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Author SHA1 Message Date
Marius Bakke 2f92678c70
gnu: re2: Update to 2019-06-01. 
* gnu/packages/regex.scm (re2): Update to 2019-06-01.
 2019-06-03 22:28:48 +02:00
Marius Bakke 106deba71e
gnu: xorg-server: Update to 1.20.5. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.5.
(xorg-server-for-tests): Stay on 1.20.4.
 2019-06-03 22:28:48 +02:00
Marius Bakke 618c7d6682
gnu: python-cryptography: Update to 2.7. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.7.
 2019-06-03 22:28:48 +02:00
Marius Bakke 0abafc468c
gnu: GnuPG: Update to 2.2.16. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.16.
 2019-06-03 22:28:48 +02:00
Marius Bakke 3c75c66cf3
gnu: libsodium: Update to 1.0.18. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.18.
 2019-06-03 22:28:48 +02:00
Marius Bakke d3e3a6adcd
gnu: Remove libevent@2.0. 
* gnu/packages/patches/libevent-2.0-CVE-2016-10195.patch,
gnu/packages/patches/libevent-2.0-CVE-2016-10196.patch,
gnu/packages/patches/libevent-2.0-CVE-2016-10197.patch,
gnu/packages/patches/libevent-2.0-evbuffer-add-use-last-with-datap.patch,
gnu/packages/patches/libevent-dns-tests.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libevent.scm (libevevent-2.0): Remove variable.
 2019-06-03 22:28:48 +02:00
Marius Bakke 1f889a5902
gnu: libevent: Update home page. 
* gnu/packages/libevent.scm (libevent)[home-page]: Use HTTPS.
 2019-06-03 22:28:48 +02:00
Ludovic Courtès 3092f1b835
gnu: guix: Update to 4a54ed7. 
* gnu/packages/package-management.scm (guix): Update to 4a54ed7.
 2019-06-02 23:30:40 +02:00
Leo Famulari 78d1497dcc
gnu: WireGuard: Update to 0.0.20190601. 
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190601.
 2019-06-02 16:33:39 -04:00
Mathieu Lirzin 4a54ed7749
gnu: emacs-google-translate: Update to 0.11.17. 
* gnu/packages/emacs-xyz.scm (emacs-google-translate): Update to 0.11.17.
[source]: Use 'git-fetch' method instead of 'url-fetch'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-02 22:19:19 +02:00
Ludovic Courtès dec4b3aa18
gnu: Add guile-srfi-159. 
* gnu/packages/guile-xyz.scm (guile-srfi-159): New variable.
 2019-06-02 22:01:57 +02:00
Jan Nieuwenhuizen bdf2dd797e
gnu: Add guile-gi. 
* gnu/packages/guile-xyz.scm (guile-gi): New variable.
 2019-06-02 20:18:13 +02:00
Rutger Helling 08f48b7864
gnu: faudio: Update to 19.06. 
* gnu/packages/audio.scm (faudio): Update to 19.06.
 2019-06-02 11:37:26 +02:00
Vagrant Cascadian 54d1430246
gnu: debootstrap: Update to 114. 
* gnu/packages/debian (debootstrap): Update to 114.
 2019-06-01 18:35:36 -07:00
Vagrant Cascadian 76513c949b
gnu: debian-archive-keyring: Update to 2019.01. 
* gnu/packages/debian (debian-archive-keyring): Update to 2019.01.
 2019-06-01 17:38:48 -07:00
Nicolas Goaziou fd4d3939c4
gnu: giac: Update to 1.5.0-57. 
* gnu/packages/algebra.scm (giac): Update to 1.5.0-57.
 2019-06-02 02:21:15 +02:00
Nicolas Goaziou 1a2fa342f0
gnu: musescore: Update to 3.1. 
* gnu/packages/music.scm (musescore): Update to 3.1.
 2019-06-02 02:02:41 +02:00
Andy Tai 08be02bea1
gnu: Add terminator. 
* gnu/packages/gnome.scm (terminator): Add at 1.91

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-02 01:38:36 +02:00
Robert Vollmert 3eb261e2e5
gnu: ghc-happy: Skip memory-hungry tests. 
Tests fail reliably for me on a system with 2GB of available RAM, in
`issue93.a.hs` and `issue93.n.hs`.

* gnu/packages/haskell.scm (ghc-happy): Skip test "issue93".

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-02 01:38:36 +02:00
Nicolas Goaziou 8b3560501f
gnu: keepassxc: Update to 2.4.2. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.2.
 2019-06-02 01:31:52 +02:00
Nicolas Goaziou 36f5e67ab4
gnu: grammalecte: Update to 1.1.1. 
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.1.1.
 2019-06-02 01:23:40 +02:00
Ricardo Wurmus 7d6efd2b6c
gnu: r-openssl: Update to 1.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.
 2019-06-01 23:04:26 +02:00
Ricardo Wurmus f53b4a6b77
gnu: r-biocviews: Update to 1.52.2. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.2.
[propagated-inputs]: Add r-biocmanager.
 2019-06-01 23:04:26 +02:00
Timothy Sample 2ccc9d692a
gnu: Add gash. 
* gnu/packages/shells.scm (gash): New variable.
 2019-06-01 14:47:56 -04:00
Guillaume LE VAILLANT a0c3a2e3a1
gnu: Add txr. 
* gnu/packages/lisp.scm (txr): New variable.
* gnu/packages/patches/txr-shell.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-01 15:26:30 +02:00
Mark H Weaver b6cf7e54ea
gnu: linux-libre: Update to 5.1.6. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.6.
(%linux-libre-hash): Update hash.
 2019-06-01 01:43:11 -04:00
Mark H Weaver bc5d9ae7c9
gnu: linux-libre@4.19: Update to 4.19.47. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.47.
(%linux-libre-4.19-hash): Update hash.
 2019-06-01 01:40:52 -04:00
Mark H Weaver 83c0672877
gnu: linux-libre@4.14: Update to 4.14.123. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.123.
(%linux-libre-4.14-hash): Update hash.
 2019-06-01 01:39:06 -04:00
Mark H Weaver 9d96994c62
gnu: linux-libre@4.9: Update to 4.9.180. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.180.
 2019-06-01 01:37:28 -04:00
Vasile Dumitrascu 86d73d59c9
gnu: gnucash-docs: Update to 3.5. 
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.5.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-05-31 23:06:10 -04:00
Vasile Dumitrascu d4cb92e707
gnu: gnucash: Update to 3.5. 
* gnu/packages/gnucash.scm (gnucash): Update to 3.5.
[source]: Remove unneeded patch.
* gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
 2019-05-31 23:06:10 -04:00
Eric Bavier 4d44bcad56
gnu: dealii-openmpi: Add hdf5-parallel-openmpi input. 
