages/web.scm (perl-http-server-simple): Update to 0.52.
2018-02-26 20:13:09 +01:00
Tobias Geerinckx-Rice 24a300b1bd
gnu: dvdstyler: Remove hard-coded version string.
* gnu/packages/cdrom.scm (dvdstyler)[arguments]: Remove a hard-coded
version string from the docbook-xsl search path.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 74b977d725
gnu: libdvbpsi: Update to 1.3.2.
* gnu/packages/video.scm (libdvbpsi): Update to 1.3.2.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 383ad03e83
gnu: tinc: Update to 1.0.33.
* gnu/packages/vpn.scm (tinc): Update to 1.0.33.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice 7ed1abfa81
gnu: gource: Update to 0.48.
* gnu/packages/version-control.scm (gource): Update to 0.48.
2018-02-26 20:13:08 +01:00
Tobias Geerinckx-Rice d5a352937a
gnu: youtube-dl: Update to 2018.02.22.
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.22.
2018-02-26 20:13:07 +01:00
Tobias Geerinckx-Rice 54d82c81d5
gnu: libfilezilla: Update to 0.12.1.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.1.
2018-02-26 20:13:07 +01:00
Ludovic Courtès ecbea1bcb1
gnu: automake: Add 1.16.
* gnu/packages/autotools.scm (automake-1.16): New variable.
2018-02-26 19:47:54 +01:00
Tobias Geerinckx-Rice cc35533304
gnu: automake: Update to 1.16.
* gnu/packages/autotools.scm (automake): Update to 1.16.
[arguments]: Fix indentation and end all phases with #t.
2018-02-26 18:59:30 +01:00
Marius Bakke cb723be5b9
gnu: python-scandir: Run the test suite.
* gnu/packages/python.scm (python-scandir)[arguments]: Replace CHECK-PHASE.
2018-02-26 05:03:22 +01:00
Marius Bakke 71a2d4176b
gnu: python-scandir: Update to 1.7.
* gnu/packages/python.scm (python-scandir): Update to 1.7.
[description]: Mention that the Python3 variant is obsolete.
2018-02-26 05:01:16 +01:00
Marius Bakke ea3f45a5a0
gnu: python2-pathlib2: Update to 2.3.0.
* gnu/packages/python.scm (python2-pathlib2): Update to 2.3.0.
[propagated-inputs]: Add PYTHON2-SCANDIR.
2018-02-26 04:54:33 +01:00
Marius Bakke f160557b95
gnu: python-ipython: Update to 5.5.0.
* gnu/packages/python.scm (python-ipython): Update to 5.5.0.
2018-02-26 04:50:30 +01:00
Marius Bakke ff856cfdcc
gnu: python-pickleshare: Run the tests.
* gnu/packages/databases.scm (python-pickleshare)[arguments]: Replace CHECK-PHASE.
[native-inputs]: Add PYTHON-PYTEST.
2018-02-26 04:50:30 +01:00
Marius Bakke 76397e12ad
gnu: python2-pathlib2: Propagate python2-six.
* gnu/packages/python.scm (python2-pathlib2)[native-inputs]: Move to ...
[propagated-inputs] ... here.
2018-02-26 04:50:29 +01:00
Marius Bakke ed519b3c1f
gnu: python-pickleshare: Update to 0.7.4.
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.4.
[source](uri): Use PYPI-URI.
[propagated-inputs]: Remove.
[properties]: Delay python2 variant.
(python2-pickleshare)[propagated-inputs]: Add PYTHON2-PATHLIB2.
2018-02-26 04:49:52 +01:00
Tobias Geerinckx-Rice e2e3c55252
Revert "gnu: gnurl: Add HTTP/2 support."
This reverts unintentional commit 3d2d5ebffae6979376d64a6441a44eb4369a6.
See <https://lists.gnu.org/archive/html/guix-devel/2018-02/msg00486.html>.
2018-02-26 04:41:48 +01:00
Marius Bakke eddb9dacd2
gnu: behave: Update to 1.2.6.
* gnu/packages/check.scm (behave): Update to 1.2.6.
[source](uri): Adjust file extension.
[native-inputs]: Add PYTHON-PATHPY and PYTHON-PYTEST.
2018-02-26 03:05:58 +01:00
Marius Bakke b8509387d1
gnu: python-pathpy: Update to 11.0.
* gnu/packages/python.scm (python-pathpy): Update to 11.0.
[source](uri): Use PYPI-URI.
[outputs]: Remove field.
[arguments]: Set #:tests? #f.  Remove #:phases.
2018-02-26 03:01:48 +01:00
Marius Bakke 557f8f212e
gnu: python-parse-type: Update to 0.4.2.
* gnu/packages/python.scm (python-parse-type): Update to 0.4.2.
[source](uri): Use PYPI-URI.
[arguments]: Remove field.
2018-02-26 02:42:17 +01:00
Marius Bakke 2115bde302
gnu: python-parse: Update to 1.8.2.
* gnu/packages/patches/python-parse-too-many-fields.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/python.scm (python-parse): Update to 1.8.2.
[source](patches): Remove.
[arguments]: Use INVOKE instead of SYSTEM*.
2018-02-26 02:39:15 +01:00
ng0 f58764d8ed
gnu: neomutt: Update to 20180223.
* gnu/packages/mail.scm (neomutt): Update to 20180223.
[native-inputs]: Use 'docbook-xml-4.2'.
[arguments]: Remove 'fix-docbook' phases.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 02:24:34 +01:00
Alex ter Weele f61682e7ea
gnu: Add agda.
* gnu/packages/agda.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add adga.scm.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:42:35 +01:00
Alex ter Weele 7df5669f39
gnu: Add ghc-uri-encode.
* gnu/packages/haskell-web.scm (ghc-uri-encode): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:36:16 +01:00
Alex ter Weele abfec9b375
gnu: ghc-hashtables: Allow newer version of vector.
* gnu/packages/haskell.scm (ghc-hashtables)[arguments]: Allow newer version of
  vector.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:31:05 +01:00
Alex ter Weele 9f29ecc1b1
gnu: ghc-edit-distance: Allow newer version of QuickCheck.
* gnu/packages/haskell.scm (ghc-edit-distance)[arguments]: Allow running tests
  with newer version of QuickCheck.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:29:54 +01:00
Alex Vong e5f9540691
gnu: emacs-ahungry-theme: Update to 1.10.0.
* gnu/packages/emacs.scm (emacs-ahungry-theme): Update to 1.10.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:21:01 +01:00
Andy Patterson 543cf6fd37
gnu: cl-bordeaux-threads: Update to commit 354abb0a.
This commit includes a fix which makes the package compatible asdf 3.3.1.

