97b07aaa41
gnu: Add perl-module-pluggable.
...
This Perl module was moved out of Perl core in v5.19.0.
* gnu/packages/perl.scm (perl-module-pluggable): New variable.
* gnu/packages/patches/perl-module-pluggable-search.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-20 17:45:31 -06:00
7b158c4ee2
gnu: Add perl-cgi.
...
The CGI module was removed from Perl core in v5.21.0.
* gnu/packages/web.scm (perl-cgi): New variable.
2016-01-20 17:45:31 -06:00
893106cbbf
services: avahi: Export service type.
...
* gnu/services/avahi.scm: Export 'avahi-service-type'.
2016-01-21 00:22:34 +01:00
80b64ee2d8
gnu: isc-dhcp: Update bundled bind to 9.9.8-P3 [fixes CVE-2015-8704].
...
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.8-P3.
2016-01-20 14:58:40 -05:00
d912db5bc0
gnu: bind-utils: Update to 9.10.3-P3 [fixes CVE-2015-8704].
...
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P3.
2016-01-20 14:57:06 -05:00
beed3af565
gnu: linux-libre: Add fix for CVE-2016-0728.
...
* gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre)[source]: Add patch.
2016-01-20 13:23:42 -05:00
d4df203292
gnu: obs: Add support for webcams.
...
* gnu/packages/video.scm (obs)[inputs]: Add v4l-utils.
2016-01-20 11:46:45 -05:00
945d985aab
gnu: Add v4l-utils.
...
* gnu/packages/video.scm (v4l-utils): New variable.
2016-01-20 11:46:45 -05:00
f32ee38fcd
gnu: arb: Correct patch.
...
* gnu/packages/patches/arb-ldconfig.patch: Correct erroneously committed file.
This is a follow-up to commit ffc8f34511
2016-01-20 16:57:17 +01:00
ffc8f34511
gnu: arb: Update to 2.8.1.
...
* gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch.
* gnu/packages/patches/arb-ldconfig.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
2016-01-20 16:33:34 +01:00
05944b3aa6
gnu: doxygen: Drop propagated input graphviz.
...
* gnu/packages/doxygen.scm (doxygen)[propagated-inputs]: Drop graphviz.
2016-01-20 13:23:25 +01:00
7c853c02b8
gnu: doxygen: Update to 1.8.11.
...
* gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11.
Drop one patch.
[build-system]: Switch to cmake-build-system, since gnu-build-system
is not supported any more.
[arguments]: Adapt.
[native-inputs]: Drop unused perl.
* gnu/packages/patches/doxygen-tmake.patch: Remove file.
* gnu/packages/patches/doxygen-test.patch: Adapt.
* gnu-system.am (dist_patch_DATA): Unregister patch.
2016-01-20 13:19:48 +01:00
4c3d2b2a8f
gnu: enlightenment: Update to 0.20.3.
...
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.20.3.
2016-01-20 12:37:21 +02:00
0568dbabe0
gnu: libshout: Update to 2.4.1.
...
* gnu/packages/xiph.scm (libshout): Update to 2.4.1.
2016-01-20 02:12:23 +02:00
1c3d37e648
gnu: opusfile: Update to 0.7.
...
* gnu/packages/xiph.scm (opusfile): Update to 0.7.
2016-01-20 02:12:23 +02:00
275cc09280
gnu: opus: Update to 1.1.2.
...
* gnu/packages/xiph.scm (opus): Update to 1.1.2.
2016-01-20 02:12:23 +02:00
55ca5e8095
gnu: lilypond: Double 'max-silent-time'.
...
Suggested by Mark H Weaver <mhw@netris.org>.
* gnu/packages/music.scm (lilypond)[properties]: New field.
2016-01-19 22:14:15 +01:00
16966d5b4d
gnu: fdm: Adjust license link to point to web-accessible copy of command.c
...
* gnu/packages/mail.scm (fdm): Adjusted license field
2016-01-19 07:54:18 -08:00
34dd26af49
gnu: Add fdm.
...
* gnu/packages/mail.scm (fdm): New variable.
2016-01-18 21:51:45 -08:00
afe9f40949
Merge branch 'master' into core-updates
2016-01-19 00:18:37 -05:00
1348185ac2
gnu: Add linux-libre-4.2.5
...
* gnu/packages/linux.scm (linux-libre-4.2.5): New variable.
2016-01-18 15:10:38 -08:00
26da7c2606
gnu: mpv: Update to 0.15.0.