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
 2019-05-31 19:41:41 -05:00
Eric Bavier a13e0f3db4
gnu: slepc: Update to 3.11.1. 
* gnu/packages/maths.scm (slepc): Update to 3.11.1.
[native-inputs]: Add petsc:examples.
[arguments]: Add PETSCCONFIGDIR to #:make-flags.
 2019-05-31 19:41:41 -05:00
Eric Bavier 4f7a4a06c2
gnu: petsc: Update to 3.11.2. 
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
 2019-05-31 19:41:41 -05:00
Eric Bavier e586c6faf3
gnu: petsc-complex-mpi: Setup MPI for tests. 
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup
phase.
 2019-05-31 19:41:41 -05:00
Kei Kebreau 5c48519204
gnu: Add mousepad. 
* gnu/packages/xfce.scm (mousepad): New variable.
 2019-05-31 18:54:20 -04:00
Guillaume LE VAILLANT 7293e3dba1
gnu: Add zbar. 
* gnu/packages/aidc.scm (zbar): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 23:21:02 +02:00
Christopher Baines 4764c6cc46
gnu: Add patchwork. 
* gnu/packages/patchutils.scm (patchwork): New variable.
 2019-05-31 20:22:23 +01:00
Leo Famulari 9bc1de3134
gnu: Go 1.4: Fix typo. 
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
 2019-05-31 10:30:21 -04:00
Julien Lepiller db6dd04c3d
gnu: gtksourceview-2: Fix finding default data. 
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
 2019-05-31 14:41:38 +02:00
Julien Lepiller 27489e7f73
gnu: php: Update to 7.3.6. 
* gnu/packages/php.scm (php): Update to 7.3.6.
 2019-05-31 14:41:32 +02:00
Ricardo Wurmus 1a24f855c8
gnu: Add r-birta. 
* gnu/packages/bioconductor.scm (r-birta): New variable.
 2019-05-31 14:40:29 +02:00
Ricardo Wurmus 81e3de01ae
gnu: Add r-birewire. 
* gnu/packages/bioconductor.scm (r-birewire): New variable.
 2019-05-31 14:40:20 +02:00
Ricardo Wurmus 95bf71c307
gnu: r-seriation: Update to 1.2-5. 
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
 2019-05-31 14:29:32 +02:00
Brian Leung 2e62ba46e2
gnu: emacs-diff-hl: Update to 1.8.6. 
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6.
[source]: Fetch from git.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:21:06 +02:00
Brian Leung 66712cc0ed
gnu: emacs-helm: Update to 3.2. 
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:20:20 +02:00
Brian Leung f42399b5e5
gnu: emacs-counsel-tramp: Update to 0.6.3. 
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:19:53 +02:00
Brian Leung ea82e3b266
gnu: emacs-editorconfig: Update to 0.8.0. 
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:19:18 +02:00
Brian Leung 265ee14650
gnu: emacs-exec-path-from-shell: Update to 1.12. 
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12.
[source]: Use git-fetch.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:18:29 +02:00
LaFreniere, Joseph 8ae48674ce
gnu: Add emacs-reformatter. 
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 10:15:52 +02:00
Joseph LaFreniere b0eaead510
gnu: Add emacs-ivy-pass. 
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-31 09:56:17 +02:00
Rutger Helling e637744547
gnu: kitty: Update to 0.14.1. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
 2019-05-31 08:33:19 +02:00
Vagrant Cascadian ff793da669
gnu: diffoscope: Update to version 115-1.7f3416f. 
* gnu/packages/package-management (diffoscope):
  [package] Update to version 115-1.7f3416f.
  [source] Switch to using git-fetch.
  [inputs] Move python-pytest and python-chardet ...
  [native-inputs] ... to here.
  [arguments] Move comment to fit line length.
 2019-05-30 16:04:30 -07:00
Marius Bakke f87a7cc60e
gnu: libev: Update to 4.25. 
* gnu/packages/libevent.scm (libev): Update to 4.25.
 2019-05-30 14:07:56 +02:00
Ricardo Wurmus add5ecfd68
gnu: r-biocviews: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
 2019-05-30 13:41:10 +02:00
Ricardo Wurmus 782a7f4655
gnu: r-tibble: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
 2019-05-30 13:41:04 +02:00
Ricardo Wurmus d1ee1540d4
gnu: r-dose: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
 2019-05-30 13:40:48 +02:00
Andy Tai 169d63f533
gnu: Add gthumb. 
* gnu/packages/gnome.scm (gthumb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-30 11:50:05 +02:00
Reza Alizadeh Majd dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm. 
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-29 23:16:49 +02:00
Ricardo Wurmus 4c8603e808
gnu: r-statmod: Update to 1.4.32. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
 2019-05-29 22:38:05 +02:00
Ricardo Wurmus 765d327c85
gnu: r-fields: Update to 9.8-3. 
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
 2019-05-29 22:38:05 +02:00
Ricardo Wurmus a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
 2019-05-29 22:38:05 +02:00
Carl Dong a15cee50ce
gnu: Use make-linux-libre-headers. 
* gnu/packages/linux.scm (make-linux-libre-headers): New variable.
(linux-libre): Rename to...
(linux-libre-5.1): ...this.
(linux-libre-headers): Rename to...
(linux-libre-headers-4.14.67): ...this.
(linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers.
(linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19,
%linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15,
linux-libre-headers-4.15, linux-libre-headers-4.14): New variables.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-29 18:19:16 +02:00
Carl Dong 2ea77d48a7
gnu: cross-base: Allow non-default linux-headers. 
* gnu/packages/cross-base.scm (cross-kernel-headers): Add
LINUX-HEADERS optional argument.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-29 15:44:54 +02:00
Carl Dong 7180dd6716
gnu: Add basic support for riscv64-linux-gnu targets. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"riscv64-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "riscv"
prefix.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-29 15:40:31 +02:00
Nicolas Goaziou 4f963be052
gnu: Add childsplay. 
* gnu/packages/education.scm (childsplay): New variable.
 2019-05-29 13:09:53 +02:00
Ricardo Wurmus 4b92dac20f
gnu: awscli: Add missing input. 
Fixes <https://bugs.gnu.org/35980>.

* gnu/packages/python-web.scm (awscli)[arguments]: Add build phase
"fix-reference-to-groff".
[inputs]: Add groff.
 2019-05-29 10:56:28 +02:00
Ricardo Wurmus d37ba98409
gnu: r-scran: Update to 1.12.1. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
 2019-05-29 00:02:42 +02:00
Ricardo Wurmus 55cd48508e
gnu: r-scater: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
 2019-05-29 00:02:37 +02:00
Ricardo Wurmus 102cf9a1ca
gnu: r-sva: Update to 3.32.1. 