* gnu/packages/lisp.scm (sbcl-bordeaux-threads): Update to commit 354abb0a.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:15:23 +01:00
Andy Patterson 04ab38b7ee
gnu: ccl: Update to 1.11.5.
* gnu/packages/lisp.scm (ccl): Update to 1.11.5.
[inputs]: Update ccl to its new hosting location.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-26 01:15:12 +01:00
Efraim Flashner 849c898933
gnu: mpfr: Update to 4.0.1.
* gnu/packages/multiprecision.scm (mpfr): Update to 4.0.1.
2018-02-25 20:49:05 +02:00
Efraim Flashner 1462b45657
gnu: enca: Update to 1.19.
* gnu/packages/textutils.scm (enca): Update to 1.19.
[inputs]: Remove recode.
[arguments]: Allow parallel tests.
2018-02-25 20:47:55 +02:00
Efraim Flashner 20a792b553
gnu: recode: Update to 3.7.
* gnu/packages/textutils.scm (recode): Update to 3.7.
[source]: Update source uri and download type. Add snippet to remove
cythonized source.
[native-inputs]: Add python2-cython.
[arguments]: Remove custom phases.
[home-page]: Update to new upstream.
[license]: Update license.
2018-02-25 20:47:51 +02:00
Marius Bakke a2f0b01221
gnu: fribidi: Update to 1.0.1.
* gnu/packages/fribidi.scm (fribidi): Update to 1.0.1.
[source](uri): Change to new GitHub URI.
[home-page]: Update to redirected URL.
2018-02-25 18:35:25 +01:00
Marius Bakke 9d2749f62f
gnu: kodi: Update to 18.0_alpha-8.ec16dbc.
* gnu/packages/kodi.scm (libdvdnav/kodi): Update to 6.0.0-Leia-Alpha-1.
(libdvdread/kodi): Update to 6.0.0-Leia-Alpha-1.
(libdvdcss/kodi): Update to 1.4.1-Leia-Alpha-1.
(kodi): Update to 18.0_alpha-8.ec16dbc.
[version]: Use GIT-VERSION.
[source](file-name): Use GIT-FILE-NAME.
[arguments]: Adjust substitution.
[home-page]: Use HTTPS.
2018-02-25 18:35:25 +01:00
Julien Lepiller 0aa85081d6
gnu: Add java-plexus-sec-dispatcher.
* gnu/packages/java.scm (java-plexus-sec-dispatcher): New variable.
2018-02-25 12:04:20 +01:00
Julien Lepiller 36607d3bfe
gnu: Add java-modello-plugins-xpp3.
gnu/packages/java.scm (java-modello-plugins-xpp3): New variable.
2018-02-25 12:04:18 +01:00
Julien Lepiller e470856017
gnu: Add java-modello-test.
gnu/packages/java.scm (java-modello-test): New variable.
2018-02-25 12:04:15 +01:00
Julien Lepiller a0ce95ba8f
gnu: Add java-modello-plugins-xml.
* gnu/packages/java.scm (java-modello-plugins-xml): New variable.
2018-02-25 12:04:10 +01:00
Julien Lepiller fc620befd4
gnu: Add java-modello-plugins-java.
* gnu/packages/java.scm (java-modello-plugins-java): New variable.
2018-02-25 11:59:34 +01:00
Julien Lepiller b26c8b6184
gnu: Add java-modello-core.
* gnu/packages/java.scm (java-modello-core): New variable.
2018-02-25 11:58:50 +01:00
Julien Lepiller 8f524749bc
gnu: Add java-sisu-build-api.
* gnu/packages/java.scm (java-sisu-build-api): New variable.
2018-02-25 11:58:25 +01:00
Julien Lepiller f8a519fa3f
gnu: Add java-plexus-compiler-javac.
gnu/packages/java.scm (java-plexus-compiler-javac): New variable.
2018-02-25 11:57:26 +01:00
Julien Lepiller 239126d48b
gnu: Add java-plexus-compiler-api.
* gnu/packages/java.scm (java-plexus-compiler-api): New variable.
2018-02-25 11:56:44 +01:00
Julien Lepiller 4f77ba17c6
gnu: Add java-plexus-cipher.
* gnu/packages/java.scm (java-plexus-cipher): New variable.
2018-02-25 11:56:31 +01:00
Julien Lepiller a7ad92ade9
gnu: Make java-plexus-container-default-bootstrap private.
* gnu/packages/java.scm (java-plexus-container-default-bootstrap): Make
private.
2018-02-25 11:55:39 +01:00
Julien Lepiller 3214afabff
gnu: Add java-plexus-component-annotations.
* gnu/packages/java.scm (java-plexus-component-annotations): New
variable.
2018-02-25 11:55:08 +01:00
Julien Lepiller 3422e10ede
gnu: Update java-testng to 6.14.3.
* gnu/packages/java.scm (java-testng): Update to 6.14.3.
2018-02-25 11:54:43 +01:00
Marius Bakke 5697897537
gnu: json-glib: Fix 32-bit test failures.
* gnu/packages/patches/json-glib-fix-tests-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (json-glib)[source](patches): New field.
2018-02-25 04:28:21 +01:00
Ludovic Courtès ad2e142278
gnu: tar: Skip faulty test.
* gnu/packages/base.scm (tar)[arguments]: Add #:make-flags.
2018-02-25 01:03:52 +01:00
Kei Kebreau 0181df537f
gnu: wxmaxima: Update to 18.02.0.
* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0.
[source]: Add patch.
[build-system]: Use the cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[arguments]: Disable tests, remove 'autoconf' phase.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-24 18:05:52 -05:00
Ludovic Courtès cff07bde98
gnu: sqlite: Fix source URL.
* gnu/packages/databases.scm (sqlite)[source]: Change "/2017" to
"/2018".
2018-02-24 23:11:49 +01:00
Marius Bakke e58bf025df
Merge branch 'master' into core-updates 2018-02-24 21:49:30 +01:00
Marius Bakke e8ee100e8e
gnu: libraw: Update to 0.18.8.
* gnu/packages/photo.scm (libraw): Update to 0.18.8.
2018-02-24 21:47:14 +01:00
Efraim Flashner cd5e084342
gnu: imlib2: Update to 1.5.0.
* gnu/packages/image.scm (imlib2): Update to 1.5.0.
2018-02-24 22:00:17 +02:00
Jane Baines 0458ab53f6
gnu: python-django: Update to 1.11.10.
* gnu/packages/django.scm (python-django)[version]: Update to version 1.11.10.
  [arguments]: Patch test helper to add python-pytz to the PYTHONPATH.
  [inputs]: Remove python-pytz.
  [propagated-inputs]: Add python-pytz.

Signed-off-by: Christopher Baines <mail@cbaines.net>
2018-02-24 19:40:27 +00:00
Marius Bakke 5f9b018aa8
Merge branch 'master' into staging 2018-02-24 19:04:13 +01:00
Oleg Pykhalov f09cb93e3a
gnu: Add licensecheck.
* gnu/packages/license.scm (licensecheck): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 5a227e7c5c
gnu: Add perl-moo-2.
* gnu/packages/perl.scm (perl-moo-2): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 615cf73f69
gnu: Add perl-sub-quote.
* gnu/packages/perl.scm (perl-sub-quote): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 4fabb4a293
gnu: Add perl-role-tiny-2.
* gnu/packages/perl.scm (perl-role-tiny-2): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov f3448f3ff8
gnu: Add perl-strictures-2.
* gnu/packages/perl.scm (perl-strictures-2): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 222b50018d
gnu: Add perl-universal-require.
* gnu/packages/perl.scm (perl-universal-require): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 24eab3c093
gnu: Add perl-test-roo.
* gnu/packages/perl-check.scm (perl-test-roo): New public variable.
2018-02-24 20:01:31 +03:00
Oleg Pykhalov 7339dae4ec
gnu: Add perl-multidimensional.
* gnu/packages/perl.scm (perl-multidimensional): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov 1b6f647fc4
gnu: Add perl-lexical-sealrequirehints.
* gnu/packages/perl.scm (perl-lexical-sealrequirehints): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov e13aa12f0f
gnu: Add perl-indirect.
* gnu/packages/perl.scm (perl-indirect): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov b20ac390b3
gnu: Add perl-bareword-filehandles.
* gnu/packages/perl.scm (perl-bareword-filehandles): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov 9b993e3bb9
gnu: Add perl-b-hooks-op-check.
* gnu/packages/perl.scm (perl-b-hooks-op-check): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov 017b014ce4
gnu: Add perl-extutils-depends.
* gnu/packages/perl.scm (perl-extutils-depends): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov 82e5e0dd52
gnu: Add perl-software-license.
* gnu/packages/license.scm (perl-software-license): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov a4e6bf64f7
gnu: Add perl-data-section.
* gnu/packages/perl.scm (perl-data-section): New public variable.
2018-02-24 20:01:30 +03:00
Oleg Pykhalov 12d330b0a4
gnu: Add perl-test-failwarnings.
* gnu/packages/perl-check.scm (perl-test-failwarnings): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov ec38b3954d
gnu: Add perl-string-escape.
* gnu/packages/perl.scm (perl-string-escape): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov f4e2d9ee6c
gnu: Add perl-string-copyright.
* gnu/packages/license.scm (perl-string-copyright): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov 3787b7cba1
gnu: Add perl-number-range.
* gnu/packages/perl.scm (perl-number-range): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov d5ee4342c0
gnu: Add perl-regexp-pattern-license.
* gnu/packages/license.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add this.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov 0f4d93903a
gnu: Add perl-regexp-pattern.
* gnu/packages/perl.scm (perl-regexp-pattern): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov 98418c8107
gnu: Add perl-pod-constants.
* gnu/packages/perl.scm (perl-pod-constants): New public variable.
2018-02-24 20:01:29 +03:00
Oleg Pykhalov f3dc225f7b
gnu: Add perl-path-iterator-rule.
* gnu/packages/perl.scm (perl-path-iterator-rule): New public variable.
2018-02-24 20:01:28 +03:00
Oleg Pykhalov ab1253159f
gnu: Add perl-test-filename.
* gnu/packages/perl-check.scm (perl-test-filename): New public variable.
2018-02-24 20:01:28 +03:00
Clément Lassieur 60628f5452
gnu: password-store: Fix compatibility with GnuPG 2.2.5.
* gnu/packages/patches/password-store-gnupg-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (password-store)[source]: Use it.
2018-02-24 12:57:39 +01:00
Arun Isaac 952a20d2a2
gnu: rhash: Remove `outputs' argument from phases.
* gnu/packages/crypto.scm (rhash): Remove unnecessary `outputs' argument from
custom phases.
2018-02-24 17:02:43 +05:30
Mark H Weaver 8492334dc9
gnu: linux-libre: Update to 4.15.5.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.5.
(%linux-libre-hash): Update hash.
2018-02-23 22:03:12 -05:00
Mark H Weaver cf789b0834
gnu: linux-libre@4.14: Update to 4.14.21.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.21.
(%linux-libre-4.14-hash): Update hash.
2018-02-23 22:02:23 -05:00
Mark H Weaver b51453337b
gnu: linux-libre@4.9: Update to 4.9.83.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.83.
2018-02-23 22:01:46 -05:00
Mark H Weaver 69df64a3d3
gnu: linux-libre@4.4: Update to 4.4.117.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.117.
2018-02-23 22:01:11 -05:00
Marius Bakke 65f704f373
gnu: wavpack: Fix CVE-2018-7253 and CVE-2018-7254.
* gnu/packages/patches/wavpack-CVE-2018-7253.patch,
gnu/packages/patches/wavpack-CVE-2018-7254.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/audio.scm (wavpack)[source](patches): Use them.
2018-02-23 20:40:51 +01:00
Marius Bakke b5bb0e4391
gnu: miniupnpc: Update to 2.0.20180222.
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20180222.
2018-02-23 20:40:51 +01:00
Marius Bakke 6db2accc9c
gnu: tevent: Update to 0.9.36.
* gnu/packages/samba.scm (tevent): Update to 0.9.36.
2018-02-23 20:40:51 +01:00
Leo Famulari 853b029209
gnu: vc: Update to 1.3.3.
* gnu/packages/maths.scm (vc): Update to 1.3.3.
2018-02-23 13:18:32 -05:00
Ricardo Wurmus f3ac068927
gnu: java-tomcat: Update to 8.5.28 [security fixes].
Fixes CVE-2018-1304.

