99caa6f75f
gnu: python-plastid: Update to 1.4.6.
...
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00
67f66812f5
gnu: Add python-termcolor.
...
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
2016-09-27 20:07:02 +10:00
f536dce522
gnu: python-pysam: Enable tests.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
2016-09-27 20:06:00 +10:00
dff26b2363
gnu: python-pysam: Delete bundled htslib.
...
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
2016-09-27 20:06:00 +10:00
397d463a12
gnu: python-pysam: Use 'modify-phases'.
...
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
2016-09-27 20:06:00 +10:00
bdc7be59eb
gnu: Add bcftools.
...
* gnu/packages/bioinformatics.scm (bcftools): New variable.
2016-09-27 20:06:00 +10:00
e301bfc886
gnu: python2-pbcore: Update to 1.2.10.
...
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
2016-09-27 20:06:00 +10:00
c2efe1aea8
gnu: Add python-pyxb.
...
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
2016-09-27 20:06:00 +10:00
fd49eb213f
gnu: python-pysam: Update to 0.9.1.4.
...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
2016-09-27 20:05:57 +10:00
3c185b24f5
Add missing exports.
...
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html >.
* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
2016-09-27 11:22:56 +02:00
9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
...
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
2016-09-26 17:09:08 -04:00
8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
...
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
2016-09-26 17:09:05 -04:00
58478cc1cb
gnu: libftdi: Propagate the libusb input.
...
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-26 14:30:37 -04:00
675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
2016-09-26 14:30:59 +02:00
bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2.
...
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
2016-09-26 14:30:59 +02:00
5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5.
...
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2016-09-26 14:30:58 +02:00
2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1.
...
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
2016-09-26 14:30:58 +02:00
8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3.
...
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
2016-09-26 14:30:58 +02:00
ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1.
...
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
2016-09-26 14:30:58 +02:00
1da48e4302
gnu: ghc-tagsoup: Update to 0.14.
...
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
2016-09-26 14:30:58 +02:00
1a545a1e7c
gnu: tbb: Fail on test errors.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
2016-09-26 14:30:58 +02:00
ba4529c4f7
gnu: ghc-tls: Update to 1.3.8.
...
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
2016-09-26 14:30:57 +02:00
7f5ca399bf
gnu: tbb: Use modify-phases syntax.
...
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
2016-09-26 14:30:57 +02:00
af8de20386
gnu: vsearch: Update to 2.1.1.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
2016-09-26 20:35:32 +10:00
204adc3017
gnu: azr3: Fix libsigc++ build errors.
...
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-26 10:47:58 +02:00
3ef08dceb3
gnu: qtractor: Update to 0.7.9.
...
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
...
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
New variable.
2016-09-26 07:47:55 +02:00
684f29bd2e
gnu: Add r-grohmm.
...
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
7f903d7300
gnu: Add r-systempiper.
...
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
cb99d457f0
gnu: Add r-shortread.
...
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
89f40c5e4e
gnu: Add r-gostats.
...
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
1a1931f7e0
gnu: Add r-category.
...
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
ad740ff818
gnu: Add r-gseabase.
...
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
cd9e7dc7ff
gnu: Add r-rbgl.
...
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
e816377374
gnu: Add r-annotationforge.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
9e330278ee
gnu: Add r-batchjobs.
...
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
dc4fb16d25
gnu: Add r-fail.
...
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
cd26ec3bbf
gnu: Add r-bbmisc.
...
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
929d4aaea1
gnu: Add r-checkmate.
...
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
0d90462fa3
gnu: Add r-backports.
...
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
8e1bfc7e8c
gnu: Add r-sendmailr.
...
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
0c77fd50f8
gnu: Add r-pheatmap.
...
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
092197a548
gnu: Add r-matrix.
...
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
ad34f0ac96
gnu: Add r-deseq2.
...
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
2301fd3e4d
gnu: Add r-genefilter.
...
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
2d21d44dbd
gnu: Add r-hmisc.
...
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
07a664cde0
gnu: Add r-geneplotter.
...
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
2016-09-26 03:21:07 +02:00
8c6de58849
gnu: Add r-annotate.
...
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2016-09-26 03:20:59 +02:00
2213730c5b
gnu: Add r-rpart.
...
* gnu/packages/statistics.scm (r-rpart): New variable.