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
 2019-05-29 00:02:31 +02:00
Ricardo Wurmus 24f46e6e9e
gnu: r-genomicfeatures: Update to 1.36.1. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
 2019-05-29 00:02:25 +02:00
Ricardo Wurmus 4eea449aaa
gnu: r-edger: Update to 3.26.4. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
 2019-05-29 00:02:17 +02:00
Ricardo Wurmus 4929a30f69
gnu: r-variantannotation: Update to 1.30.1. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
 2019-05-29 00:02:10 +02:00
Ricardo Wurmus e4519ee73d
gnu: r-atacseqqc: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
 2019-05-28 23:56:36 +02:00
Ricardo Wurmus 13b49976b7
gnu: r-icobra: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
 2019-05-28 23:56:31 +02:00
Ricardo Wurmus 85d0bd5340
gnu: r-chippeakanno: Update to 3.18.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
 2019-05-28 23:56:27 +02:00
Ricardo Wurmus f43ec9e96a
gnu: r-geosphere: Update to 1.5-10. 
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
 2019-05-28 23:56:15 +02:00
Ricardo Wurmus 0fe52daa59
gnu: r-ggfortify: Update to 0.4.7. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
 2019-05-28 23:56:08 +02:00
Ricardo Wurmus 7a8577717f
gnu: r-wgcna: Update to 1.68. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
 2019-05-28 23:56:04 +02:00
Ricardo Wurmus 650e8defa0
gnu: r-bookdown: Update to 0.11. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.11.
[propagated-inputs]: Add ghc-pandoc; remove r-yaml.
 2019-05-28 23:55:44 +02:00
Ricardo Wurmus 20656a0202
gnu: r-upsetr: Update to 1.4.0. 
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
 2019-05-28 23:55:38 +02:00
Ricardo Wurmus 41059f63df
gnu: r-epi: Update to 2.37. 
* gnu/packages/cran.scm (r-epi): Update to 2.37.
 2019-05-28 23:55:33 +02:00
Ricardo Wurmus 9a749cad19
gnu: r-etm: Update to 1.0.5. 
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
 2019-05-28 23:55:27 +02:00
Ricardo Wurmus 10dbc3fc54
gnu: r-cmprsk: Update to 2.2-8. 
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
 2019-05-28 23:55:21 +02:00
Ricardo Wurmus fa10f0d330
gnu: r-ks: Update to 1.11.5. 
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
 2019-05-28 23:55:14 +02:00
Ricardo Wurmus 1d7bde781f
gnu: r-bayesplot: Update to 1.7.0. 
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0.
[propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
 2019-05-28 23:54:53 +02:00
Ricardo Wurmus 27abdb11ae
gnu: r-refgenome: Update to 1.7.7. 
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
 2019-05-28 23:54:46 +02:00
Ricardo Wurmus 794c9e7d96
gnu: r-snakecase: Update to 0.11.0. 
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
 2019-05-28 23:54:40 +02:00
Ricardo Wurmus 9dd351233b
gnu: r-openxlsx: Update to 4.1.0.1. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
 2019-05-28 23:54:36 +02:00
Ricardo Wurmus d328379d62
gnu: r-pillar: Update to 1.4.1. 
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
 2019-05-28 23:54:32 +02:00
Ricardo Wurmus 130314d8fa
gnu: r-tsp: Update to 1.1-7. 
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
 2019-05-28 23:54:26 +02:00
Ricardo Wurmus 6d3cfb88ea
gnu: r-jomo: Update to 2.6-8. 
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
 2019-05-28 23:54:18 +02:00
Ricardo Wurmus beb82eb9d0
gnu: r-ksamples: Update to 1.2-9. 
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
 2019-05-28 23:54:12 +02:00
Ricardo Wurmus 6edf0fb3db
gnu: r-lpsolve: Update to 5.6.13.1. 
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
 2019-05-28 23:54:07 +02:00
Ricardo Wurmus 14532452b8
gnu: r-car: Update to 3.0-3. 
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
 2019-05-28 23:54:00 +02:00
Ricardo Wurmus 341643c6e1
gnu: r-fpc: Update to 2.2-1. 
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1.
[propagated-inputs]: Remove r-trimcluster.
 2019-05-28 23:53:43 +02:00
Ricardo Wurmus f95690ceae
gnu: r-prabclus: Update to 2.2-7.1. 
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
 2019-05-28 23:53:33 +02:00
Ricardo Wurmus 1498b5a2a4
gnu: r-zoo: Update to 1.8-6. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
 2019-05-28 23:53:28 +02:00
Ricardo Wurmus 3fca3fa1bc
gnu: r-rmarkdown: Update to 1.13. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13.
[propagated-inputs]: Add r-xfun.
 2019-05-28 23:53:15 +02:00
Ricardo Wurmus 923c6ac139
gnu: r-evaluate: Update to 0.14. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
 2019-05-28 23:53:02 +02:00
h.nasajpour 67458e209d
gnu: python-attrs: Update to 19.1.0. 
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-28 21:48:10 +02:00
h.nasajpour 205eb40e5b
gnu: python-flask: Update to 1.0.3. 
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-05-28 21:18:24 +02:00
Pierre Neidhardt 458e92215f
gnu: d-feet: Fix missing input and update to 0.3.14. 
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14.
[inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
 2019-05-28 14:53:02 +02:00
Ludovic Courtès e7f078c337
gnu: guix: Update to 35d1354. 
* gnu/packages/package-management.scm (guix): Update to 35d1354.
 2019-05-28 09:51:12 +02:00
Nicolas Goaziou 70fa77d881
gnu: emacs-relint: Update to 1.8. 
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
 2019-05-27 23:22:34 +02:00
Nicolas Goaziou d8d896c5b5
gnu: emacs-xr: Update to 1.12. 
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
 2019-05-27 23:22:19 +02:00
Ludovic Courtès 2e5c71b2a2
gnu: guix: Add dependency on lzlib. 
* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
 2019-05-27 22:47:24 +02:00
Ricardo Wurmus 8916034a34
gnu: r-shiny: Fix JavaScript minification. 
Fixes <https://bugs.gnu.org/35923>.

* gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
 2019-05-27 22:09:22 +02:00
Guillaume LE VAILLANT ed72a133db
gnu: Add osmctools 
* gnu/packages/geo.scm (osmctools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-05-27 14:32:13 -04:00
Alex Griffin 521d736ae9
gnu: go@1.4: Update to 1.4-bootstrap-20171003. 
* gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is
still supported upstream.
[version]: Update to 1.4-bootstrap-20171003.
[arguments]: Remove obsolete fix for timezone test which is now included
upstream.  Don't manually disable cgo because it is disabled by default.
Manually enable test suite because future releases will disable tests by
default.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-05-27 14:26:46 -04:00
Danny Milosavljevic 8d1647b228
gnu: python-alembic: Update to 1.0.10. 
* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
 2019-05-27 18:16:25 +02:00
Stefan Stefanović cf342a8598
gnu: tlp: Add required x86-energy-perf-policy input dependency. 