...
* gnu/packages/video.scm (mpv): Update to 0.15.0.
2016-01-18 22:26:56 +02:00
60edbe2297
gnu: magit: Update to 2.4.0.
...
* gnu/packages/emacs.scm (magit): Update to 2.4.0.
2016-01-18 22:40:33 +03:00
d44d60d211
gnu: sxiv: Update to 1.3.2.
...
* gnu/packages/sxiv.scm (sxiv): Update to 1.3.2.
2016-01-18 22:40:33 +03:00
4c896c9195
gnu: manaplus: Update to 1.6.1.16.
...
* gnu/packages/games.scm (manaplus): Update to 1.6.1.16.
2016-01-18 22:40:33 +03:00
264ae686fa
python2-jsonschema: Add python2-functools32 to inputs.
...
* gnu/packages/python.scm (python2-jsonschema)[inputs]: Add
python2-functools32.
(python2-wheel)[native-inputs]: Specify python2-jsonschema. Add
python2-functools32.
(python2-requests)[propagated-inputs]: Specify python2-wheel.
(python2-ipython)[inputs]: Specify python2-jsonschema, python2-requests.
(python2-rauth)[propagated-inputs]: Specify python2-requests.
* gnu/packages/openstack.scm (python2-requests-mock)[propagated-inputs]:
Specify python2-requests.
(python2-tempest-lib)[propagated-inputs]: Specify python2-jsonschema.
(python2-oslosphinx)[propagated-inputs]: Specify python2-requests.
(python2-keystoneclient)[porpagated-inputs]: Specify python2-requests.
[native-inputs]: Specify python2-oslosphinx, python2-requests-mock,
python2-tempest-lib.
(python2-swiftclient)[propagated-inputs]: Specify python2-requests,
python2-oslosphinx.
2016-01-18 17:23:37 +02:00
058247efff
gnu: datamash: Update to 1.1.0.
...
* gnu/packages/datamash.scm (datamash): Update to 1.1.0.
2016-01-18 12:14:20 +02:00
8047d13dcf
gnu: mariadb: Update to 10.0.23.
...
* gnu/packages/databases.scm (mariadb): Update to 10.0.23.
2016-01-18 01:43:07 -05:00
51a277d8e8
gnu: rsync: Update to 3.1.2.
...
* gnu/packages/rsync.scm (rsync): Update to 3.1.2.
2016-01-17 21:44:31 -05:00
e8309291a7
gnu: solfege: Build scores with Lilypond.
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* gnu/packages/music.scm (solfege)[inputs]: Add "lilypond".
2016-01-17 22:57:58 +01:00
18ef998bfc
gnu: bristol: Remove SSE flags on platforms other than x86_64 and i686.
...
* gnu/packages/music.scm (bristol)[arguments]: Add phase
"remove-sse-flags" to remove unsupported optimizations on platforms
other than x86_64 and i686.
2016-01-17 22:57:58 +01:00
b153f9f0a9
linux-initrd: Remove "usbkbd" from the default set of modules.
...
Reported by Ricardo Wurmus <rekado@elephly.net>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20433#39 >.
* gnu/system/linux-initrd.scm (base-initrd): Remove "usbkbd".
2016-01-17 22:01:47 +01:00
e8d2168c27
gnu: Add git-annex-remote-hubic.
...
* gnu/packages/version-control.scm (git-annex-remote-hubic): New variable.
2016-01-17 22:37:04 +02:00
c18f636823
gnu: Add python-urllib3.
...
* gnu/packages/python.scm (python-urllib3, python2-urllib3): New variables.
2016-01-17 22:37:04 +02:00
e1ba074999
gnu: python-wheel: Clarify description.
...
* gnu/packages/python.scm (python-wheel): Do it.
2016-01-17 22:37:04 +02:00
10468636ff
gnu: python-pytest-cov: Clarify description.
...
* gnu/packages/python.scm (python-pytest-cov): Do it.
2016-01-17 22:37:04 +02:00
1abe448d56
gnu: Add python2-functools32.
...
* gnu/packages/python.scm (python2-functools32): New variable.
2016-01-17 22:37:04 +02:00
5988c299c4
gnu: Add python-pyasn1-modules.
...
* gnu/packages/python.scm (python-pyasn1-modules)
(python2-pyasn1-modules): New variables.
2016-01-17 22:37:04 +02:00
81f7f29752
gnu: Add python-rauth.