* gnu/packages/web.scm (java-tomcat): Update to 8.5.28.
2018-02-23 18:31:46 +01:00
Ricardo Wurmus e982500fa6
gnu: Add emacs-sly.
* gnu/packages/emacs.scm (emacs-sly): New variable.
2018-02-23 18:31:46 +01:00
Rutger Helling a512246ccd
gnu: vulkan-icd-loader: Update to 1.0.68.0.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Update to 1.0.68.0.
[arguments]: Add 'remove-spirv-tools-commit-id phase. Add "-DBUILD_LAYERS=OFF"
configure-flag.
2018-02-23 18:17:37 +01:00
Tobias Geerinckx-Rice 8572adb28a
gnu: calibre: Spell ‘e-book’ consistently.
* gnu/packages/ebook.scm (calibre)[description]: Use synopsis' ‘e-book’
spelling.
2018-02-23 16:00:07 +01:00
Tobias Geerinckx-Rice ae16afe92e
gnu: calibre: Update to 3.17.0.
* gnu/packages/ebook.scm (calibre): Update to 3.17.0.
[arguments]: End all phases with #t.
2018-02-23 16:00:07 +01:00
Tobias Geerinckx-Rice a59f429ad1
gnu: s6-networking: Update to 2.3.0.2.
* gnu/packages/skarnet.scm (s6-networking): Update to 2.3.0.2.
2018-02-23 16:00:06 +01:00
Tobias Geerinckx-Rice 8ea7d85554
gnu: s6-dns: Update to 2.3.0.0.
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.0.0.
2018-02-23 16:00:06 +01:00
Tobias Geerinckx-Rice c14dcc0c40
gnu: Add s6-linux-init.
This new package contains refugees from the s6-linux-utils update.

* gnu/packages/skarnet.scm (s6-linux-init): New public variable.
2018-02-23 16:00:06 +01:00
Tobias Geerinckx-Rice ef8cab008b
gnu: s6-linux-utils: Update to 2.4.0.2.
* gnu/packages/skarnet.scm (s6-linux-utils): Update to 2.4.0.2.
2018-02-23 16:00:06 +01:00
Tobias Geerinckx-Rice 1f1031f7d9
gnu: s6-rc: Update to 0.4.0.0.
* gnu/packages/skarnet.scm (s6-rc): Update to 0.4.0.0.
2018-02-23 16:00:06 +01:00
Tobias Geerinckx-Rice 77482ccabe
gnu: s6: Update to 2.7.0.0.
* gnu/packages/skarnet.scm (s6): Update to 2.7.0.0.
2018-02-23 16:00:05 +01:00
Tobias Geerinckx-Rice 787781deff
gnu: s6-portable-utils: Update to 2.2.1.1.
* gnu/packages/skarnet.scm (s6-portable-utils): Update to 2.2.1.1.
2018-02-23 16:00:05 +01:00
Tobias Geerinckx-Rice ba1203d030
gnu: execline: Update to 2.3.0.4.
* gnu/packages/skarnet.scm (execline): Update to 2.3.0.4.
2018-02-23 16:00:05 +01:00
Tobias Geerinckx-Rice 35f75dceb9
gnu: skalibs: Update to 2.6.3.1.
* gnu/packages/skarnet.scm (skalibs): Update to 2.6.3.1.
[arguments]: Drop obsolete ‘--enable-force-devr’ from #:configure-flags.
2018-02-23 16:00:05 +01:00
Tobias Geerinckx-Rice d1e8408f53
gnu: skarnet: Use HTTPS for home pages.
* gnu/packages/skarnet.scm (skalibs, execline, s6-linux-utils, s6-dns)
(s6-networking, s6-rc, s6-portable-utils, s6-linux-utils)[home-page]:
Use HTTPS.
2018-02-23 16:00:05 +01:00
Tobias Geerinckx-Rice bbf8832f16
gnu: optipng: Update to 0.7.7 [security fixes].
This release claims to fix 2 vulnerabilities:
- ‘an integer overflow vulnerability in the TIFF decoder’
  (CVE-2017-1000229, previously patched in Guix), and
- ‘a buffer overflow vulnerability in the GIF decoder’.

* gnu/packages/image.scm (optipng): Update to 0.7.7.
[source]: Remove patch.
[arguments]: Substitute INVOKE for SYSTEM* and end phase with #t.
* gnu/packages/patches/optipng-CVE-2017-1000229.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-23 16:00:04 +01:00
Tobias Geerinckx-Rice 5a82c90400
gnu: bpython: Update to 0.17.1.
* gnu/packages/python.scm (bpython): Update to 0.17.1.
2018-02-23 16:00:04 +01:00
Tobias Geerinckx-Rice 78d6524aeb
gnu: musl: Use HTTPS home page.
* gnu/packages/musl.scm (musl)[home-page]: Use HTTPS.
2018-02-23 16:00:04 +01:00
Tobias Geerinckx-Rice 4b971dde8f
gnu: musl: Update to 1.1.19.
* gnu/packages/musl.scm (musl): Update to 1.1.19.
2018-02-23 16:00:04 +01:00
Tobias Geerinckx-Rice 8d4ba9ba1c
gnu: parallel: Update to 20180222.
* gnu/packages/parallel.scm (parallel): Update to 20180222.
2018-02-23 16:00:03 +01:00
Rutger Helling 18cbba2695
gnu: mesa-utils: Update to 8.4.0.
* gnu/packages/gl.scm (mesa-utils): Update to 8.4.0.
2018-02-23 15:36:34 +01:00
Rutger Helling 6bebad7721
gnu: dolphin-emu: Enable Vulkan video backend.
* gnu/packages/emulators.scm (dolphin-emu): Enable Vulkan video backend.
[inputs]: Add vulkan-icd-loader.
[arguments]: Rename 'generate-fonts to
'generate-fonts&hardcore-libvulkan-path. Hardcode libvulkan.so.
2018-02-23 10:17:48 +01:00
Rutger Helling 6ac6055aa2
gnu: you-get: Update to 0.4.1025.
* gnu/packages/video.scm (you-get): Update to 0.4.1025.
2018-02-23 08:50:23 +01:00
Arun Isaac a21eb019bd
gnu: Add rhash.
* gnu/packages/crypto.scm (rhash): New variable.
2018-02-23 12:51:49 +05:30
Efraim Flashner 5c213d1bee
gnu: american-fuzzy-lop: Change custom qemu input.
* gnu/packages/debug.scm (american-fuzzy-lop)[inputs]: Custom-qemu now
inherits from private qemu-minimal-2.10.
* gnu/packages/bootloaders.scm (qemu-minimal-2.10): Add note to move
variable to gnu/packages/debug.scm when no longer needed in
bootloaders.scm.
2018-02-22 22:15:21 +02:00
Leo Famulari cfcc0f3c63
gnu: gnupg: Update to 2.2.5.
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.5.
2018-02-22 14:42:47 -05:00
ng0 b4cb9308f7
gnu: Add cwm.
* gnu/packages/wm.scm (cwm): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-22 14:24:02 -05:00
Efraim Flashner 8528080405
gnu: dolphin-emu: Shorten the source snippet.
* gnu/packages/emulators.scm (dolphin-emu): Rewrite the source snippet
to be more compact.
2018-02-22 21:02:56 +02:00
Efraim Flashner e89bfc2dfd
gnu: dolphin-emu: Enable building on aarch64-linux.
* gnu/packages/emulators.scm (dolphin-emu)[supported-systems]: Add
aarch64-linux.
2018-02-22 21:02:53 +02:00
Oleg Pykhalov fd7da5b9e3
gnu: mlt: Fix compilation against glibc 2.26.
* gnu/packages/video.scm (mlt)[source](snippet, modules): New fields.
2018-02-22 21:43:20 +03:00
Tobias Geerinckx-Rice 58246f9650
gnu: strongswan: Separate phases.
* gnu/packages/networking.scm (strongswan)[arguments]: Split
‘adjust-to-environment’ phase into ‘patch-command-file-names’ and
‘set-up-test-environment’.
2018-02-22 17:24:37 +01:00
Tobias Geerinckx-Rice c85eca6253
gnu: strongswan: Update to 5.6.2.
* gnu/packages/networking.scm (strongswan): Update to 5.6.2.
2018-02-22 17:24:37 +01:00
Tobias Geerinckx-Rice 8e6b131baa
gnu: pumpa: Update to 0.9.3.
* gnu/packages/pumpio.scm (pumpa): Update to 0.9.3.
[arguments]: Substitute INVOKE for SYSTEM*.
2018-02-22 17:24:36 +01:00
Tobias Geerinckx-Rice e39631a9e1
gnu: mit-scheme: Update phase style.
* gnu/packages/scheme.scm (mit-scheme)[arguments]: Use INVOKE and end
phases with #t.
2018-02-22 17:24:36 +01:00
Tobias Geerinckx-Rice 4eb0f5cdd9
gnu: po4a: Update home page.
* gnu/packages/gettext.scm (po4a)[home-page]: Update.
2018-02-22 17:24:36 +01:00
Marius Bakke fb6550058e
gnu: libsndfile: Incorporate grafted changes.
* gnu/packages/pulseaudio.scm (libsndfile)[replacement]: Remove field.
[source](patches): Add "libsndfile-CVE-2017-12562.patch".
(libsndfile/fixed): Remove variable.
2018-02-22 15:41:24 +01:00
Marius Bakke bb2a95580e
gnu: libx264: Change to stable branch.
Fixes <https://bugs.gnu.org/30573>.
Reported by George myglc2 Clemmer <myglc2@gmail.com>