* gnu/packages/linux.scm (tlp)
[inputs]: Add system specific x86-energy-perf-policy dependency.
[arguments]<#:phases>['wrap]:
Adjust bin-directory procedure to return #f on missing input,
a guard against system specific input dependencies.
Filter only strings in the path list. Reformat for-each block.
Add x86-energy-perf-policy in bin-directory input-name list.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 16:41:12 +02:00
Stefan Stefanović 71bd55cb2a
gnu: Add x86-energy-perf-policy. 
* gnu/packages/linux.scm (x86-energy-perf-policy): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 16:35:09 +02:00
guy fleury iteriteka 66fca5041b
gnu: MATE: Use mirror://mate/ in source URIs. 
* gnu/packages/mate.scm(MATE packages)[source](uri): Use "mirror://mate/"
  instead of "https://pub.mate-desktop.org/releases/" directly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-27 12:02:27 +02:00
Alex Vong 45bdb66251
gnu: you-get: Update to 0.4.1302. 
* gnu/packages/video.scm (you-get): Update to 0.4.1302.
 2019-05-27 02:28:26 +08:00
Mark H Weaver 5ea87197f6
gnu: linux-libre: Update to 5.1.5. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.5.
(%linux-libre-hash): Update hash.
 2019-05-26 14:19:40 -04:00
Mark H Weaver 5b7be798b2
gnu: linux-libre@4.19: Update to 4.19.46. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.46.
(%linux-libre-4.19-hash): Update hash.
 2019-05-26 14:19:38 -04:00
Mark H Weaver d87d375b64
gnu: linux-libre@4.14: Update to 4.14.122. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.122.
(%linux-libre-4.14-hash): Update hash.
 2019-05-26 14:19:35 -04:00
Mark H Weaver 5f3f63e5ad
gnu: linux-libre@4.9: Update to 4.9.179. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.179.
 2019-05-26 14:19:33 -04:00
Mark H Weaver 2bdce7a654
gnu: linux-libre: Rename a patch. 
* gnu/packages/linux.scm (%linux-libre-arm-export-__sync_icache_dcache-patch):
Remove the version from the file name, since it applies to multiple versions.
 2019-05-26 14:19:04 -04:00
Mark H Weaver 403b3a8c61
gnu: linux-libre-arm-generic: Move definition. 
* gnu/packages/linux.scm (linux-libre-arm-generic): Move the definition down,
next to the other linux-libre-arm-generic-* packages.
 2019-05-26 14:19:00 -04:00
Mark H Weaver efbbf9a15c
gnu: vhba-module: Remove duplicate definition. 
This is a followup to commit e1f640db8f.

* gnu/packages/linux.scm (vhba-module): Remove duplicate definition.
 2019-05-26 14:18:55 -04:00
Efraim Flashner 13f3893b60
gnu: bash: Update to patch level 7. 
* gnu/packages/bash.scm (%patch-series-5.0): Add patches 3 through 7.
 2019-05-26 21:18:48 +03:00
Marius Bakke 7024846181
gnu: node: Update to 10.15.3. 
* gnu/packages/libevent.scm (libuv-1.19): Remove variable.
* gnu/packages/node.scm (node): Update to 10.15.3.
[source]: Use XZ-compressed tarball.
[arguments]: Add #:test-target.  Use DELETE-FILE instead of DELETE-IF-EXISTS.
Remove obsolete test deletions.
[inputs]: Change OPENSSL to OPENSSL-NEXT.  Change LIBUV-1.19 to LIBUV.
(node-lts): Remove variable.
 2019-05-26 19:48:39 +02:00
Marius Bakke 0d3dbe3f56
gnu: libevent: Update to 2.1.0. 
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
gnu/packages/patches/libevent-2.1-skip-failing-test.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/libevent.scm (libevent): Update to 2.1.10.
[source](patches): Remove.
 2019-05-26 19:48:39 +02:00
Alex Vong 304fb7000a
gnu: youtube-dl: Update to 2019.05.20. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.05.20.

Signed-off-by: Alex Vong <alexvong1995@gmail.com>
 2019-05-27 01:34:09 +08:00
Efraim Flashner 51daf2f553
gnu: ioquake: Build on all architectures. 
* gnu/packages/game-development.scm (ioquake)[supported-systems]: Remove
field.
 2019-05-26 20:22:36 +03:00
Ricardo Wurmus 164cb4da63
gnu: pigx-chipseq: Update to 0.0.41. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.41.
 2019-05-26 10:56:52 +02:00
Brett Gilio 6d94465b4e
gnu: python-shapely: Update to 1.6.4.post2. 
* gnu/packages/python-xyz.scm (python-shapely): Update to 1.6.4.post2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-05-26 10:22:05 +02:00
Brett Gilio 7abf3cbf71
gnu: python-psutil: Update to 5.6.2. 
* gnu/packages/python-xyz.scm (python-psutil): Update to 5.6.2.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-05-26 10:22:05 +02:00
Dan Frumin 414f545ee6
gnu: coq-equations: Update to 1.2. 
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2019-05-26 10:22:05 +02:00
Rutger Helling 9c11ba9282
gnu: mgba: Update to 0.7.2. 
* gnu/packages/emulators.scm (mgba): Update to 0.7.2.
 2019-05-26 10:15:21 +02:00
Rutger Helling d21c68ac46
gnu: kitty: Update to 0.14.0. 
* gnu/packages/terminals.scm (kitty): Update to 0.14.0.
 2019-05-26 10:15:21 +02:00
Tobias Geerinckx-Rice ac12a01394
gnu: wine-staging: Update to 4.9. 
* gnu/packages/wine.scm (wine-staging-patchset-data, wine-staging):
Update to 4.9.
 2019-05-26 05:22:51 +02:00
Tobias Geerinckx-Rice 5daafe0b5d
gnu: rxcpp: Don't use unstable tarball. 
* gnu/packages/machine-learning.scm (rxcpp)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2019-05-26 05:00:50 +02:00
Tobias Geerinckx-Rice e91a0bff01
gnu: rxcpp: Update to 4.1.0. 
* gnu/packages/machine-learning.scm (rxcpp): Update to 4.1.0.
 2019-05-26 05:00:50 +02:00
Tobias Geerinckx-Rice f3addff21c
gnu: libelf: Use archived home page and mirrored source. 
* gnu/packages/elf.scm (libelf)[source]: Use mirror URLs.
[home-page]: Use archived home page.
 2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice dbe2dfa528
gnu: pidgin: Use HTTPS home page. 
* gnu/packages/messaging.scm (pidgin)[home-page]: Use HTTPS.
 2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 569958aeb5
gnu: pidgin: Add network-manager support. 
* gnu/packages/messaging.scm (pidgin)[inputs]: Add network-manager.