...
* gnu/packages/python.scm (python-rauth, python2-rauth): New variables.
2016-01-17 22:37:04 +02:00
8f0cc2ffce
gnu: Add python-swiftclient.
...
* gnu/packages/openstack.scm (python-swiftclient, python2-swiftclient):
New variables.
2016-01-17 22:37:04 +02:00
7a5b944eb5
gnu: Add python-futures.
...
* gnu/packages/python.scm (python-futures, python2-futures): New variables.
2016-01-17 22:37:04 +02:00
c9e330d001
gnu: Add python-keystoneclient.
...
* gnu/packages/openstack.scm (python-keystoneclient)
(python2-keystoneclient): New variables.
2016-01-17 22:37:04 +02:00
fb492b9a64
gnu: vmpk: Update to 0.6.2a.
...
* gnu/packages/music.scm (vmpk): Update to 0.6.2a.
2016-01-17 19:57:07 +01:00
cfac12723a
gnu: drumstick: Update to 1.0.2.
...
* gnu/packages/music.scm (drumstick): Update to 1.0.2.
2016-01-17 19:57:00 +01:00
81c29cccaa
gnu: mpv: Add features.
...
* gnu/packages/video.scm (mpv)[inputs]: Add libvdpau.
[arguments]: Add gpl3 and zsh completion flags.
2016-01-17 20:43:51 +02:00
3161d32d37
gnu: Add vdpauinfo.
...
* gnu/packages/video.scm (vdpauinfo): New variable.
2016-01-17 20:43:51 +02:00
d5650f86a7
gnu: Add libvdpau.
...
* gnu/packages/video.scm (libvdpau): New variable.
2016-01-17 20:43:51 +02:00
bb8afbf5a1
gnu: Add dependency on Perl's 'Module::Build' as needed.
...
'Module::Build' was deprecated in Perl 5.20 and removed in 5.22.
Some packages need to explicitly depend on it now.
* gnu/packages/perl.scm (perl-class-factory-util):
(perl-date-manip, perl-devel-checkbin): Add 'native-inputs' field.
(perl-module-build)[description]: Mention that it used to be in Perl.
* gnu/packages/web.scm (perl-cgi-simple)[native-inputs]: Add
PERL-MODULE-BUILD.
2016-01-17 18:41:20 +01:00
2328b47c64
gnu: Add autojump.
...
* gnu/packages/admin.scm (autojump): New variable.
2016-01-17 01:44:15 -06:00
f5a8491b69
gnu: hevea: Update to 2.28.
...
* gnu/packages/ocaml.scm (hevea): Update to 2.28.
[arguments]: Add 'patch-/bin/sh phase.
2016-01-17 01:04:43 -06:00
90907a22bc
gnu: unison: Add "doc" output.
...
* gnu/packages/ocaml.scm (unison)[source]: Use svn-fetch with snippet.
[outputs]: New field.
[native-inputs]: Add ghostscript, texlive, hevea, and lynx.
[arguments]: Add 'install-doc phase.
2016-01-17 01:04:43 -06:00
2309ed6862
gnu: samtools-0.1: Adapt to changes in "samtools" variable.
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* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add
"LIBCURSES" make flag; delete "configure" phase; disable tests outside
of "substitute-keyword-arguments".
2016-01-16 15:50:51 +01:00
7ba903b6db
linux-modules: Support 'modprobe.blacklist' on the command line.
...
* gnu/build/linux-modules.scm (file-name->module-name)
(module-black-list): New procedure.
* gnu/build/linux-modules.scm (load-linux-module*): Add #:black-list
parameter.
[black-listed?, load-dependencies]: New procedures.
Use them.
2016-01-16 14:45:47 +01:00
b8300494c0
Move <boot-parameters> to (gnu system).
...
* guix/scripts/system.scm (previous-grub-entries)
(display-system-generation): Use accessors instead of matching
<boot-parameters>.
(boot-parameters, boot-parameters?, boot-parameters-label)
(boot-parameters-root-device, boot-parameters-kernel)
(boot-parameters-kernel-arguments, read-boot-parameters): Move to...
* gnu/system.scm: ... here. Export them.
2016-01-16 13:02:21 +03:00
c3e919d7a0
gnu: Add python-hy.
...
* gnu/packages/python.scm (python-hy, python2-hy): New variables.
2016-01-16 08:18:37 +08:00
e224b7d0bd
gnu: Add python-rply.
