Commit Graph

29693 Commits (084e14cc37d893703b526d8f8f9220f7ee3aa0b3)

Author SHA1 Message Date
Ricardo Wurmus 084e14cc37
gnu: Add python-pybrowserid.
* gnu/packages/python-web.scm (python-pybrowserid): New variable.
2018-09-24 16:20:42 +02:00
Ricardo Wurmus 0750f344ec
gnu: Add python-hawkauthlib.
* gnu/packages/python-web.scm (python-hawkauthlib): New variable.
2018-09-24 16:20:32 +02:00
Ricardo Wurmus d08b325843
gnu: Add python-grequests.
* gnu/packages/python-web.scm (python-grequests): New variable.
2018-09-24 16:20:19 +02:00
Arun Isaac 53c64d7c93
gnu: m17n-lib: Update to 1.8.0.
* gnu/packages/emacs.scm (m17n-lib): Update to 1.8.0.
2018-09-24 17:46:47 +05:30
Arun Isaac 94282358fd
gnu: m17n-db: Update to 1.8.0.
* gnu/packages/emacs.scm (m17n-db): Update to 1.8.0.
2018-09-24 17:46:18 +05:30
Ricardo Wurmus e72702475d
gnu: Add r-bseqsc.
* gnu/packages/bioinformatics.scm (r-bseqsc): New variable.
2018-09-24 13:31:20 +02:00
Ricardo Wurmus 28829c040f
gnu: Add r-cssam.
* gnu/packages/bioinformatics.scm (r-cssam): New variable.
2018-09-24 13:31:20 +02:00
Ricardo Wurmus a434730f2e
gnu: Add r-xbioc.
* gnu/packages/bioinformatics.scm (r-xbioc): New variable.
2018-09-24 13:31:20 +02:00
Pierre Neidhardt 5c8031ff73
gnu: Prefix all Emacs packages with "emacs-".
* gnu/packages/emacs.scm: Prefix all Emacs packages with "emacs-".
This is to enforce consistency and so that `emacs-packages?' can reliably
detect Emacs packages based on the "emacs-" prefix.
2018-09-24 12:56:04 +02:00
Tobias Geerinckx-Rice cd8aa06093
gnu: python-networkx: Use HTTPS home page.
* gnu/packages/python.scm (python-networkx)[home-page]: Use HTTPS.
2018-09-24 00:34:03 +02:00
Tobias Geerinckx-Rice dd29bd4ebc
gnu: python-networkx: Update to 2.2.
* gnu/packages/python.scm (python-networkx): Update to 2.2.
2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 68cbec027e
gnu: python-decorator: Update to 4.3.0.
* gnu/packages/python.scm (python-decorator): Update to 4.3.0.
[arguments]: Run the test suite.
2018-09-24 00:34:02 +02:00
Tobias Geerinckx-Rice 3715e79ec8
gnu: python-marshmallow: Update to 3.0.0b14.
* gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b14.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice a42b68480b
gnu: libiptcdata: Update to 1.0.5.
* gnu/packages/image.scm (libiptcdata): Update to 1.0.5.
[home-page]: Follow Debian's maintained upstream.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice c30fd002c8
gnu: virtualgl: Update to 2.6.
* gnu/packages/gl.scm (virtualgl): Update to 2.6.
[inputs]: Add libxtst.
2018-09-24 00:34:01 +02:00
Tobias Geerinckx-Rice 2c36baa56f
gnu: parallel: Update to 20180922.
* gnu/packages/parallel.scm (parallel): Update to 20180922.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 2f7ad2a788
gnu: workrave: Use Guix's built-in bootstrap phase.
* gnu/packages/gnome.scm (workrave)[arguments]: Remove
'autoconf' phase.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 899e1974a6
gnu: python-gitdb: Update to 2.0.4.
* gnu/packages/version-control.scm (python-gitdb): Update to 2.0.4.
[arguments]: Replace AND with equivalent but more 'accurate' BEGIN.
2018-09-24 00:34:00 +02:00
Tobias Geerinckx-Rice 0604d3cfce
gnu: nano: Update to 3.1.
* gnu/packages/nano.scm (nano): Update to 3.1.
2018-09-24 00:33:59 +02:00
Tobias Geerinckx-Rice 25706b8fc9
gnu: fping: Use HTTPS home page.
* gnu/packages/networking.scm (fping)[home-page]: Use HTTPS.
2018-09-24 00:33:59 +02:00
Tobias Geerinckx-Rice 8fa361ce63
gnu: fping: Update to 4.1.
* gnu/packages/networking.scm (fping): Update to 4.1.
2018-09-24 00:33:59 +02:00
Ludovic Courtès fce2254711
vm: Use "cache=loose" for all 9p mounts.
This significantly improves read throughput when running things like
"guix hash -r ...".