[arguments]: Undisable it in #:configure-flags.
 2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 0fcb0e5076
gnu: pidgin: Update to 2.13.0. 
* gnu/packages/messaging.scm (pidgin): Update to 2.13.0.
 2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice a4cf65c804
gnu: pidgin: Don't use NAME in source URI. 
* gnu/packages/messaging.scm (pidgin)[source]: Hard-code NAME.
 2019-05-26 03:27:33 +02:00
Tobias Geerinckx-Rice 8a8597819e
gnu: duplicity: Update to 0.7.19. 
* gnu/packages/backup.scm (duplicity): Update to 0.7.19.
 2019-05-26 03:27:33 +02:00
Kei Kebreau 41cdaf47e1
gnu: squirrel: Fix build. 
This follows commit 9d0c291e3e.

* gnu/packages/squirrel.scm: Adjust module reference.
 2019-05-25 06:08:23 -04:00
Brian Leung 7547648091
gnu: emacs-lispy: Update to 0.27.0. 
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 0.27.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-25 11:52:37 +02:00
Brian Leung c799fd63f6
gnu: emacs-avy: Update to 0.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-avy): Update to 0.5.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-25 11:52:37 +02:00
Brian Leung eea4ed9869
gnu: emacs-highlight-symbol: Update to 1.3.1-7a789c7. 
* gnu/packages/emacs-xyz.scm (emacs-highlight-symbol): Update to 1.3.1-7a789c7.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-05-25 11:52:33 +02:00
Kei Kebreau 8698d986db
gnu: supertux: Update to 0.6.0. 
* gnu/packages/games.scm (supertux): Update to 0.6.0.
[source]: Add patches.
[arguments]: Add -DUSE_SYSTEM_PHYSFS=ON. Add 'patch-squirrel-path' phase.
[inputs]: Add freetype and squirrel.
* gnu/packages/patches/supertux-fix-build-with-gcc5.patch,
gnu/packages/patches/supertux-unbundle-squirrel.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-05-24 21:00:15 -04:00
Kei Kebreau 608d148c50
gnu: squirrel: Install headers and documentation. 
* gnu/packages/squirrel.scm (squirrel)[arguments]: Disable building static
libraries. Add 'install-documentation' and 'install-headers' phases.
[native-inputs]: Add python-sphinx.
 2019-05-24 21:00:15 -04:00
Kei Kebreau 03b630686f
gnu: squirrel: Build from a source archive instead of a Git checkout. 
* gnu/packages/squirrel.scm (squirrel)[source]: Use url-fetch and adjust the
source URL accordingly.
 2019-05-24 21:00:15 -04:00
Marius Bakke 848e600d71
gnu: Remove help2man@1.47.6. 
* gnu/packages/man.scm (help2man): Update to 1.47.10.
(help2man/latest): Remove variable.
 2019-05-25 00:53:04 +02:00
Marius Bakke bb9dec546f
gnu: gawk: Update to 5.0.0. 
* gnu/packages/patches/libgpg-error-gawk-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (libgpg-error)[source](modules, patches): New fields.
* gnu/packages/gawk.scm (gawk): Update to 5.0.0.
 2019-05-25 00:47:54 +02:00
Marius Bakke 5dc3de3ac7
gnu: libidn2: Update to 2.2.0. 
* gnu/packages/libidn.scm (libidn2): Update to 2.2.0.
 2019-05-25 00:47:54 +02:00
Marius Bakke 91cf806425
gnu: libuv: Update to 1.29.1. 
* gnu/packages/libevent.scm (libuv): Update to 1.29.1.
 2019-05-25 00:47:54 +02:00
Marius Bakke 98be913d5b
gnu: dbus: Update to 1.12.14. 
* gnu/packages/glib.scm (dbus): Update to 1.12.14.
 2019-05-25 00:47:54 +02:00
Marius Bakke 45771d63c5
gnu: cmake: Update to 3.14.4. 
* gnu/packages/cmake.scm (cmake-minimal): Update to 3.14.4.
 2019-05-25 00:47:53 +02:00
Marius Bakke e7809d96aa
gnu: bison: Update to 3.4.1. 
* gnu/packages/bison.scm (bison): Update to 3.4.1.
 2019-05-25 00:47:53 +02:00
Marius Bakke a3e53041b8
gnu: perl: Update to 5.30.0. 
* gnu/packages/patches/perl-no-sys-dirs.patch: Adjust Errno.h hunk.
* gnu/packages/perl.scm (perl): Update to 5.30.0.
 2019-05-25 00:47:53 +02:00
Marius Bakke 1b4c3faff4
gnu: curl: Remove unused module import. 
This is a follow-up to commit 52cb7748cb.

* gnu/packages/curl.scm: Don't import (gnu packages ssh).
 2019-05-25 00:47:53 +02:00
Marius Bakke 74659ebef1
gnu: curl: Remove graft for 7.65.0. 
* gnu/packages/curl.scm (curl): Update to 7.65.0.
(curl-7.65.0): Remove variable.
 2019-05-25 00:30:09 +02:00
Marius Bakke 57df83e07d
Merge branch 'staging' into core-updates 2019-05-25 00:25:15 +02:00
Marius Bakke 136b7d81f0
gnu: nss, nss-certs: Update to 3.44. 
* gnu/packages/nss.scm (nss): Update to 3.44.
* gnu/packages/certs.scm (nss-certs): Likewise.
 2019-05-24 23:28:32 +02:00
Marius Bakke d43a696080
gnu: imagemagick: Update to 6.9.10-46. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-46.
 2019-05-24 23:28:32 +02:00
Marius Bakke 736b66a099
gnu: eudev: Update to 3.2.8. 
* gnu/packages/linux.scm (eudev): Update to 3.2.8.
 2019-05-24 23:28:31 +02:00
Marius Bakke b97f4a357c
gnu: python-urllib3: Update to 1.25.3. 
* gnu/packages/python-web.scm (python-urllib3): Update to 1.25.3.
 2019-05-24 23:28:31 +02:00
Marius Bakke b8725cdf94
gnu: python-pysocks: Update to 1.7.0. 
* gnu/packages/python-xyz.scm (python-pysocks): Update to 1.7.0.
 2019-05-24 23:28:31 +02:00
Marius Bakke ab43d1f827
gnu: at-spi2-core: Update to 2.32.1. 
* gnu/packages/patches/at-spi2-core-meson-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.32.1.
[source](patches): Remove.
 2019-05-24 23:28:30 +02:00
Marius Bakke b97b47b676
gnu: libva: Update to 2.4.1. 
* gnu/packages/video.scm (libva): Update to 2.4.1.
 2019-05-24 23:28:30 +02:00
Marius Bakke b2965b26ee
gnu: python-mako: Update to 1.0.10. 
* gnu/packages/python-xyz.scm (python-mako): Update to 1.0.10.