...
* gnu/packages/python.scm (python-rply, python2-rply): New variables.
2016-01-16 08:18:37 +08:00
4ecdeef8ae
gnu: Add python-astor.
...
* gnu/packages/python.scm (python-astor, python2-astor): New variables.
2016-01-16 08:18:37 +08:00
c06a3de93a
gnu: Add python-clint.
...
* gnu/packages/python.scm (python-clint, python2-clint): New variables.
2016-01-16 08:17:04 +08:00
2216e15cc3
gnu: Add python-args.
...
* gnu/packages.scm (python-args, python2-args): New variables.
2016-01-16 08:16:51 +08:00
ca3f9952d7
gnu: ffmpeg: Update to 2.8.5.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.5.
2016-01-15 18:20:21 -05:00
8d9bae4ed7
gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558].
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* gnu/packages/patches/librsvg-tests.patch: Delete file.
* gnu-system.am (dist_patch_DATA): Remove it.
* gnu/packages/gnome.scm (librsvg): Update to 2.40.13.
[source]: Remove patch.
2016-01-15 18:03:02 -05:00
78e6c4a862
gnu: Add khal.
...
* gnu/packages/calendar.scm (khal): New variable.
2016-01-15 16:45:24 -05:00
b97c1bfd56
gnu: python-urwid: Disable failing test test_remove_watch_file.
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* gnu/packages/python.scm (python-urwid)[arguments]: Add
'disable-failing-test' phase.
[source]: Use pypi-uri.
2016-01-15 16:45:24 -05:00
226d333103
gnu: Update python-tzlocal to 1.2.
...
* gnu/packages/python.scm (python-tzlocal): Update to 1.2.
[source]: Use pypi-uri.
[arguments]: Remove the custom 'unpack phase.
[native-inputs]: Remove unzip, python-setuptools.
[propagated-inputs]: Add python-pytz.
2016-01-15 16:45:24 -05:00
6bbbb53eeb
gnu: Add python-sphinxcontrib-newsfeed.
...
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15 16:45:24 -05:00
5c299bf016
gnu: Add python-icalendar.
...
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15 16:45:24 -05:00
a2f6a3d502
gnu: Add vdirsyncer.
...
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15 16:45:24 -05:00
f75bbb028a
gnu: Add radicale.
...
* gnu/packages/dav.scm (radicale): New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15 16:45:24 -05:00
89b8a5516f
gnu: Add python-pytest-xprocess.
...
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15 16:45:24 -05:00
28cecbb7cc
gnu: Add python-wsgi-intercept.
...
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15 16:45:24 -05:00
d7e729fe08
gnu: Add python-pytest-localserver.
...
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15 16:45:24 -05:00
6720dbb49f
gnu: Add python-pytest-cache.
...
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15 16:45:24 -05:00
848964fe11
gnu: Add python-execnet.
...
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15 16:45:24 -05:00
7b3a4ee4c3
gnu: Add python-apipkg.
...
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15 16:45:24 -05:00
7b17cab902
gnu: Add python-click-log.
...
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15 16:45:24 -05:00
d1deb90b3f
gnu: Add python-click-threading.
...
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15 16:45:24 -05:00
561bb3cb1a
gnu: Add python-requests-toolbelt.
...
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15 16:45:24 -05:00
5c6eea2ad1
gnu: Add python-atomicwrites.
...
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15 16:45:24 -05:00
f5ca44b86e
gnu: glade: Update to 3.18.5.
...
* gnu/packages/gnome.scm (glade): Update to 3.18.5.
[arguments]: Disable tests; add "fix-docbook" phase.
[inputs]: Replace "gtk+-2" with "gtk+".
[native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl";
replace "python" with "python-2".
2016-01-15 22:29:37 +01:00
89b48232f8
gnu: automake: Adjust to deal with Perl 5.22.
...
Fixes <http://bugs.gnu.org/22375 >.
* gnu/packages/patches/automake-regexp-syntax.patch: New file.
* gnu/packages/autotools.scm (automake)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-15 14:23:46 +01:00
45f2ffb48c
gnu: openssh: Update to 7.1p2.
...
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15 02:46:12 -05:00
1beec63ac8
Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."
...
This reverts commit 6d139e53b5
2016-01-15 02:45:58 -05:00
6d139e53b5
gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].
...
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14 10:39:00 -05:00
df1f1d6936
gnu: Add docker-compose.