2016-09-26 03:20:52 +02:00
356c6d61a6
gnu: Add r-rjson.
...
* gnu/packages/web.scm (r-rjson): New variable.
2016-09-26 03:20:44 +02:00
bbed0ab6b4
gnu: Add r-hwriter.
...
* gnu/packages/web.scm (r-hwriter): New variable.
2016-09-26 03:20:19 +02:00
57a31efb4b
gnu: tcc: Disable build on MIPS.
...
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
2016-09-26 03:01:06 +02:00
9311722703
gnu: Add optipng.
...
* gnu/packages/image.scm (optipng): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-25 16:53:00 -04:00
217f3fdfe6
gnu: openldap: Use gnutls.
...
* gnu/packages/openldap.scm (openldap)[inputs]: Switch to gnutls.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-25 22:25:02 +03:00
5babe521c8
system: Don't emit a GRUB 'search' command when passed a GRUB file name.
...
Reported by Tomáš Čech <tcech@suse.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26 >.
* gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE
is a string that does not denote an absolute file name.
2016-09-26 00:18:39 +09:00
7acd71d13d
gnu: epiphany: Drop NSS and libwnck.
...
These dependencies were dropped in Epiphany 3.21.x.
* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
2016-09-25 13:04:00 +02:00
9f58932ecc
gnu: epiphany: Update to 3.22.0.
...
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
2016-09-25 13:04:00 +02:00
58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3.
...
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
2016-09-25 13:04:00 +02:00
1535c0a6b6
gnu: linux-libre: Update to 4.7.5.
...
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
2016-09-25 03:57:57 -04:00
dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
2016-09-25 03:55:37 -04:00
94c5dc8c03
gnu: Add pam-krb5
...
* gnu/packages/admin.scm (pam-krb5): New variable.
2016-09-25 06:40:29 +02:00
9f2989b6cc
gnu: perl: Split configure phase.
...
* gnu/packages/perl.scm (perl)[arguments]: Split 'configure' phase into
'setup-configure' and 'configure' phases.
2016-09-25 10:09:00 +10:00
a8f3d49280
gnu: privoxy: Update to 3.0.26.
...
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
2016-09-24 23:09:14 +03:00
0ab57b0d04
gnu: tor: Update to 0.2.8.8.
...
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
2016-09-24 22:27:16 +03:00
0f65f54ebd
system: grub.cfg uses correct file names when store is not in root partition.
...
Fixes <http://bugs.gnu.org/24346 >.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).
* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-24 17:48:13 +09:00
d7b342d815
system: 'read-boot-parameters' reads the 'initrd' parameter.
...
* gnu/system.scm (<boot-parameters>)[initrd]: New field.
(read-boot-parameters): Read the 'initrd' element and fill in the
'initrd' field of the result.
2016-09-24 17:48:12 +09:00
b5b5105c3d
gnu: xorg-server: Set default font path to empty.
...
* gnu/packages/xorg.scm (xorg-server)[arguments]: Pass
"--with-default-font-path=" to #:configure-flags.
2016-09-24 14:28:09 +08:00
6fc48c2ee2
gnu: Add gforth.
...
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-24 14:07:12 +08:00
54021cd8c6
gnu: Add gnome-calculator.
...
* gnu/packages/gnome.scm (gnome-calculator): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-24 00:51:52 -04:00
8058880017
gnu: Add cmark.
...
* gnu/packages/markdown.scm (cmark): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 20:56:51 -04:00
93666cf783
gnu: Add enet.
...
* gnu/packages/networking.scm (enet): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:18:10 -04:00
03ddad84ba
gnu: flashrom: Update to 0.9.9
...
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:03:19 -04:00
0f5de84e98
gnu: Add nickle.
...
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 18:54:24 -04:00
047cd01d11
gnu: orpheus: Use 'modify-phases'.
...
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
2016-09-23 17:38:25 +03:00
5bd6270211
gnu: orpheus: Fix build on mips64el.
...
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
2016-09-23 17:38:24 +03:00
236d522b80
gnu: giac-xcas: Update to 1.2.2-81.
...
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 09:57:20 -04:00
8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable.
...
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
2016-09-23 13:13:41 +02:00
646a84338d
gnu: sra-tools: Update to 2.7.0.