 2019-05-24 23:28:30 +02:00
Marius Bakke 05a5bd8366
gnu: python-requests: Update to 2.22.0. 
* gnu/packages/python-web.scm (python-requests): Update to 2.22.0.
 2019-05-24 23:28:29 +02:00
Marius Bakke 657e025def
gnu: cups-filters: Update to 1.23.0. 
* gnu/packages/cups.scm (cups-filters): Update to 1.23.0.
 2019-05-24 23:28:29 +02:00
Marius Bakke ab6693c45f
gnu: libical: Update to 3.0.5. 
* gnu/packages/calendar.scm (libical): Update to 3.0.5.
[native-inputs]: Add GTK-DOC.
 2019-05-24 23:28:29 +02:00
Marius Bakke 2a11a029a4
gnu: sbc: Update to 1.4. 
* gnu/packages/linux.scm (sbc): Update to 1.4.
 2019-05-24 23:28:28 +02:00
Marius Bakke d309b36d30
gnu: python-sphinx: Update to 2.0.1. 
* gnu/packages/sphinx.scm (python-sphinx): Update to 2.0.1.
[arguments]: Remove Python2 workaround.
[propagated-inputs]: Remove PYTHON-SIX and PYTHON-SPHINXCONTRIB-WEBSUPPORT.
Add PYTHON-SPHINXCONTRIB-APPLEHELP, PYTHON-SPHINXCONTRIB-DEVHELP,
PYTHON-SPHINXCONTRIB-HTMLHELP, PYTHON-SPHINXCONTRIB-JSMATH,
PYTHON-SPHINXCONTRIB-QTHELP, and PYTHON-SPHINXCONTRIB-SERIALIZINGHTML.
(python2-sphinx)[source]: Stay on version 1.7.7.
[arguments]: New field.
[propagated-inputs]: Do not inherit from the Python 3 Sphinx variant.
 2019-05-24 23:24:09 +02:00
Marius Bakke 224d2e2efd
gnu: postgresql: Remove graft for 10.8. 
* gnu/packages/databases.scm (postgresql): Update to 10.8.
[replacement]: Remove.
(postgresql-10.8): Remove variable.
 2019-05-24 22:48:59 +02:00
Marius Bakke ddb4062784
Merge branch 'master' into staging 2019-05-24 22:44:51 +02:00
Marius Bakke dbe533292b
gnu: help2man: Update to 1.47.10. 
* gnu/packages/man.scm (help2man/latest): Update to 1.47.10.
 2019-05-24 21:54:32 +02:00
Marius Bakke ceb1936aa4
gnu: python-markdown: Update to 3.1.1. 
* gnu/packages/python-xyz.scm (python-markdown): Update to 3.1.1.
 2019-05-24 21:54:32 +02:00
Marius Bakke 0cb9bacbfa
gnu: perl: Update home page. 
* gnu/packages/perl.scm (perl)[home-page]: Use HTTPS.
 2019-05-24 21:54:32 +02:00
Marius Bakke 6eceb2d445
gnu: Add python-sphinxcontrib-qthelp. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): New public variable.
 2019-05-24 21:54:32 +02:00
Marius Bakke 72f278a0ff
gnu: Add python-sphinxcontrib-htmlhelp. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): New public variable.
 2019-05-24 21:54:32 +02:00
Marius Bakke 67be8943c3
gnu: Add python-sphinxcontrib-jsmath. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-jsmath): New public variable.
 2019-05-24 21:54:31 +02:00
Marius Bakke 62ad0c8b0f
gnu: Add python-sphinxcontrib-devhelp. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): New public variable.
 2019-05-24 21:54:31 +02:00
Marius Bakke bc2a3f7c62
gnu: Add python-sphinxcontrib-applehelp. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): New public variable.
 2019-05-24 21:54:31 +02:00
Marius Bakke c5c55a9f2c
gnu: Add python-sphinxcontrib-serializinghtml. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): New public
variable.
 2019-05-24 21:54:31 +02:00
Marius Bakke 9d0c291e3e
gnu: Move Sphinx and friends to (gnu packages sphinx). 
* gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport,
python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx,
python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme,
python2-sphinx-rtd-theme, python-guzzle-sphinx-theme,
python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed,
python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput,
python-sphinx-repoze-interface, python2-sphinx-repoze-interface,
python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme,
python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme,
python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ...
(gnu):
* gnu/packages/sphinx.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
* gnu/packages/admin.scm, gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm, gnu/packages/cluster.scm,
gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm,
gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm,
gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm,
gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm,
gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm,
gnu/packages/search.scm, gnu/packages/statistics.scm,
gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm,
gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports.
 2019-05-24 21:54:31 +02:00
Marius Bakke a52c807a39
gnu: postgresql: Replace with 10.8 [security fixes]. 
This fixes CVE-2019-10129 and CVE-2019-10130.

* gnu/packages/databases.scm (postgresql)[replacement]: New field.
(postgresql-10.8): New variable.
 2019-05-24 21:54:30 +02:00
Dan Frumin 66fbffde1f
gnu: Add coq-stdpp. 
* gnu/packages/coq.scm (coq-stdpp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-24 18:24:16 +02:00
Reza Alizadeh Majd 8f5371d083
gnu: lxqt-panel: fix taskbar plugin's application list issue. 
* gnu/packages/lxqt.scm (lxqt-panel): move `kwindowsystem` from `inputs`
to `propagated-inputs`

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-24 18:24:16 +02:00
Reza Alizadeh Majd 42f3eb2e7f
gnu: lxqt-session: fix lxqt-rc.xml permission issue 
* gnu/packages/lxqt.scm (lxqt-session): add write permission to
lxqt-rc.xml file after initial copy to user directory

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-24 18:24:16 +02:00
Andy Tai 43675ac77a
gnu: Add libjit. 
* gnu/packages/assembly.scm (libjit): Add at 0.1.4

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2019-05-24 18:24:16 +02:00
Ludovic Courtès fc289fb21b
gnu: guile-next: Update to 2.9.2. 
* gnu/packages/guile.scm (guile-next): Update to 2.9.2.
 2019-05-24 18:24:16 +02:00
Jakob L. Kreuze fc16bbb7aa
gnu: Add chocolate-doom. 
* gnu/packages/games.scm (chocolate-doom): New variables.
 2019-05-24 10:49:49 -04:00
Rutger Helling b019965cc5
gnu: gajim-omemo: Update to 2.6.29. 
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.29.
 2019-05-24 08:14:44 +02:00
Tobias Geerinckx-Rice e26d628b0f
gnu: parallel: Update to 20190522. 
* gnu/packages/parallel.scm (parallel): Update to 20190522.
 2019-05-23 22:07:48 +02:00
Efraim Flashner 234999497d
gnu: wgetpaste: Remove dead paste site. 