...
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14 09:17:12 -05:00
b42c9c8124
gnu: Add python-dockerpty.
...
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14 09:16:22 -05:00
d020bfc2df
gnu: Add python-docker-py.
...
* gnu/packages/docker.scm: New file.
* Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14 09:16:22 -05:00
67c52bb3e7
gnu: Add python-websocket-client.
...
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14 09:12:23 -05:00
210bf49754
gnu: Add python-texttable.
...
* gnu/packages/python.scm (python-texttable, python2-texttable): New
variables.
2016-01-14 09:12:23 -05:00
b3667afbd2
gnu: Update python-jsonschema to 2.5.1.
...
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1.
[inputs]: Add python-vcversioner.
2016-01-14 09:12:06 -05:00
ea521b42c2
gnu: Add python-vcversioner.
...
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New
variables.
2016-01-14 09:05:19 -05:00
e90051808b
gnu: Add version 2.7 variant of python-requests.
...
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14 09:05:19 -05:00
3141b83d4d
gnu: r-go-db: Add missing input.
...
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add
"r-annotationdbi".
2016-01-14 14:43:59 +01:00
d7786ce9b0
gnu: r-sparsem: Add missing "gfortran" input.
...
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14 14:43:59 +01:00
0047d26a22
gnu: bowtie: Update to 2.2.6.
...
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6.
[source]: Remove patch; do not set CC and CPP variables.
[inputs]: Add "tbb".
[arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom
"install" phase.
* gnu/packages/patches/bowtie-fix-makefile.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14 14:43:25 +01:00
2d12284d38
gnu: gnupg: Add TOFU support.
...
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14 15:05:36 +02:00
76002e54f2
gnu: gawk: Protect against random failures of the 'fts' test.
...
* gnu/packages/patches/gawk-fts-test.patch: New file.
* gnu/packages/gawk.scm (gawk)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-01-14 10:43:08 +01:00
6b6f7d6a0e
gnu: orfm: Update to 0.5.3.
...
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3.
[native-inputs]: Add inputs required for tests.
[description]: Add commas.
2016-01-14 08:00:10 +10:00
3d84a99e73
gnu: Add ruby-bio-commandeer.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14 08:00:02 +10:00
7c033c4627
gnu: Add ruby-systemu.
...
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-14 07:51:44 +10:00
ca7ef4d418
gnu: cross-gcc-arguments: Enable C++, disable building of libstdc++-v3.
...
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Disable
building libstdc++-v3 and enable building C++ compiler.
2016-01-13 22:32:37 +01:00
8c986ab120
Merge branch 'master' into core-updates
2016-01-13 18:18:48 +01:00
e5a19fed19
gnu: julia: Update to 0.4.3.
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* gnu/packages/julia.scm (julia): Update to 0.4.3.
(libuv-julia): Update to 07730c4bd595.
2016-01-13 17:05:38 +01:00
75418ae0fd
gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].
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* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13 09:38:57 -05:00
c44734115a
gnu: samtools: Update to 1.3.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.3.
[arguments]: Enable tests for all architectures; set ncurses in
configure-flags instead of make-flags; simplify "patch-tests" phase;
restore "configure" phase.
2016-01-13 15:12:22 +01:00
98f2339189
gnu: skribilo: Update to 0.9.3.
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* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3.
[native-inputs]: New field.
2016-01-13 11:13:34 +01:00
c91d3fb7f4
gnu: boost: Update to 1.60.0.
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* gnu/packages/boost.scm (boost): Update to 1.60.0.
[source]: Remove patch.
* gnu/packages/patches/boost-mips-avoid-m32.patch: Delete patch
* gnu-system.am (dist_patch_DATA): Remove patch.
Also fix dependent packages:
* gnu/packages/patches/csound-header-ordering.patch: New patch.
* gnu/packages/audio.scm (csound)[source]: Use it.
[arguments]: Add 'set-flags phase.
* gnu/packages/patches/libcmis-fix-test-onedrive.patch: New patch.
* gnu/packages/libreoffice.scm (libcmis)[source]: Use it.
(libreoffice)[arguments]: Add LDFLAGS to #:configure-flags.
(librevenge)[inputs]: Move boost from here...
[propogated-inputs]: to here.
[arguments]: Add LDFLAGS to #:configure-flags.
* gnu/packages/patches/openimageio-boost-1.60.patch: New patch.
* gnu/packages/graphics.scm (openimageio): Use it.