* gnu/packages/video.scm (libx264)[source]: Use 'stable' snapshot.
2018-02-22 15:32:48 +01:00
Marius Bakke 9cf2de87d2
gnu: ccid: Update to 1.4.29.
* gnu/packages/security-token.scm (ccid): Update to 1.4.29.
2018-02-22 14:35:51 +01:00
Björn Höfling a2a532742a
gnu: Add spatialite-gui.
* gnu/packages/geo.scm (spatialite-gui): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-22 14:35:51 +01:00
Björn Höfling 1aef4222b6
Revert "gnu: Remove wxwidgets@2.8."
This reverts commit 6f9ba4c91c.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-22 14:35:51 +01:00
Björn Höfling 22c7c77571
gnu: Add libgaiagraphics.
* gnu/packages/geo.scm (libgaiagraphics): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-22 14:35:50 +01:00
Björn Höfling f6c507e13c
gnu: Add libspatialite.
* gnu/packages/geo.scm (libspatialite): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-02-22 14:35:50 +01:00
Marius Bakke 89bc528731
gnu: libsoup: Update to 2.60.3.
* gnu/packages/gnome.scm (libsoup): Update to 2.60.3.
2018-02-22 14:15:17 +01:00
Marius Bakke fdc38cb6ca
gnu: fio: Update to 3.5.
* gnu/packages/benchmark.scm (fio): Update to 3.5.
2018-02-22 14:15:17 +01:00
Marius Bakke 149cc42239
gnu: xorgproto: Update to 2018.3.
* gnu/packages/xorg.scm (xorgproto): Update to 2018.3.
2018-02-22 14:15:17 +01:00
Marius Bakke 98afa18413
gnu: json-glib: Update to 1.4.2.
* gnu/packages/gnome.scm (json-glib): Update to 1.4.2.
[build-system]: Change to MESON-BUILD-SYSTEM.
[native-inputs]: Add GETTEXT-MINIMAL.
2018-02-22 14:10:18 +01:00
Marius Bakke fe4910f2ab
gnu: libgsf: Update to 1.14.42.
* gnu/packages/gnome.scm (libgsf): Update to 1.14.42.
2018-02-22 14:04:20 +01:00
Rutger Helling 1a6734ed30
gnu: Adjust and remove copyright lines for moved packages.
* gnu/packages/games.scm: Adjust and remove copyright lines for packages that
  got moved to emulators.scm
2018-02-22 13:55:40 +01:00
Rutger Helling 9e1d2fbc32
gnu: Remove copyright line for moved package.
* gnu/packages/games.scm: Remove copyright line for package that got moved to
  emulators.scm
2018-02-22 12:38:56 +01:00
Rutger Helling 9af704c59c
gnu: Move emulation packages from games to emulators.
* gnu/packages/games.scm (desmume) (dosbox) (emulation-station) (higan) (mgba)
  (mupen64plus-audio-sdl) (mupen64plus-core) (mupen64plus-input-sdl)
  (mupen64plus-rsp-hle) (mupen64plus-rsp-z64) (mupen64plus-ui-console)
  (mupen64plus-video-arachnoid) (mupen64plus-video-glide64)
  (mupen64plus-video-glide64mk2) (mupen64plus-video-rice)
  (mupen64plus-video-z64) (nestopia-ue) (retroarch): Move to... *
  gnu/packages/emulators.scm: ... here.
2018-02-22 12:15:23 +01:00
Ricardo Wurmus 65c9d25739
gnu: r-qtl: Update to 1.42-8.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-8.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus 8cc41c8ff5
gnu: r-forcats: Update to 0.3.0.
* gnu/packages/statistics.scm (r-forcats): Update to 0.3.0.
[propagated-inputs]: Add r-rlang.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus e5e56cc9eb
gnu: r-xml: Update to 3.98-1.10.
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.10.
[inputs]: Add zlib.
[native-inputs]: Add pkg-config.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus 0c43f4814b
gnu: r-devtools: Update to 1.13.5.
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.5.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus fae330c354
gnu: r-dbplyr: Update to 1.2.1.
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.2.1.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus 1ea6639868
gnu: r-rlang: Update to 0.2.0.
* gnu/packages/statistics.scm (r-rlang): Update to 0.2.0.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus 5b62630280
gnu: r-knitr: Update to 1.20.
* gnu/packages/statistics.scm (r-knitr): Update to 1.20.
2018-02-22 11:18:03 +01:00
Ricardo Wurmus b4c6f4caf7
gnu: r-stringr: Update to 1.3.0.
* gnu/packages/statistics.scm (r-stringr): Update to 1.3.0.
[propagated-inputs]: Add r-glue.
2018-02-22 11:18:02 +01:00
Ricardo Wurmus 51b7b0e30f
gnu: r-timedate: Update to 3043.102.
* gnu/packages/cran.scm (r-timedate): Update to 3043.102.
2018-02-22 11:18:02 +01:00
Rutger Helling e5f9ec8bc3
gnu: Add dolphin-emu.
* gnu/packages/emulators.scm (dolphin-emu): New variable.
2018-02-22 09:20:51 +01:00
David Thompson 3fd2ecb338
gnu: Add wxwidgets-gtk2-3.1.
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2-3.1): New variable.

Signed-off-by: Rutger Helling <rhelling@mykolab.com>
2018-02-22 09:07:25 +01:00
Leo Famulari 62d14d2400
gnu: mpd-mpc: Update to 0.29.
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.29.
[build-system]: Use the meson-build-system.
2018-02-22 01:40:29 -05:00
Leo Famulari 943100f61d
gnu: mpd: Update to 0.20.17.
* gnu/packages/mpd.scm (mpd): Update to 0.20.17.
[source]: Use HTTPS URL.
2018-02-22 01:40:28 -05:00
Leo Famulari c59ea46fd1
gnu: libmpdclient: Update to 2.14.
* gnu/packages/mpd.scm (libmpdclient): Update to 2.14.
[source]: Use HTTPS URL.
2018-02-22 01:40:24 -05:00
Oleg Pykhalov 659f790b3f
gnu: Add emacs-edit-indirect.
* gnu/packages/emacs.scm (emacs-edit-indirect): New public variable.
2018-02-21 22:29:41 +03:00
Leo Famulari 22261238e7
gnu: mbedtls-apache: Update to 2.7.0 [security fixes].
Fixes CVE-2017-18187 and CVE-2018-{0487,0488}.

* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.0.
2018-02-21 14:28:03 -05:00
Danny Milosavljevic a0343008dc
gnu: libx264: Use nasm.
Follow-up to a33727db1b.

* gnu/packages/video.scm (libx264)[native-inputs]: Replace yasm by nasm.
2018-02-21 20:27:01 +01:00
Efraim Flashner a33727db1b
gnu: libx264: Update to 20180219-2245.
* gnu/packages/video.scm (libx264): Update to 20180219-2245.
2018-02-21 19:29:32 +02:00
Tobias Geerinckx-Rice a89e0cf581
gnu: lpsolve: Update to 5.5.2.5.
* gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
2018-02-21 15:02:49 +01:00
Tobias Geerinckx-Rice 453c002679
gnu: shflags: Update to 1.2.3.
* gnu/packages/version-control.scm (shflags): Update to 1.2.3.
[arguments]: Match new sources layout.
2018-02-21 15:02:49 +01:00
Tobias Geerinckx-Rice dcb06ac9cf
gnu: shflags: Use the GNU-BUILD-SYSTEM.
The TRIVIAL-BUILD-SYSTEM doesn't really save any effort and is actually
slightly longer.