* gnu/packages/wget.scm (wgetpaste)[arguments]: Add custom phase to
remove newly defunct paste site.
 2019-05-23 20:58:47 +03:00
Pierre Neidhardt e4ff9dffe7
gnu: Add ioquake3. 
* gnu/packages/game-development.scm (ioquake3): New variable.
 2019-05-23 18:55:21 +02:00
Marius Bakke cee9b0566d
gnu: strace: Update to 5.1. 
* gnu/packages/linux.scm (strace): Update to 5.1.
 2019-05-23 17:49:06 +02:00
Marius Bakke 3d3c07f3ee
gnu: notmuch: Update to 0.28.4. 
* gnu/packages/mail.scm (notmuch): Update to 0.28.4.
[native-inputs]: Change PYTHON-2 and PYTHON2-DOCUTILS to PYTHON and
PYTHON-DOCUTILS.
 2019-05-23 17:49:06 +02:00
Nicolas Goaziou f41378b797
gnu: silkaj: Update to 0.7.0. 
* gnu/packages/finance.scm (silkaj): Update to 0.7.0.
[inputs]: Add python-texttable.
 2019-05-23 16:52:55 +02:00
Nicolas Goaziou 3425fbc69f
gnu: flare-game: Update to 1.10. 
* gnu/packages/games.scm (flare-game): Update to 1.10.
 2019-05-23 16:46:45 +02:00
Nicolas Goaziou 729f0ccbb5
gnu: flare-engine: Update to 1.10. 
* gnu/packages/games.scm (flare-engine): Update to 1.10.
 2019-05-23 16:46:32 +02:00
Ricardo Wurmus a9150d4c23
gnu: salmon: Update to 0.13.1. 
* gnu/packages/bioinformatics.scm (salmon): Update to 0.13.1.
[arguments]: Adjust "do-not-look-for-boost" build phase; adjust
"prepare-rapmap" phase; adjust "use-system-libraries" phase.
[inputs]: Remove bwa, jellyfish, spdlog-for-salmon.
[native-inputs]: Add pkg-config.
(spdlog-for-salmon, bwa-for-salmon): Remove variables.
 2019-05-23 16:32:21 +02:00
Nicolas Goaziou f918a296e8
gnu: python-duniterpy: Update to 0.54.1. 
* gnu/packages/finance.scm (python-duniterpy): Update to 0.54.1.
 2019-05-23 16:23:03 +02:00
Nicolas Goaziou 6406badb2a
gnu: wireshark: Update to 3.0.2. 
* gnu/packages/networking.scm (wireshark): Update to 3.0.2.
 2019-05-23 16:16:55 +02:00
Nicolas Goaziou 0f3794fb7c
gnu: keepassxc: Update to 2.4.1. 
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.1.
[arguments]: Disable update checking.
[inputs]: Add qrencode and qtsvg.
 2019-05-23 14:53:36 +02:00
Andy Tai 39d655f8cf
gnu: Add squirrel. 
* gnu/packages/squirrel.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-05-22 21:36:45 -04:00
Vagrant Cascadian dcdafc6e18
gnu: xf86-input-joystick: Fix typo "control". 
* gnu/packages/xorg (xf86-input-joystick)[description]: Fix typo.
 2019-05-22 18:30:05 -07:00
Vagrant Cascadian c284dffcbe
gnu: renderproto: Fix typo "protocol". 
* gnu/packages/xorg (renderproto)[description]: Fix typo.
 2019-05-22 18:30:03 -07:00
Vagrant Cascadian 168d5634a6
gnu: xautomation: Fix typo "programs". 
* gnu/packages/xdisorg (xautomation)[description]: Fix typo.
 2019-05-22 18:30:00 -07:00
Vagrant Cascadian 4ba51e22c7
gnu: nghttp2: Fix typo "compatibility". 
* gnu/packages/web (nghttp2)[description]: Fix typo.
 2019-05-22 18:29:58 -07:00
Vagrant Cascadian 1bb5085694
gnu: python-internetarchive: Fix typo "programmatic". 
* gnu/packages/web (python-internetarchive)[description]: Fix typo.
 2019-05-22 18:29:55 -07:00
Vagrant Cascadian e54af3225d
gnu: ruby-markaby: Fix typo "Embedded". 
* gnu/packages/ruby (ruby-markaby)[description]: Fix typo.
 2019-05-22 18:29:52 -07:00
Vagrant Cascadian 50fceab07e
gnu: python-honcho: Fix typo "several". 
* gnu/packages/python-xyz (python-honcho)[description]: Fix typo.
 2019-05-22 18:29:50 -07:00
Vagrant Cascadian 7cc9ef9c20
gnu: perl-text-csv-xs: Fix typo "Routines". 
* gnu/packages/perl (perl-text-csv-xs)[synopsis]: Fix typo.
 2019-05-22 18:29:47 -07:00
Vagrant Cascadian 95480b9b51
gnu: perl-moox-handlesvia: Fix typo "attribute". 
* gnu/packages/perl (perl-moox-handlesvia)[description]: Fix typo.
 2019-05-22 18:29:45 -07:00
Vagrant Cascadian 55f54fb921
gnu: perl-data-uniqid: Fix typo "system". 
* gnu/packages/perl (perl-data-uniqid)[description]: Fix typo.
 2019-05-22 18:29:43 -07:00
Vagrant Cascadian d6901d933b
gnu: pdfposter: Fix typo "multiple". 
* gnu/packages/pdf (pdfposter)[description]: Fix typo.
 2019-05-22 18:29:40 -07:00
Vagrant Cascadian 37c5b197bb
gnu: ocaml-compiler-libs: Fix typo "package". 
* gnu/packages/ocaml (ocaml-compiler-libs)[description]: Fix typo.
 2019-05-22 18:29:38 -07:00
Vagrant Cascadian 86912a67ac
gnu: ocaml-migrate-parsetree: Fix typo "converter". 
* gnu/packages/ocaml (ocaml-migrate-parsetree)[synopsis]: Fix typo.
 2019-05-22 18:29:36 -07:00
Vagrant Cascadian 57e69c1d2e
gnu: mumps: Fix typo "Gaussian". 
* gnu/packages/maths (mumps)[description]: Fix typo.
 2019-05-22 18:29:33 -07:00
Vagrant Cascadian 245289f8dd
gnu: lxqt-policykit: Fix typo "authentication". 
* gnu/packages/lxqt (lxqt-policykit)[description]: Fix typo.
 2019-05-22 18:29:30 -07:00
Vagrant Cascadian c42dcaa91e
gnu: ghc-persistent: Fix typo "systems". 
* gnu/packages/haskell (ghc-persistent)[description]: Fix typo.
 2019-05-22 18:22:09 -07:00
Vagrant Cascadian b5cfc89f2d
gnu: ghc-reflection: Fix typo "propagating". 