* gnu/system/vm.scm (%linux-vm-file-systems): Add 'flags' for "store".
Add "cache=loose" to every file system.
2018-09-23 23:34:17 +02:00
Ludovic Courtès b5460d95e9
vm: Disable deduplication for 'guix system vm-image'.
* gnu/system/vm.scm (qemu-image): Pass #:deduplicate? #f to
'root-partition-initializer'.
2018-09-23 23:34:17 +02:00
Ludovic Courtès 88600acc93
system: Mention '--skip-checks' in initrd diagnostics.
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Add note
about '--skip-checks'.
2018-09-23 23:34:16 +02:00
Pierre Neidhardt e10bf49668
gnu: Add emacs-synosaurus.
* gnu/packages/emacs.scm (emacs-synosaurus): New variable.
2018-09-23 17:19:56 +02:00
Rutger Helling 94676ded5f
gnu: xpra: Update to 2.3.4.
* gnu/packages/xorg.scm (xpra): Update to 2.3.4.
2018-09-23 13:15:38 +02:00
Mark H Weaver 84b334362e
gnu: eolie: Use webkitgtk-2.22.
* gnu/packages/gnome.scm (eolie)[native-inputs]: Add gcc-7:lib.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
[arguments]: Add "gcc:lib" to the list of libraries to add to
LD_LIBRARY_PATH.  Use invoke.
2018-09-23 04:55:54 -04:00
Mark H Weaver 480d39a600
gnu: epiphany: Use webkitgtk-2.22.
* gnu/packages/gnome.scm (epiphany)[native-inputs]: Add gcc-7.
[inputs]: Replace webkitgtk with webkitgtk-2.22.
2018-09-23 01:25:21 -04:00
Mark H Weaver 844cc6f876
gnu: webkitgtk: Add version 2.22.2.
* gnu/packages/webkit.scm (webkitgtk-2.22): New variable.
2018-09-23 01:25:09 -04:00
Katherine Cox-Buday 21280a8cd8
gnu: Add Go 1.11.
* gnu/packages/golang.scm (go-1.11): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-22 14:30:13 -04:00
Mark H Weaver ae71cd8ac9
gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].
Includes fixes for CVE-2018-12383 and CVE-2018-12385.

* gnu/packages/patches/icecat-CVE-2018-12383.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply
cleanly to IceCat 60.
* gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from
mozilla-esr60.
(icecat): Add selected changesets from upstream mozilla-esr60.
2018-09-22 13:48:32 -04:00
Danny Milosavljevic 91294b5361
Revert 'gnu: rust: Remove unused "ar" setting.'.
Some versions of Rust do need it and others complain about it.
For now, revert the removal entirely.

This reverts commit ec944a1de9.
2018-09-22 10:09:47 +02:00
Ben Woodcroft 05fb1e0017
gnu: hmmer: Update to 3.2.1.
* gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1.
[origin]: Remove patch.
[license]: Change to BSD-3.
[supported-systems]: New field.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2018-09-22 09:16:47 +10:00
Nicolas Goaziou 78b7b9dbe9
gnu: snap: Update to 4.2.1.4.
* gnu/packages/education.scm (snap): Update to 4.2.1.4.
2018-09-21 22:22:09 +02:00
Nicolas Goaziou a255142af3
gnu: emacs-org: Update to 9.1.14.
* gnu/packages/emacs.scm (emacs-org): Update to 9.1.14.
2018-09-21 21:55:28 +02:00
Tobias Geerinckx-Rice 1302837f6b
gnu: workrave: Update to 1.10.21.
* gnu/packages/gnome.scm (workrave): Update to 1.10.21.
[source]: Use GIT-FILE-NAME.
2018-09-21 20:32:27 +02:00
Tobias Geerinckx-Rice 43726c522f
gnu: emacs-password-store: Update to 1.7.3.
* gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3.
2018-09-21 20:32:27 +02:00
Tobias Geerinckx-Rice 10fadd1e3d
gnu: filezilla: Update to 3.37.1.
* gnu/packages/ftp.scm (filezilla): Update to 3.37.1.
2018-09-21 19:52:27 +02:00
Tobias Geerinckx-Rice 9a32bdf8a9
gnu: wxwidgets: Update to 3.0.4.
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4.
2018-09-21 19:52:26 +02:00
Tobias Geerinckx-Rice 199d72e327
gnu: python-pyparsing: Update to 2.2.1.
* gnu/packages/python.scm (python-pyparsing): Update to 2.2.1.
[source]: Use PYPI-URI.
2018-09-21 19:52:26 +02:00
Danny Milosavljevic ec944a1de9
gnu: rust: Remove unused "ar" setting.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "ar" setting.
2018-09-21 17:59:09 +02:00
pimi 7e27393f82
gnu: Add r-pore.
* gnu/packages/bioinformatics.scm (r-pore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
Paul Garlick 45201bf245
gnu: hdf5-parallel-openmpi: Really enable parallel build.
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set
in the file H5pubconf.h.

* gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add
the "--enable-parallel" flag to the list of configure flags.  Remove
the incompatible "--enable-cxx" flag.  Add 'mpi-setup' phase.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21 17:04:37 +02:00
Paul Garlick b0d1e60fff
gnu: hdf5: Allow for absence of utility script.
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split'
phase to check for existence of h5fc script.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-21 17:04:37 +02:00
Danny Milosavljevic 10e066f410
gnu: rust: Remove unused "localstatedir" setting.
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove
unused "localstatedir" setting.
2018-09-21 15:21:24 +02:00
Tobias Geerinckx-Rice 118a084531
gnu: libfilezilla: Update to 0.13.2.
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2.
[source]: Use HTTPS.
2018-09-21 15:04:29 +02:00
Tobias Geerinckx-Rice 41e551b2d3
gnu: python-pyparsing: Update home page.
* gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice eacb5dc487
gnu: emacs-mu4e-conversation: Fix typo in description.
* gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]:
Fix 'correspondant' typo.
2018-09-21 15:03:49 +02:00
Tobias Geerinckx-Rice 93ab9a5d76
gnu: kodi: Use INVOKE.
* gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00
Tobias Geerinckx-Rice 2aa137e261
gnu: crossguid: Use INVOKE.
* gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
2018-09-21 15:03:48 +02:00