* gnu/packages/version-control.scm (shflags)[build-system: Use
GNU-BUILD-SYSTEM.
[arguments]: Adjust accordingly and prefer INSTALL-FILE over COPY-FILE.
2018-02-21 15:02:49 +01:00
Tobias Geerinckx-Rice 79f0561f43
gnu: htop: Fix tree view.
* gnu/packages/patches/htop-fix-process-tree.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (htop)[source]: Use it.
2018-02-21 15:02:49 +01:00
Tobias Geerinckx-Rice 6c96b5452c
gnu: lpsolve: Update phase style.
* gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and
INSTALL-FILE, and end phases with #t.
2018-02-21 15:02:48 +01:00
Tobias Geerinckx-Rice be5dc5fb18
gnu: iptables: Edit synopsis & description.
* gnu/packages/linux.scm (iptables)[synopsis, description]: Improve.
2018-02-21 15:02:48 +01:00
Tobias Geerinckx-Rice 4f3bf2059e
gnu: iptables: Update to 1.6.2.
* gnu/packages/linux.scm (iptables): Update to 1.6.2.
2018-02-21 15:02:48 +01:00
Tobias Geerinckx-Rice 9a9d64eaf9
gnu: lout: Update phase style.
* gnu/packages/lout.scm (lout)[arguments]: Write phases in-line, use
MODIFY-PHASES syntax, INVOKE, and WITH-DIRECTORY-EXCURSION, and end
phases with #t.  Re-indent the result.
2018-02-21 15:02:48 +01:00
Tobias Geerinckx-Rice ea5d238dae
gnu: cook: Update phase style.
* gnu/packages/cook.scm (cook)[arguments]: Use MODIFY-PHASES syntax and
end phase with #t.
2018-02-21 15:02:47 +01:00
Tobias Geerinckx-Rice 61faf24df6
gnu: slang: Update to 2.3.1a.
* gnu/packages/slang.scm (slang): Update to 2.3.1a.
2018-02-21 15:02:47 +01:00
Tobias Geerinckx-Rice 20e73f5b58
gnu: shflags: Set source file name.
* gnu/packages/version-control.scm (shflags)[source]: Use a meaningful
FILE-NAME.
2018-02-21 15:02:47 +01:00
Tobias Geerinckx-Rice 219ec95c90
gnu: getmail: Update to 5.5.
* gnu/packages/mail.scm (getmail): Update to 5.5.
2018-02-21 15:02:46 +01:00
Danny Milosavljevic 781d721a82
gnu: ldc: Add comment.
* gnu/packages/ldc.scm (ldc): Add comment.
2018-02-21 12:07:13 +01:00
Danny Milosavljevic a4960a204d
gnu: dub: Use invoke.
* gnu/packages/ldc.scm (dub): Use invoke.
2018-02-21 02:52:01 +01:00
Danny Milosavljevic 12479d58be
gnu: rdmd: Use invoke.
* gnu/packages/ldc.scm (rdmd): Use invoke.
2018-02-21 02:51:13 +01:00
Leo Famulari eadcdc7422
gnu: tzdata: Restore the test variant tzdata-for-tests.
Commit 62868f124c (gnu: tzdata: Preserve directory layout from before tzdata
2018a) changed the derivation of this package, which doesn't need to change yet.

* gnu/packages/base.scm (tzdata-for-tests)[arguments]: Copy the build
arguments from before commit 62868f124c.
2018-02-20 14:14:38 -05:00
Marius Bakke 9102ce124c
gnu: bash: Update to patch level 19.
* gnu/packages/bash.scm (%patch-series-4.4): Add patches 13 through 19.
2018-02-20 19:54:25 +01:00
Marius Bakke 3b1b504229
gnu: libsigsegv: Update to 2.12.
* gnu/packages/libsigsegv.scm (libsigsegv): Update to 2.12.
2018-02-20 19:54:25 +01:00
Marius Bakke 130ea9e29b
gnu: less: Update to 530.
* gnu/packages/less.scm (less): Update to 530.
2018-02-20 19:54:25 +01:00
Marius Bakke e48859b2b2
gnu: mpc: Update to 1.1.0.
* gnu/packages/multiprecision.scm (mpc): Update to 1.1.0.
2018-02-20 19:54:25 +01:00
Marius Bakke 784d3b7e8e
gnu: ncurses: Update to 6.1.
* gnu/packages/ncurses.scm (ncurses): Update to 6.1.
[arguments]: Remove APPLY-ROLLUP-PATCH-PHASE.
[native-inputs]: Remove "rollup-patch" origin.  Move comment.
2018-02-20 19:54:24 +01:00
Marius Bakke eaa7b9664e
gnu: gdbm: Update to 1.14.
* gnu/packages/databases.scm (gdbm): Update to 1.14.
2018-02-20 19:54:24 +01:00
Marius Bakke 49b080de9a
gnu: gzip: Update to 1.9.
* gnu/packages/compression.scm (gzip): Update to 1.9.
2018-02-20 19:53:56 +01:00
Tobias Geerinckx-Rice 71a96ecb29
gnu: nspr: Update to 4.18.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.18.
2018-02-20 19:52:46 +01:00
Pjotr Prins 1b541c3e93
gnu: ldc: Update to 1.7.0.
Fixes recent bootstrap and updates ldc and package manager to match.

* gnu/packages/ldc.scm (ldc-bootstrap): Update to 0.17.4.
[properties]: Add max-slient-time.
[arguments]<#:phases>[patch-phobos]: Update patches (see below).
(ldc): Update to 1.7.0.
(ldc-beta): Delete variable.
[arguments]<#:phases>[patch-phobos]: Update patches (see below).
[arguments]<#:phases>[check]: Use invoke.
(rdmd): Update to 2.077.1.
(dub): Update to 1.7.2.
* gnu/local.mk (dist_patch_DATA): Remove "ldc-disable-tests.patch".
Add "ldc-bootstrap-disable-tests.patch".
Remove "ldc-1.1.0-disable-phobos-tests.patch".
Add "ldc-1.7.0-disable-phobos-tests.patch".
Remove "ldc-1.1.0-disable-dmd-tests.patch".