* gnu/packages/haskell (ghc-reflection)[description]: Fix typo.
 2019-05-22 18:22:03 -07:00
Vagrant Cascadian 7306eb5cf5
gnu: ghc-aeson-pretty: Fix typo "readability". 
* gnu/packages/haskell-web (ghc-aeson-pretty)[description]: Fix typo.
 2019-05-22 18:22:01 -07:00
Vagrant Cascadian 2ec41781d5
gnu: go-github-com-btcsuite-btcd-btcec: Fix typo "significantly". 
* gnu/packages/golang (go-github-com-btcsuite-btcd-btcec)[description]: Fix
  typo.
 2019-05-22 18:21:58 -07:00
Vagrant Cascadian a95b643630
gnu: go-github-com-docker-distribution: Correct grammar and spelling. 
* gnu/packages/golang (go-github-com-docker-distribution)[description]:
  Correct grammar and spelling.
  [synopsis]: Correct grammar and spelling.
 2019-05-22 18:21:56 -07:00
Vagrant Cascadian ae03ce0f2f
gnu: go-github-com-google-cadvisor: Fix typo "performance". 
* gnu/packages/golang (go-github-com-google-cadvisor)[description]: Fix typo.
 2019-05-22 18:21:54 -07:00
Vagrant Cascadian ce97f33656
gnu: go-golang-org-x-net-context: Fix typo "cancellation". 
* gnu/packages/golang (go-golang-org-x-net-context)[description]: Fix typo.
 2019-05-22 18:21:51 -07:00
Vagrant Cascadian b55b96a73c
gnu: go-github-com-petermattis-goid: Fix typo "programmatically". 
* gnu/packages/syncthing (go-github-com-petermattis-goid)[description]: Fix
  typo.
 2019-05-22 18:21:49 -07:00
Vagrant Cascadian 4ca7207be2
gnu: python-docopt: Fix typo "programmatically". 
* gnu/packages/python-xyz (python-docopt)[description]: Fix typo.
 2019-05-22 18:21:46 -07:00
Vagrant Cascadian 5c6b576ab8
gnu: go-github-com-tj-docopt: Fix typo "programmatically". 
* gnu/packages/golang (go-github-com-tj-docopt)[description]: Fix typo.
 2019-05-22 18:21:44 -07:00
Vagrant Cascadian e16b44a20c
gnu: font-tamzen: Fix typo "programmatically". 
* gnu/packages/fonts (font-tamzen)[description]: Fix typo.
 2019-05-22 18:21:42 -07:00
Vagrant Cascadian add43093ac
gnu: dbus-c++: Fix typo "language". 
* gnu/packages/glib (dbus-c++)[description]: Fix typo.
 2019-05-22 18:21:39 -07:00
Vagrant Cascadian afe02c1a12
gnu: infiniband-diags: Fix typo "diagnostic". 
* gnu/packages/fabric-management (infiniband-diags)[description]: Fix typo.
 2019-05-22 18:21:35 -07:00
Vagrant Cascadian a265b400b4
gnu: emacs-noflet: Fix typo "lets you". 
* gnu/packages/emacs-xyz (emacs-noflet)[description]: Fix typo.
 2019-05-22 18:21:33 -07:00
Vagrant Cascadian b9c0d5446c
gnu: emacs-lsp-mode: Fix typo "implementation". 
* gnu/packages/emacs-xyz (emacs-lsp-mode)[description]: Fix typo.
 2019-05-22 18:21:31 -07:00
Vagrant Cascadian 4dc559ab49
gnu: emacs-groovy-modes: Fix typo "highlighting". 
* gnu/packages/emacs-xyz (emacs-groovy-modes)[description]: Fix typo.
 2019-05-22 18:21:28 -07:00
Vagrant Cascadian 0a71b5dc09
gnu: emacs-evil-surround: Fix typo "parentheses". 
* gnu/packages/emacs-xyz (emacs-evil-surround)
  [synopsis]: Fix typo.
  [description]: Fix typo.
 2019-05-22 18:21:26 -07:00
Vagrant Cascadian 27513c441c
gnu: emacs-lua-mode: Fix typo "programming". 
* gnu/packages/emacs-xyz (emacs-lua-mode)[description]: Fix typo.
 2019-05-22 18:21:23 -07:00
Vagrant Cascadian 7d4e465e33
gnu: emacs-sly: Fix typo "familiar". 
* gnu/packages/emacs-xyz (emacs-sly)[description]: Fix typo.
 2019-05-22 18:21:21 -07:00
Vagrant Cascadian 028dab34db
gnu: emacs-rspec: Fix typo "corresponding". 
* gnu/packages/emacs-xyz (emacs-rspec)[description]: Fix typo.
 2019-05-22 18:21:19 -07:00
Vagrant Cascadian 784c3da11e
gnu: hdf5-parallel-openmpi: Fix typo "explicitly". 
* gnu/packages/maths (hdf5-parallel-openmpi): Fix typo.
 2019-05-22 18:21:16 -07:00
Vagrant Cascadian 6a16b8aa68
gnu: kicad: Fix typo "explicitly". 
* gnu/packages/engineering (kicad): Fix typo in comment.
 2019-05-22 18:21:14 -07:00
Vagrant Cascadian f457397ad7
gnu: stress-make: Fix typo "explicitly". 
* gnu/packages/debug (stress-make)[description]: Fix typo.
 2019-05-22 18:21:11 -07:00
Vagrant Cascadian d087a3a6c1
gnu: python-trollius-redis: Fix typo "asynchronous". 
* gnu/packages/databases (python-trollius-redis)[description]: Fix typo.
 2019-05-22 18:09:47 -07:00
Vagrant Cascadian 49369a0130
gnu: r-capushe: Fix typo "penalties". 
* gnu/packages/cran (r-capushe)[description]: Fix typo.
 2019-05-22 18:09:44 -07:00
Vagrant Cascadian 6fa0914a5c
gnu: java-ops4j-pax-tinybundles: Fix typo "convenient". 
* gnu/packages/java (java-ops4j-pax-tinybundles)[description]: Fix typo.
 2019-05-22 18:09:40 -07:00
Vagrant Cascadian 7fef0800b3
gnu: go-github.com-smartystreets-assertions: Fix typo "convenient". 
* gnu/packages/check (go-github.com-smartystreets-assertions)[description]:
  Fix typo.
 2019-05-22 18:09:38 -07:00
Vagrant Cascadian bf70490223
gnu: umi-tools: Fix typo "containing". 
* gnu/packages/bioinformatics (umi-tools)[description]: Fix typo.
 2019-05-22 18:09:35 -07:00
Vagrant Cascadian df5fb3ca28
gnu: r-gage: Fix typo "functions". 
* gnu/packages/bioinformatics (r-gage)[description]: Fix typo.
 2019-05-22 18:09:32 -07:00