* gnu-system.am (dist_patch_DATA): Add patches.
2016-01-12 21:07:53 +01:00
3abe8136fd
gnu: boost: Use modify-phases.
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* gnu/packages/boost.scm (boost)[arguments]: Use modify-phases.
2016-01-12 20:53:14 +01:00
203795acea
gnu: perl: Add fix for CVE-2015-8607.
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* gnu/packages/patches/perl-CVE-2015-8607.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/perl.scm (perl)[source]: Add patch.
2016-01-12 13:12:07 -05:00
ce3ac6670c
gnu: perl: Update to 5.22.1.
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* gnu/packages/perl.scm (perl): Update to 5.22.1.
2016-01-12 13:10:05 -05:00
16aa649117
gnu: sudo: Add fix for CVE-2015-5602.
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* gnu/packages/patches/sudo-CVE-2015-5602.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (sudo)[source]: Add patch.
2016-01-12 11:23:06 -05:00
9d9951d6a6
gnu: global: Use modify-phases syntax.
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* gnu/packages/code.scm (global)[arguments]: Use modify-phases syntax.
2016-01-12 14:47:10 +02:00
94c3a6f1a6
gnu: global: Update to 6.5.2.
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* gnu/packages/code.scm (global): Update to 6.5.2.
2016-01-12 14:39:15 +02:00
9f40b1171b
gnu: icedtea-6: Fix directory name in "unpack" phase.
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* gnu/packages/java.scm (icedtea-6)[arguments]: Change the directory
prefix in the "unpack" phase to "icedtea6-".
2016-01-12 11:39:21 +01:00
6b0d24b17c
gnu: linux-libre: Update to 4.4.
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* gnu/packages/linux.scm (linux-libre): Update to 4.4.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update from
<https://jxself.org/git/kernel-configs.git >.
2016-01-11 19:13:37 -05:00
81f3e0c1f3
gnu: Add fxtract.
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* gnu/packages/bioinformatics.scm (fxtract): New variable.
2016-01-12 07:49:19 +10:00
65e84e3176
gnu: ruby: Update to 2.3.0.
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* gnu/packages/ruby.scm (ruby): Update to 2.3.0.
[source]: Remove bundled libffi.
[arguments]: Use parallel tests.
(ruby-2.2): New variable.
2016-01-11 21:59:06 +10:00
9656b8bec5
gnu: ruby: Use modify-phases.
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* gnu/packages/ruby.scm (ruby)[arguments]: Use modify-phases.
2016-01-11 21:59:06 +10:00
761e7042f6
ruby: Abstract out path to GEM_HOME.
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Previously paths to the GEM_HOME of certain Ruby packages were
hard-coded, so packages failed to build when Ruby was updated to 2.3.0.
* guix/build/ruby-build-system.scm (gem-home): New procedure.
* gnu/packages/ruby.scm (ruby-metaclass, ruby-instantiator,
ruby-introspection, ruby-mocha, ruby-minitest-tu-shim): Use it.
2016-01-11 21:58:55 +10:00
ec70fec559
gnu: youtube-dl: Update to 2016.01.09.
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* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09.
2016-01-11 13:30:50 +02:00
4879d2ff66
gnu: gp2c: Update to 0.0.9pl5.
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* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5.
2016-01-11 11:24:52 +01:00
4a6635f353
gnu: texlive: Use modify-phases syntax.
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* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases
syntax.
2016-01-11 10:59:29 +01:00
a916c82649
gnu: man-pages: Update to 4.04.
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* gnu/packages/man.scm (man-pages): Update to 4.04.
[source]: Add alternate location.
2016-01-11 09:37:50 +02:00
9b9b7ffd8e
gnu: bedtools: Update to 2.25.0.
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* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0.
[source]: Remove patch merged upstream.
[arguments]: Use 'modify-phases'. Remove
'patch-makefile-SHELL-definition' phase.
* gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file.
* gnu-system.am (dist_patch_DATA): Remove it.
2016-01-11 00:36:13 +10:00
6573ac82ad
gnu: bedtools: Use modify-phases.
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* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases.
2016-01-11 00:36:13 +10:00
048036aee5
gnu: ruby-yard: Disable failing test.
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* gnu/packages/ruby.scm (ruby-yard)[arguments]: Disable test which fails on
Ruby 2.3.0.
2016-01-10 21:10:29 +10:00
3918146b61
gnu: ruby-power-assert: Update to 0.2.7.