Co-Authored-By: Danny Milosavljevic <dannym@scratchpost.org>
2018-02-20 19:36:34 +01:00
Tobias Geerinckx-Rice 70144879aa
gnu: coreutils: Update to 8.29.
* gnu/packages/base.scm (coreutils): Update to 8.29.
2018-02-20 19:32:45 +01:00
Tobias Geerinckx-Rice 05d86d70d9
gnu: m4: Update phase style.
* gnu/packages/m4.scm (m4)[arguments]: Use MODIFY-PHASES syntax and end
phase with #t.
2018-02-20 19:29:16 +01:00
Tobias Geerinckx-Rice 5170bbd5bc
gnu: ncurses: Update phase style.
* gnu/packages/ncurses.scm (ncurses)[arguments]: Use INVOKE and end
phases with #t.
2018-02-20 19:29:12 +01:00
Tobias Geerinckx-Rice e9190dd4c4
gnu: eudev: Update to 3.2.5.
* gnu/packages/linux.scm (eudev): Update to 3.2.5.
2018-02-20 19:29:08 +01:00
Marius Bakke 5dd53cbf56
gnu: nginx: Update to 1.13.9.
* gnu/packages/web.scm (nginx): Update to 1.13.9.
2018-02-20 19:05:13 +01:00
Marius Bakke d64bcccf43
gnu: grub: Run tests against Qemu 2.10.
* gnu/packages/bootloaders.scm (qemu-minimal-2.10): New variable.
(grub)[native-inputs]: Replace QEMU-MINIMAL with QEMU-MINIMAL-2.10.
2018-02-20 18:23:14 +01:00
Marius Bakke 09183df209
gnu: libical: Update to 3.0.2.
* gnu/packages/calendar.scm (libical)[native-inputs]: Add PKG-CONFIG.
[inputs]: Add GLIB and LIBXML2.  Move ICU4C to ...
[propagated-inputs]: ... here.
[arguments]: Add #:configure-flags to only build shared libs.  Don't access
%build-inputs directly in PATCH-PATHS-PHASE.
[license]: Add MPL2.0.
2018-02-20 17:58:11 +01:00
Marius Bakke 49057c8fc1
Revert "gnu: python2-tqdm: Work around missing flake8 propagation."
This reverts commit 53f826cd0f.
2018-02-20 17:56:06 +01:00
Marius Bakke 7c9a1d5e80
Revert "Revert "gnu: python2-flake8: Fix python-enum34 propagation.""
This reverts commit b7049b2e23.
2018-02-20 17:55:53 +01:00
Marius Bakke 5fa6b52a54
gnu: qemu: Update to 2.11.1.
* gnu/packages/patches/qemu-CVE-2017-15038.patch,
gnu/packages/patches/qemu-CVE-2017-15289.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/virtualization.scm (qemu): Update to 2.11.1
[source](patches): Remove.
2018-02-20 17:44:43 +01:00
Marius Bakke 7f69459aca
Merge branch 'master' into staging 2018-02-20 17:36:56 +01:00
Marius Bakke b1989c1250
gnu: freetype: Fix CVE-2018-6942.
* gnu/packages/patches/freetype-CVE-2018-6942.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/fontutils.scm (freetype)[replacement]: New field.
(freetype/fixed): New variable.
2018-02-20 16:26:20 +01:00
Tobias Geerinckx-Rice 3d2d5ebffa
gnu: gnurl: Add HTTP/2 support.
* gnu/packages/gnunet.scm (gnurl)[inputs]: Add nghttp2:lib.
2018-02-20 16:06:11 +01:00
Tobias Geerinckx-Rice c36615877b
gnu: patchelf: Update phase style.
* gnu/packages/elf.scm (patchelf)[arguments]: Use MODIFY-PHASES syntax
and INVOKE, and end phase with #t.
2018-02-20 16:06:11 +01:00
Tobias Geerinckx-Rice 273cab96d7
gnu: cross-base: Update phase style.
* gnu/packages/cross-base.scm (cross-kernel-headers, cross-libc): Use
MODIFY-PHASES syntax and end phases with #t.
2018-02-20 16:06:10 +01:00
Tobias Geerinckx-Rice fc783fb264
gnu: indent: Update phase style.
* gnu/packages/indent.scm (indent)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
2018-02-20 16:06:10 +01:00
Tobias Geerinckx-Rice e0f71c802c
gnu: intltool: Update phase style.
* gnu/packages/glib.scm (intltool)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
2018-02-20 16:06:10 +01:00
Tobias Geerinckx-Rice edbce464b9
gnu: make-bootstrap: Update phase style.
* gnu/packages/make-bootstrap.scm (%static-inputs): Use MODIFY-PHASES
syntax and end phases with #t.
(%binutils-static, %gcc-static)[arguments]: Likewise.
2018-02-20 16:06:10 +01:00
Tobias Geerinckx-Rice 667e6f1e24
gnu: libffi: Update phase style.
* gnu/packages/libffi.scm (libffi): Move let-bound POST-INSTALL-PHASE to...
[arguments]: ...here, use MODIFY-PHASES syntax, and end phase with #t.
2018-02-20 16:06:10 +01:00
Tobias Geerinckx-Rice d2d1144d61
gnu: dblatex: Update phase style.
* gnu/packages/docbook.scm (dblatex)[arguments]: Use MODIFY-PHASES
syntax and end phase with #t.
2018-02-20 16:06:09 +01:00
Tobias Geerinckx-Rice c04e511693
gnu: glibc-hurd-headers: Update phase style.
* gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use
MODIFY-PHASES syntax and INVOKE, and end phases with #t.
2018-02-20 16:06:09 +01:00
Tobias Geerinckx-Rice 20897536e5
gnu: guile@2.0.14: Update phase style.
* gnu/packages/guile.scm (guile-2.0)[arguments]: Use MODIFY-PHASES
syntax and end phase with #t.
2018-02-20 16:06:09 +01:00
Tobias Geerinckx-Rice 53bfec7bc4
gnu: commencement: Update phase style.
* gnu/packages/commencement.scm (gnu-make-boot0): Substitute INVOKE for
SYSTEM* and end phases with #t.
(glibc-final-with-bootstrap-bash)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
(gcc-boot0)[arguments]: Do all of the above.
2018-02-20 16:06:09 +01:00
Tobias Geerinckx-Rice ba81ca6af3
gnu: gcc@4.7: Update phase style.
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Use MODIFY-PHASES syntax
and end phases with #t.
2018-02-20 16:06:08 +01:00
Tobias Geerinckx-Rice c0ad84ff1e
gnu: gts: Update phase style.
* gnu/packages/graphviz.scm (gts)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
2018-02-20 16:06:08 +01:00
Tobias Geerinckx-Rice 0dc618067b
gnu: util-macros: Update phase style.
* gnu/packages/xorg.scm (util-macros)[arguments]: Use MODIFY-PHASES
syntax and end phases with #t.
2018-02-20 16:06:08 +01:00
Marius Bakke fb9d035015
gnu: python-pyopenssl: Update to 17.5.0.
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 17.5.0.
2018-02-20 16:03:07 +01:00
Marius Bakke 0ba631b90f
gnu: python-cryptography: Update to 2.1.4.
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.1.4.
2018-02-20 16:03:00 +01:00
Marius Bakke cb4a178b20
gnu: libbsd: Update to 0.8.7.
* gnu/packages/libbsd.scm (libbsd): Update to 0.8.7.
2018-02-20 16:01:46 +01:00
Marius Bakke e83f62f947
gnu: sqlite: Update to 3.22.0.
* gnu/packages/databases.scm (sqlite): Update to 3.22.0.
2018-02-20 16:01:46 +01:00
Marius Bakke 797278dff6
gnu: dbus: Update to 1.12.4.
* gnu/packages/glib.scm (dbus): Update to 1.12.4.
2018-02-20 16:01:46 +01:00
Marius Bakke ab1ac4a56b
gnu: glib: Update to 2.54.3.
* gnu/packages/glib.scm (glib): Update to 2.54.3.
2018-02-20 16:01:46 +01:00
Marius Bakke f0539f797a
gnu: util-linux: Update to 2.31.1.
* gnu/packages/linux.scm (util-linux): Update to 2.31.1.
2018-02-20 16:01:45 +01:00
Marius Bakke c8b16de75c
gnu: libuv: Update to 1.19.1.
* gnu/packages/libevent.scm (libuv): Update to 1.19.1.
[arguments]: Use INVOKE instead of SYSTEM*.
2018-02-20 16:01:45 +01:00
Marius Bakke 5c73e162e2
gnu: imagemagick: Update to 6.9.9-35.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-35.
2018-02-20 15:04:28 +01:00
Marius Bakke 1eaba63f73
gnu: calendar.scm: Use license: prefix.
* gnu/packages/calendar.scm (libical, khal, remind, libhdate): Use license: prefix.
2018-02-20 14:58:52 +01:00
Marius Bakke 9d13e77adb
gnu: rrdtool: Use a fixed version of tzdata for tests.
* gnu/packages/rrdtool.scm (rrdtool)[native-inputs]: Replace TZDATA with
TZDATA-FOR-TESTS.
2018-02-20 14:58:52 +01:00
Marius Bakke 4a82722a65
gnu: gtk+: Update to 3.22.28.
* gnu/packages/gtk.scm (gtk+): Update to 3.22.28.
2018-02-20 14:55:58 +01:00
Marius Bakke f55ef78b5c
gnu: gtk+@2: Update to 2.24.32.
* gnu/packages/patches/gtk2-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gtk.scm (gtk+-2): Update to 2.24.32.
[source]: Remove 'gtk2-fix-failing-test.patch'.
2018-02-20 14:55:58 +01:00
Marius Bakke ac85920a74
gnu: bluez: Update to 5.48.
* gnu/packages/linux.scm (bluez): Update to 5.48.
2018-02-20 14:55:58 +01:00
Rutger Helling 2395181a67
gnu: Update copyright line.
* gnu/packages/gl.scm: Update copyright line for commit 7dbd98a.
2018-02-20 09:19:30 +01:00
Rutger Helling 7dbd98a1d5
gnu: mesa: Update to 17.3.5.
* gnu/packages/gl.scm (mesa): Update to 17.3.5.
2018-02-20 09:15:55 +01:00
Leo Famulari 62868f124c
gnu: tzdata: Preserve directory layout from before tzdata 2018a.
tzdata 2018a instroduced some changes to the build and installation
procedures that commit e2832cdc3 failed to address. They are described
in the NEWS file.

This is a followup to commit e2832cdc35.