...
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
2016-09-23 11:46:53 +02:00
40974c933e
gnu: ncbi-vdb: Update to 2.7.0.
...
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
2016-09-23 11:46:26 +02:00
48b419ebd6
gnu: ngs-sdk: Update to 1.2.5.
...
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
2016-09-23 11:45:24 +02:00
4781820147
gnu: randomjungle: Only build on x86_64 and i686.
...
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
fc3b2cbb04
gnu: retroarch: Update to 1.3.6.
...
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
2016-09-23 09:02:03 +03:00
5989d4eaac
gnu: synfig: Fix isnan error.
...
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
2016-09-23 07:45:16 +02:00
56f33f3fd5
gnu: ccache: Upgrade to 3.3.1.
...
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
2016-09-22 23:56:17 -05:00
bd368c7174
gnu: ccache: Use modify-phases.
...
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
2016-09-22 23:43:20 -05:00
1a0ae573c7
gnu: boost: Add -j for build.
...
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
2016-09-22 22:34:04 -05:00
6941965526
gnu: boost: Upgrade to 1.61.0.
...
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
2016-09-22 22:33:37 -05:00
71b611bc34
gnu: Add ghc-transformers-0.4.2.0.
...
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:01 -04:00
10a03d6665
gnu: Add ghc-system-fileio.
...
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
23feb6e4fb
gnu: Add ghc-system-filepath.
...
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
58c85b1f82
gnu: Add ghc-options.
...
* gnu/packages/haskell.scm (ghc-options): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
c92d944c1e
gnu: Add ghc-chell-quickcheck.
...
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
475d366866
gnu: Add ghc-chell-quickcheck-bootstrap.
...
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
8ea94489fd
gnu: Add ghc-chell.
...
* gnu/packages/haskell.scm (ghc-chell): New variables.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
7e06c4aa98
gnu: Add ghc-options-bootstrap.
...
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
25b3bdb5ff
gnu: Add ghc-shelly.
...
* gnu/packages/haskell.scm (ghc-shelly): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap.
...
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap.
...
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
2b41f4afc1
gnu: Add ghc-lifted-async.
...
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
6aab9ba6d4
gnu: Add ghc-constraints.
...
* gnu/packages/haskell.scm (ghc-constraints): New variable.
2016-09-22 20:09:58 -04:00
e7e2f03c8f
gnu: Add ghc-array.
...
* gnu/packages/haskell.scm (ghc-array): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
3db882776b
gnu: Add ghc-graphviz.
...
* gnu/packages/haskell.scm (ghc-graphviz): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
d4cca6b0ae
gnu: Add ghc-fgl-arbitrary.
...
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0.
...
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
6e0741f739
gnu: Add ghc-wl-pprint-text.
...
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
3b281f5b8d
gnu: Add ghc-process.
...
* gnu/packages/haskell.scm (ghc-process): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
4fec5cdbf4
gnu: Add ghc-directory.
...
* gnu/packages/haskell.scm (ghc-directory): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
e1a56bb258
gnu: Add ghc-colour.
...
* gnu/packages/haskell.scm (ghc-colour): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
1d9db656c9
gnu: Add ghc-bytestring.
...
* gnu/packages/haskell.scm (ghc-bytestring): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
41167bd255
gnu: Add ghc-monads-tf.
...
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
d52ca22ac3
gnu: Add ghc-patience.
...
* gnu/packages/haskell.scm (ghc-patience): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
027b79762a
gnu: Add ghc-findbin.
...
* gnu/packages/haskell.scm (ghc-findbin): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
54c37341d1
gnu: Add ghc-transformers.
...
* gnu/packages/haskell.scm (ghc-transformers): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
f827033102
gnu: Add ghc-tar.
...
* gnu/packages/haskell.scm (ghc-tar): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
a71f861752
gnu: Add ghc-bytestring-handle.
...
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
e9e519be76
gnu: Add ghc-sandi.
...
* gnu/packages/haskell.scm (ghc-sandi): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ab12bd3a04
gnu: Add ghc-tasty-th.
...
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa.
...
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
7e444dba6e
gnu: Add ghc-regex-tdfa.
...
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
d58dc851f9
gnu: Add ghc-regex-applicative.
...
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
1a0dbf0ded
gnu: Add ghc-haskeline.