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* gnu/packages/ruby.scm (ruby-power-assert): Update to 0.2.7.
2016-01-10 21:09:37 +10:00
695bea9803
gnu: r: Update to 3.2.3.
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* gnu/packages/statistics.scm (r): Update to 3.2.3.
2016-01-09 23:18:28 +01:00
13035f5a03
gnu: icecat: Update to 38.5.2-gnu1.
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* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1.
2016-01-09 22:51:28 +01:00
4c40fa0229
gnu: ruby-2.1: Update to 2.1.8.
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* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8.
2016-01-09 14:53:58 +10:00
f32274a71e
gnu: i2c-tools: Update source and home-page URLs.
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* gnu/packages/linux.scm (i2c-tools)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
3a04d5d4e4
gnu: lm-sensors: Update source and home-page URLs.
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* gnu/packages/linux.scm (lm-sensors)[source]: Update URL.
[home-page]: Update URL.
2016-01-08 16:42:27 -05:00
bea25ae83c
gnu: nss: Update to 3.21 [fixes CVE-2015-7575].
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* gnu/packages/gnuzilla.scm (nss): Update to 3.21.
[arguments]: In configure phase, setenv CC=gcc.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21.
2016-01-08 15:29:50 -05:00
195f557ed5
gnu: attr: Update to 2.4.47.
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* gnu/packages/attr.scm (attr): Update to 2.4.47.
2016-01-08 16:45:32 +01:00
20c620d0a4
gnu: attr: Use 'modify-phases'.
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* gnu/packages/attr.scm (attr)[arguments]: Use 'modify-phases'.
2016-01-08 16:45:28 +01:00
2409f37f28
gnu: Add missing (gnu packages gcc) import.
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* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is
required by 'r-impute' for 'gfortran'.
2016-01-08 14:18:46 +01:00
9ef824c10e
gnu: xterm: Update to 322.
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* gnu/packages/xorg.scm (xterm): Update to 322.
2016-01-08 14:12:29 +01:00
a65e26f091
gnu: epiphany: Update to 3.18.2.
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* gnu/packages/gnome.scm (epiphany): Update to 3.18.2.
2016-01-08 17:34:08 +08:00
19e5258d84
gnu: webkitgtk: Update to 2.10.4.
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* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4.
2016-01-08 17:34:08 +08:00
209e09fa10
gnu: zlib: Update to 1.2.8.
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* gnu/packages/compression.scm (zlib): Update to 1.2.8.
2016-01-08 06:39:12 +02:00
c8d969b58f
gnu: Add Pfff.
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* gnu/packages/textutils.scm (pfff): New variable.
2016-01-07 21:13:35 +01:00
fbbaa4dde8
gnu: mpv: Remove 'samba' input.
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This is a heavy-weight and uncommon feature. See
<http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html >.
* gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'.
2016-01-07 22:30:18 +03:00
cb933df6da
gnu: Add genomation.
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* gnu/packages/bioinformatics.scm (r-genomation): New variable.
2016-01-07 17:18:17 +01:00
03ea5a357e
gnu: Add seqPattern.
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* gnu/packages/bioinformatics.scm (r-seqpattern): New variable.
2016-01-07 17:18:17 +01:00
c43a011de3
gnu: Add impute.
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* gnu/packages/bioinformatics.scm (r-impute): New variable.
2016-01-07 17:18:17 +01:00
c63cef6699
gnu: Add BSgenome.
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* gnu/packages/bioinformatics.scm (r-bsgenome): New variable.
2016-01-07 17:18:17 +01:00
fbf6045e33
gnu: Add plotly.
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* gnu/packages/statistics.scm (r-plotly): New variable.
2016-01-07 17:18:17 +01:00
a28d646b63
gnu: Add viridis.
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* gnu/packages/statistics.scm (r-viridis): New variable.
2016-01-07 17:18:17 +01:00
d547ce5e70
gnu: Add topGO.
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* gnu/packages/bioinformatics.scm (r-topgo): New variable.
2016-01-07 17:18:17 +01:00
e05c37da4a
gnu: Add matrixStats.
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* gnu/packages/statistics.scm (r-matrixstats): New variable.
2016-01-07 17:18:17 +01:00
3703ffb41f
gnu: Add R.rsp.
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* gnu/packages/statistics.scm (r-r-rsp): New variable.
2016-01-07 17:18:17 +01:00
Eric Bavier