* gnu/packages/base.scm (tzdata)[arguments]: Set TZDEFAULT. Remove the
time-zone utility programs in a build phase.
2018-02-19 23:57:36 -05:00
Tobias Geerinckx-Rice 775989c7a8
gnu: nix, patchelf: Use HTTPS for nixos.org home pages.
* gnu/packages/elf.scm (patchelf)[home-page]: Use HTTPS.
* gnu/packages/package-management.scm (nix)[home-page]: Likewise.
2018-02-20 05:02:44 +01:00
Leo Famulari 2a5b5bfd84
gnu: libtasn1: Update to 4.13.
* gnu/packages/tls.scm (libtasn1): Update to 4.13.
[source]: Remove patches.
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch,
gnu/packages/patches/libtasn1-CVE-2018-6003.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2018-02-19 21:50:10 -05:00
Arun Isaac baef70bb86
gnu: boost: Update to 1.66.0.
* gnu/packages/boost.scm (boost): Update to 1.66.0.
[arguments]: Replace system* with invoke.
[home-page]: Update URI.
2018-02-19 21:50:10 -05:00
Leo Famulari 6a778c7560
gnu: gnutls: Update to 3.5.18.
* gnu/packages/tls.scm (gnutls): Update to 3.5.18.
2018-02-19 21:50:10 -05:00
Alex Vong ad3c9f18da
gnu: tar: Update to 1.30.
* gnu/packages/base.scm (tar): Update to 1.30.
[source]: Remove 'tar-CVE-2016-6321.patch'.
* gnu/packages/patches/tar-CVE-2016-6321.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-19 21:50:09 -05:00
Leo Famulari 36d37ca9c5
gnu: libgcrypt: Update to 1.8.2.
* gnu/packages/gnupg.scm (libgcrypt): Update to 1.8.2.
2018-02-19 21:50:09 -05:00
Leo Famulari 7b8acffd60
gnu: libatomic-ops: Update to 7.6.2.
* gnu/packages/bdw-gc.scm (libatomic-ops): Update to 7.6.2.
[description]: Fix typo.
2018-02-19 21:50:09 -05:00
Leo Famulari 58f58cb44b
gnu: libgc: Update to 7.6.4.
* gnu/packages/bdw-gc.scm (libgc): Update to 7.6.4.
2018-02-19 21:50:09 -05:00
Tobias Geerinckx-Rice ba3913a5d3
gnu: font-hack: Update to 3.002.
* gnu/packages/fonts.scm (font-hack): Update to 3.002.
2018-02-20 03:31:09 +01:00
Tobias Geerinckx-Rice 3c747a080f
gnu: nss-certs: Update phase style.
* gnu/packages/certs.scm (nss-certs)[arguments]: Use MODIFY-PHASES
syntax, substitute INVOKE for SYSTEM*, and end phas with #t.
2018-02-20 03:27:56 +01:00
Tobias Geerinckx-Rice 13236d30a7
gnu: pango: Update to 1.41.1.
* gnu/packages/gtk.scm (pango): Update to 1.41.1.
[inputs]: Add fribi.
2018-02-20 03:01:41 +01:00
Tobias Geerinckx-Rice c3800f0b6e
gnu: lcms: Update to 2.9.
* gnu/packages/ghostscript.scm (lcms): Update to 2.9.
[source]: Remove patch.
* gnu/packages/patches/lcms-CVE-2016-10165.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-20 03:01:41 +01:00
Tobias Geerinckx-Rice 09371ab4d0
gnu: harfbuzz: Update to 1.7.5.
* gnu/packages/gtk.scm (harfbuzz): Update to 1.7.5.
2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice 9f2eb4ffad
gnu: kmod: Update phase style.
* gnu/packages/linux.scm (kmod)[arguments]: Use MODIFY-PHASES syntax and
end phase in #t.
2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice eb67a470c7
gnu: kmod: Update to 25.
* gnu/packages/linux.scm (kmod): Update to 25.
2018-02-20 03:01:40 +01:00
Tobias Geerinckx-Rice b07e817e21
gnu: fftw: Update phase style.
* gnu/packages/algebra.scm (fftw)[arguments]: Use MODIFY-PHASES syntax
and end phase with #t.
2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice a0d4d2d860
gnu: fftw: Update to 3.3.7.
* gnu/packages/algebra.scm (fftw): Update to 3.3.7.
(fftw-3.3.7): Remove, and...
(fftw-avx): ...update the only caller.
2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 4082f8ed34
gnu: bzip2: Use install-file.
* gnu/packages/compression.scm (bzip2)[arguments]: Use simpler install-file
instead of copy-file.  Remove let binding for (now) single-use basename.
2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 5ecc917d5a
gnu: lzip: Update to 1.20.
* gnu/packages/compression.scm (lzip): Update to 1.20.
2018-02-20 03:01:39 +01:00
Tobias Geerinckx-Rice 280b62b074
gnu: pciutils: Update to 3.5.6.
* gnu/packages/pciutils.scm (pciutils): Update to 3.5.6.
2018-02-20 02:56:36 +01:00
Tobias Geerinckx-Rice 5fff9d9db4
gnu: perl-uri: Update to 1.73.
* gnu/packages/web.scm (perl-uri): Update to 1.73.
[native-inputs]: Add perl-test-needs.
2018-02-20 02:56:36 +01:00
Leo Famulari e2832cdc35
gnu: tzdata: Update to 2018c.
* gnu/packages/base.scm (tzdata): Update to 2018c.
2018-02-19 20:39:06 -05:00
Tobias Geerinckx-Rice 1f577b469a
gnu: chromaprint: Update to 1.4.3.
* gnu/packages/mp3.scm (chromaprint): Update to 1.4.3.
[source]: Update URI.
2018-02-19 23:14:02 +01:00
Tobias Geerinckx-Rice 6080632df8
gnu: socat: Update to 1.7.3.2.
* gnu/packages/networking.scm (socat): Update to 1.7.3.2.
2018-02-19 23:14:02 +01:00
Tobias Geerinckx-Rice 5404f1c29d
gnu: setbfree: Update to 0.8.5.
* gnu/packages/music.scm (setbfree): Update to 0.8.5.
2018-02-19 23:14:01 +01:00
Tobias Geerinckx-Rice 48fbb24c90
gnu: ola: Update to 0.10.6.
* gnu/packages/lighting.scm (ola): Update to 0.10.6.
2018-02-19 23:14:01 +01:00
Tobias Geerinckx-Rice 8af77fe96b
gnu: pciutils: Use HTTPS home page.
* gnu/packages/pciutils.scm (pciutils)[home-page]: Use HTTPS.
2018-02-19 23:14:01 +01:00
ng0 54a402ddd1
gnu: neomutt: Update to 20171215.
* gnu/packages/mail.scm (neomutt): Update to 20171215.
[inputs]: Move "docbook-xsl" to [native-inputs].
[native-inputs]: Remove "autoconf". Add "tcl", "docbook-xml", "w3m".
[argumnets]: Switch to autosetup based build. Add new phases "fix-sasl-test",
"fix-docbook". Remove phase "autoconf".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-19 22:31:09 +01:00
mephi42 b91004c2f5
gnu: Add basic support for s390x-linux-gnu targets.
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
  "s390x-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "s390"
  prefix.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-19 22:22:21 +01:00
Hartmut Goebel 7e4e3df4e8
gnu: qqc2-desktop-style: Fix missing input 'qtquickcontrols2'.
* gnu/packages/kde-frameworks.scm (qqc2-desktop-style)<inputs>:
  Add qtquickcontrols2.
2018-02-19 20:30:53 +01:00
Ricardo Wurmus 21169e3148
gnu: mcomix: Disable tests.
* gnu/packages/image-viewers.scm (mcomix)[arguments]: Disable tests.