...
* gnu/packages/haskell.scm (ghc-haskeline): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
7c14128dd0
gnu: Add ghc-data-ordlist.
...
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
c763b8ae89
gnu: Add ghc-cryptohash.
...
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
eddc69241b
gnu: ghc-cryptonite: Update to 0.19.
...
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
301e762ad1
gnu: Add ghc-binary.
...
* gnu/packages/haskell.scm (ghc-binary): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
cc5e16a764
gnu: Add ghc-base16-bytestring.
...
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10.
...
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
2016-09-22 20:09:51 -04:00
5895f193c9
gnu: reptyr: Remove mips64el support.
...
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
2016-09-22 22:42:47 +03:00
cda5e76f51
gnu: python2-django: Fix typo in native-inputs.
...
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
2016-09-22 22:42:47 +03:00
7adc698f69
gnu: python-fake-factory: Update to 0.7.2.
...
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
2016-09-22 22:42:46 +03:00
0dbb7ac2df
gnu: plink: Set endian-ness on more architectures.
...
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-09-22 22:42:37 +03:00
c788c5feb1
gnu: Add ytalk
...
* gnu/packages/messaging.scm (ytalk): New variable.
2016-09-22 21:07:33 +02:00
163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes].
...
Fixes CVE-2016-{6304,6305,6307,6308}.
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
2016-09-22 13:45:54 -04:00
50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes].
...
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
2016-09-22 13:45:54 -04:00
62d00095c2
gnu: prank: Allow building on 32-bit machines.
...
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
2016-09-22 19:21:16 +03:00
a143e1b877
gnu: webkitgtk: Update to 2.14.0.
...
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
2016-09-22 11:59:58 -04:00
b8367c0090
gnu: offlineimap: Update to 7.0.7.
...
* gnu/packages/mail.scm (offlineimap): Update to 7.0.7.
2016-09-22 11:19:11 +03:00
951da521a9
gnu: diamond: Update to 0.8.22.
...
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.22.
2016-09-22 16:36:00 +10:00
c5776c87bb
gnu: perl-io-socket-ssl: Update to 2.038.
...
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.038.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 01:44:50 -04:00
1df00601b2
gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}].
...
* gnu/packages/irc.scm (irssi): Update to 0.8.20.
2016-09-22 00:38:13 -04:00
39162ee49b
gnu: extempore: Only build on x86_64.
...
* gnu/packages/algebra.scm (kiss-fft-for-extempore)[supported-systems]:
Only build on x86_64.
* gnu/packages/gl.scm (nanovg-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/image.scm (stb-image-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/llvm.scm (llvm-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/music.scm (portmidi-for-extempore)[supported-systems]:
Likewise.
(extempore)[supported-systems]: Likewise.
2016-09-21 21:47:56 +02:00
b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted.
...
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
3f1c722ec7
gnu: r-htmltools: Ensure temporary files can be deleted.
...
* gnu/packages/web.scm (r-htmltools)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
538c0e3b69
gnu: openlibm: Remove support for mips.
...
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
6e8faf7794
gnu: jellyfish: Limit to x86_64.
...
* gnu/packages/bioinformatics.scm (jellyfish)[supported-systems}: New
field, limit support to x86_64.
2016-09-21 22:36:52 +03:00
f7fe5f7a3e
gnu: femtolisp: Remove custom "patch-makefile" phase.
...
* gnu/packages/lisp.scm (femtolisp)[arguments]: Remove
"patch-makefile" phase; specify test target; build "release"
target instead of "default".
2016-09-21 21:28:52 +02:00
171091a874
gnu: lm-sensors: Update to 3.4.0.
...
* gnu/packages/linux.scm (lm-sensors): Update to 3.4.0.
2016-09-21 19:20:22 +02:00
79558df220
gnu: vsearch: Update to 2.1.0.
...
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.0.
2016-09-21 18:44:22 +10:00
375f224b68
gnu: python-click: Use 'pypi-uri'.
...
* gnu/packages/python.scm (python-click, python2-click)[source]: Use
'pypi-uri'.
2016-09-21 11:58:39 +10:00
e2ab5a0904
gnu: python-click: Hardlink path to 'locale'.
...
* gnu/packages/python.scm (python-click, python2-click)[arguments]: New
field.
2016-09-21 11:54:15 +10:00
f75bb2c3f2
gnu: simple-scan: Update to 3.22.0.1.
...
* gnu/packages/gnome.scm (simple-scan): Update to 3.22.0.1.
2016-09-21 01:15:57 +02:00
8824da4c8b
gnu: vlc: Use liba52.
...
* gnu/packages/video.scm (vlc)[inputs]: Add liba52.
[arguments]: Remove "--disable-a52" from #:configure-flags.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 15:54:18 -04:00
c84253f757
gnu: chez-scheme: Remove arm support.
...
* gnu/packages/scheme.scm (chez-scheme)[supported-systems]: Remove arm.
2016-09-20 22:04:15 +03:00
22037a327a
gnu: awesome: Update to 3.5.9.
...
* gnu/packages/wm.scm (awesome): Update to 3.5.9.
[inputs]: Add gobject-introspection, lua-lgi, cairo. Use latest available lua.
[arguments]: Set lua search paths. Add cairo to LD_LIBRARY_PATH. Wrap binary in
respect to those paths plus GI_TYPELIB_PATH.
2016-09-20 14:58:33 -04:00
03d8505f14
gnu: lua: Add lua-lgi.
...
* gnu/packages/lua.scm (lua-lgi): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:32 -04:00
c0d47cadea
gnu: lua: Use MYCFLAGS instead of CFLAGS.
...
* gnu/packages/lua.scm (lua)[arguments]: Use MYCFLAGS instead of
CFLAGS and remove conflicting -DLUA_USE_POSIX since -DLUA_USE_LINUX
is passed implicitly for build target "linux".
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:29 -04:00
e6d58734b6
gnu: chess: Update to 6.2.3.
...
* gnu/packages/games.scm (chess): Update to 6.2.3.
2016-09-20 21:41:14 +03:00
b04a52a6ff
gnu: Add python-requests-oauthlib.
...
* gnu/packages/python.scm (python-requests-oauthlib,
python2-requests-oauthlib): New variables.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-20 21:27:56 +03:00
be86b7adbc
gnu: Add bind
...
* gnu/packags/dns.scm (bind): New variable, (bind-utils): Remove.
2016-09-20 18:55:52 +02:00
e465d9e190
ui: Do not shadow '_' where it's used as a literal syntax match.
...
Fixes compilation with Guile 2.1.
Reported by Mu Lei.
* guix/ui.scm (report-load-error)
(warn-about-load-error, read/eval-package-expression): Use 'rest'
instead of '_' as the pattern variable name.
* gnu/packages.scm (%find-package): Likewise.
* guix/scripts/build.scm (transform-package-inputs): Likewise.
* guix/scripts/hash.scm (guix-hash): Likewise.
* guix/scripts/import/gnu.scm (%options, guix-import-gnu): Likewise.
* guix/scripts/import/nix.scm (guix-import-nix): Likewise.
* guix/scripts/offload.scm (build-machines): Likewise.
* guix/scripts/refresh.scm (%options): Likewise.
* guix/scripts/substitute.scm (narinfo-signature->canonical-sexp):
Likewise.
2016-09-20 23:22:42 +09:00
232ccbefc0
services: Use 'source-module-closure' for (gnu build activation).
...
* gnu/services.scm (activation-script)[%modules]: Remove.
Use 'source-module-closure' instead.
2016-09-20 22:42:11 +09:00
92330ba90d
gnu: efl: Remove hardcoding pulseaudio and libsndfile.
...
* gnu/packages/enlightenment.scm (efl)[arguments]: Remove custom phase
to hardlink to the locations of pulseaudio and libsndfile.
2016-09-20 11:32:08 +03:00
846b2534df
gnu: emacs: Update to 25.1.
...
* gnu/packages/emacs.scm (emacs): Update to 25.1.
2016-09-19 23:45:25 -04:00
6509a1e1e0
gnu: linux-libre: Update to 4.7.4.
...
* gnu/packages/linux.scm (linux-libre)
(%linux-libre-version, %linux-libre-hash): Update to 4.7.4.
2016-09-19 18:42:29 -04:00
a8b9c575aa
gnu: linux-libre@4.4: Update to 4.4.21.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.21.