Fixes <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30523>.
2018-02-19 18:33:19 +01:00
Ricardo Wurmus ab36fb17e6
gnu: nss-pam-ldapd: Update to 0.9.9.
* gnu/packages/openldap.scm (nss-pam-ldapd): Update to 0.9.9.
2018-02-19 18:16:16 +01:00
Marius Bakke 5f3155ee6c
gnu: ddrescue: Update to 1.23.
* gnu/packages/disk.scm (ddrescue): Update to 1.23.
2018-02-19 17:47:11 +01:00
Marius Bakke 4dc159bb62
gnu: ffmpeg@2.8: Update to 2.8.14.
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.14.
2018-02-19 15:03:44 +01:00
Rutger Helling 4ecfc16839
gnu: xpra: Disable abstract X11 sockets.
* gnu/packages/xorg.scm (xpra): Disable abstract X11 sockets.
2018-02-19 12:56:47 +01:00
Efraim Flashner d81a739a1f
gnu: clisp: Fix building on aarch64-linux.
* gnu/packages/lisp.scm (clisp)[arguments]: Remove 'bindings/glibc' module.
2018-02-19 11:30:48 +02:00
Ricardo Wurmus 79c6af13d0
gnu: r-delayedmatrixstats: Update to 1.0.3.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
2018-02-19 09:53:05 +01:00
Ricardo Wurmus 59b2864d6c
gnu: r-scater: Update to 1.6.3.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
2018-02-19 09:53:05 +01:00
Ricardo Wurmus d578278e35
gnu: r-gviz: Update to 1.22.3.
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
2018-02-19 09:53:05 +01:00
Ricardo Wurmus ca7855fcd2
gnu: r-gprofiler: Update to 0.6.4.
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 8877ab432e
gnu: r-ensembldb: Update to 2.2.2.
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus ebec98ae1d
gnu: r-seurat: Update to 2.2.1.
* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1.
[propagated-inputs]: Remove r-nmf; add r-metap.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 3118b28644
gnu: r-qtl: Update to 1.42-7.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 824c200475
gnu: r-genomicranges: Update to 1.30.2.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus e8484711c6
gnu: r-getopt: Update to 1.20.2.
* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.2.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 1e898bbaea
gnu: r-pryr: Update to 0.1.4.
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.4.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 50ee54eabd
gnu: r-bh: Update to 1.66.0-1.
* gnu/packages/statistics.scm (r-bh): Update to 1.66.0-1.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus ffa7fe3062
gnu: r-nlme: Update to 3.1-131.1.
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-131.1.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 9800f7d9e8
gnu: r-bookdown: Update to 0.7.
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.7.
[propagated-inputs]: Add r-tinytex.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 4376166b03
gnu: Add r-metap.
* gnu/packages/cran.scm (r-metap): New variable.
2018-02-19 09:53:04 +01:00
Ricardo Wurmus 846f4c2303
gnu: Add r-tinytex.
* gnu/packages/cran.scm (r-tinytex): New variable.
2018-02-19 09:53:04 +01:00
Rutger Helling a754c79013
gnu: youtube-dl: Update to 2018.02.11.
* gnu/packages/video.scm (youtube-dl): Update to 2018.02.11.
2018-02-19 09:22:47 +01:00
Rutger Helling 90e37ea088
gnu: retroarch: Update to 1.7.1.
* gnu/packages/games.scm (retroarch): Update to 1.7.1.
2018-02-19 08:12:59 +01:00
Tobias Geerinckx-Rice 77659ff3ad
gnu: iverilog: Use Texinfo in description.
* gnu/packages/fpga.scm (iverilog)[description]: Substitute @command for
inverted commas.
2018-02-19 06:00:33 +01:00
Tobias Geerinckx-Rice c046904d74
gnu: iverilog: Update to 10.2.
* gnu/packages/fpga.scm (iverilog): Update to 10.2.
2018-02-19 06:00:32 +01:00
Tobias Geerinckx-Rice 05ee510272
gnu: nyacc: Update to 0.83.3.
* gnu/packages/mes.scm (nyacc): Update to 0.83.3.
2018-02-19 06:00:32 +01:00
Tobias Geerinckx-Rice e51b3145ca
gnu: nasm: Update to 2.13.03.
* gnu/packages/assembly.scm (nasm): Update to 2.13.03.
2018-02-19 06:00:31 +01:00
Tobias Geerinckx-Rice 0bd8d6dc28
gnu: ccache: Update to 3.4.1.
* gnu/packages/ccache.scm (ccache): Update to 3.4.1.
2018-02-19 06:00:31 +01:00
Tobias Geerinckx-Rice 16cb3b8fe0
gnu: lsof: Run tests.
* gnu/packages/lsof.scm (lsof)[arguments]: Remove untrue #:TESTS?.
Add ‘disable-failing-tests’ and ‘check’ phases to run them.
2018-02-19 06:00:30 +01:00
Tobias Geerinckx-Rice c2799070ca
gnu: lsof: Remove build timestamp.
* gnu/packages/lsof.scm (lsof)[arguments]: Add ‘patch-timestamps’ phase.
2018-02-19 06:00:30 +01:00
Tobias Geerinckx-Rice b7fd3e96c7
gnu: lsof: Update phase style.
* gnu/packages/lsof.scm (lsof)[arguments]: Substitute INVOKE for SYSTEM*
and end phases with #t.
2018-02-19 06:00:29 +01:00
Tobias Geerinckx-Rice 57774ae150
gnu: lsof: Make perl a native input.
* gnu/packages/lsof.scm (lsof)[inputs]: Move perl from here...
[native-inputs]: ...to here.
2018-02-19 06:00:29 +01:00
Tobias Geerinckx-Rice cb443e55dc
gnu: lsof: Factorise source URIs.
* gnu/packages/lsof.scm (%ftp-base): Remove variable.
(lsof)[source]: Construct mirror URI list programatically.
2018-02-19 06:00:28 +01:00
Tobias Geerinckx-Rice 5ae76e8f16
gnu: lsof: Replace dead mirror.
* gnu/packages/lsof.scm (lsof)[source]: Replace sunsite.ualberta.ca with
mirrorservice.org, which offers both HTTP and FTP services.
2018-02-19 06:00:27 +01:00
Tobias Geerinckx-Rice 7268563be5
gnu: dvdstyler: Update to 3.0.4.
* gnu/packages/cdrom.scm (dvdstyler): Update to 3.0.4.
2018-02-19 06:00:27 +01:00
Tobias Geerinckx-Rice 14eb54349a
gnu: perl-xml-sax: Update to 1.00.
* gnu/packages/xml.scm (perl-xml-sax): Update to 1.00.
2018-02-19 06:00:26 +01:00
Tobias Geerinckx-Rice 6208fcf742
gnu: perl-importer: Update to 0.025.
* gnu/packages/perl.scm (perl-importer): Update to 0.025.
2018-02-19 06:00:25 +01:00
Tobias Geerinckx-Rice 780fa70cd3
gnu: perl-params-validationcompiler: Update to 0.27.
* gnu/packages/perl.scm (perl-params-validationcompiler): Update to 0.27.
[native-inputs]: Add perl-type-tiny for another test.
2018-02-19 06:00:25 +01:00
Tobias Geerinckx-Rice 9c22b13136
gnu: xinetd: Don't hard-code tarball version.
* gnu/packages/web.scm (xinetd)[source]: Construct URI using VERSION.
2018-02-19 06:00:24 +01:00
Tobias Geerinckx-Rice 96d47129f6
gnu: ncftp: Update to 3.2.6.
* gnu/packages/ftp.scm (ncftp): Update to 3.2.6.
[source]: Use .xz instead of (discontinued) .bz2 tarball.
2018-02-19 06:00:23 +01:00
Tobias Geerinckx-Rice 9e7f1d103d
gnu: knot: Update to 2.6.5.
* gnu/packages/dns.scm (knot): Update to 2.6.5.
2018-02-19 05:57:19 +01:00
Tobias Geerinckx-Rice 331ebb7f94
gnu: awscli: Update to 1.14.41.
* gnu/packages/python-web.scm (awscli): Update to 1.14.41.
2018-02-19 05:57:19 +01:00
Tobias Geerinckx-Rice 659fef8ddb
gnu: libfilezilla: Update to 0.12.0.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.12.0.
2018-02-19 05:57:18 +01:00
Tobias Geerinckx-Rice eae7ece1af
gnu: erlang: Use HTTPS home page.
* gnu/packages/erlang.scm (erlang)[home-page]: Use HTTPS with the new
canonical domain.
2018-02-19 05:57:17 +01:00
okapi 2922852e86
gnu: Add gzdoom.
* gnu/packages/games.scm (gzdoom): New variable.
* gnu/packages/patches/gzdoom-search-in-installed-share.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-19 00:33:34 +01:00
okapi 9073c8758c
gnu: Add fluid-3.
* gnu/packages/audio.scm (fluid-3): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-02-19 00:33:34 +01:00
Ludovic Courtès 5912791655
gnu: guix: Update snapshot to bdf0c64.
* gnu/packages/package-management.scm (guix): Update to bdf0c64.
[arguments] <copy-bootstrap-guile>: Move after 'check' phase.  Rewrite
to use "guix download" and to intern only one or two tarballs.
[inputs]: Remove "boot-guile/*".  Add "boot-guile" and, optionally,
"boot-guile/i686".
2018-02-19 00:33:34 +01:00
Marius Bakke 418cbf6e22
gnu: qt.scm: Remove unneeded import.
* gnu/packages/qt.scm (define-module): Don't import (gnu packages base).
2018-02-18 20:44:19 +01:00
Marius Bakke 5ce3f93bc5
gnu: Add xorgproto.
* gnu/packages/xorg.scm (xorgproto): New public variable.
2018-02-18 20:23:45 +01:00
Marius Bakke 1ac1872161
gnu: lvm2: Remove obsolete phase.
* gnu/packages/linux.scm (lvm2)[arguments]: Remove MAKE-OBJECTS-WRITABLE-PHASE.
2018-02-18 20:13:42 +01:00
Marius Bakke c06bf6a3e2
gnu: argon2: Update to 20171227.
* gnu/packages/password-utils.scm (argon2): Update to 20171227.
[arguments]: Add OPTTEST=1 to #:make-flags to prevent "-march=native".  Remove
custom install phase.  Add 'patch-Makefile' phase.
[license]: Add ASL2.0.
2018-02-18 20:13:42 +01:00
Hartmut Goebel 102fc5bc29
gnu: Add qqc2-desktop-style.
* gnu/packages/kde-frameworks.scm (qqc2-desktop-style): New
  variable.
2018-02-18 19:21:41 +01:00
Hartmut Goebel ac5f3988c4
gnu: knotifications: Add optional input "qtspeech".
* gnu/pacakges/kde-frameworks.scm (knotifications)[inputs]: Add
  qtspeech.
2018-02-18 19:21:40 +01:00
Hartmut Goebel 96e622f15d
gnu: ktextwidgets: Add optional input "qtspeech".
* gnu/pacakges/kde-frameworks.scm (ktextwidgets)[inputs]: Add
  qtspeech.
2018-02-18 19:21:40 +01:00
Hartmut Goebel bb8d1b2a72
gnu: qca: Use mirror://kde scheme for source-url.
* gnu/packages/kde.scm (qca)[source]: Use mirror://kde scheme.
2018-02-18 19:21:39 +01:00
Hartmut Goebel 343bffbd79
gnu: snorenotify: Use mirror://kde scheme for source-url.
* gnu/packages/kde.scm (snorenotify)[source]: Use mirror://kde scheme.
2018-02-18 19:21:38 +01:00
Hartmut Goebel 352e14d87c
gnu: libkomparediff2: Use mirror://kde scheme for source-url.
* gnu/packages/kde.scm (libkomparediff2)[source]: Use mirror://kde
  scheme.
2018-02-18 19:21:38 +01:00
Hartmut Goebel 3600001693
gnu: libkomparediff2: Update to 17.12.1
* gnu/packages/kde.scm(libkomparediff2): Update to 17.12.1.
  [source] Switch to KDE mirror, use mirror://kde scheme.
2018-02-18 19:21:37 +01:00