2016-09-19 18:40:59 -04:00
55ac38f986
gnu: linux-libre@4.1: Update to 4.1.33.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.33.
2016-09-19 18:37:22 -04:00
006a832ccb
gnu: emacs-org: Update to 20160912.
...
* gnu/packages/emacs.scm (emacs-org): Update to 20160912.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-19 23:35:48 +03:00
8120205ccd
gnu: python2-cov-core: Use strip-python2-variant.
...
* gnu/packages/python.scm (python-cov-core)[properties]: New field,
declare python2-variant.
(python2-cov-core): Use strip-python2-variant.
2016-09-19 23:25:01 +03:00
d404a6f971
gnu: gnupg: Fix test failure.
...
* gnu/packages/patches/gnupg-fix-expired-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg): Use it.
2016-09-19 16:09:56 -04:00
dfdaea32e9
gnu: python-django, python2-django: Fix propagated- and native-inputs.
...
setuptools is a run-time dependency (sic!), all others are required
for testing only.
* gnu/packages/django.scm (python-django) [propagated-inputs,
native-inputs]: Exchange them. Move tzdata to new native-inputs.
Enhance comments.
(python2-django) [propagated-inputs] change into native-inputs.
Enhance comment.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-19 23:41:23 +09:00
4a84a48742
services: console-font: A single service handles all the VTs.
...
* gnu/services/base.scm (%default-console-font): New variable.
(console-font-shepherd-services): New procedure.
(console-font-service-type): Change to use 'service-type'.
(console-font-service): Rewrite using 'simple-service'.
(%base-services): Use a single CONSOLE-FONT-SERVICE-TYPE instance.
* gnu/system/install.scm (installation-services): Likewise.
2016-09-19 23:36:17 +09:00
71654dfdda
services: Add 'simple-service'.
...
* gnu/services.scm (simple-service): New procedure.
* doc/guix.texi (Service Reference): Document it.
2016-09-19 23:11:19 +09:00
bf307a7a54
gnu: efl: Add recommended build flags.
...
* gnu/packages/enlightenment.scm (efl)[inputs]: Add libwebp.
[arguments]: Add configure-flags to enable xinput22, image-loader-webp,
multisense, opengl with egl support.
2016-09-19 15:46:34 +03:00
5de2a99e79
gnu: efl: Update to 1.18.1.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.18.1.
2016-09-19 15:46:33 +03:00
6f27fbd807
gnu: ffmpeg@2.8: Update to 2.8.8.
...
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.8.
2016-09-19 15:46:26 +03:00
6b87c10f58
gnu: Add Mr. Rescue.
...
* gnu/packages/games.scm (mrrescue): New variable.
2016-09-19 19:24:18 +08:00
eb24341ffb
gnu: Add r-biocinstaller.
...
* gnu/packages/bioinformatics.scm (r-biocinstaller): New variable.
2016-09-19 11:56:44 +02:00
c2c84add54
gnu: racket: Update to 6.6
...
* gnu/packages/scheme.scm (racket): Update to 6.6.
2016-09-19 11:53:30 +02:00
de96ea286d
gnu: python-biom-format: Move inputs to propagated-inputs.
...
* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format)
[inputs]: Move all from here ...
[propagated-inputs]: ... to here.
2016-09-19 15:44:20 +10:00
7bba95b769
gnu: seqmagick: Use BioPython 1.66.
...
* gnu/packages/bioinformatics.scm (seqmagick)[inputs]: Use
python2-biopython-1.66 instead of python2-biopython.
2016-09-19 15:44:20 +10:00
4b1a152826
gnu: Add python2-biopython-1.66.
...
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
2016-09-19 15:44:20 +10:00
8c8da1389e
gnu: python-biopython: Use 'python2-variant'.
...
* gnu/packages/bioinformatics.scm (python-biopython)[properties]: New field.
[native-inputs]: Remove field.
(python-biopython): Use 'strip-python-variant'.
2016-09-19 15:44:20 +10:00
4ce6030588
gnu: python-biopython: Update to 1.68.
...
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.68.
[arguments]: New field.
2016-09-19 15:44:18 +10:00
ded5d02bd0
gnu: wireshark: Update to 2.2.0.
...
* gnu/packages/networking.scm (wireshark): Update to 2.2.0.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-18 21:03:48 -04:00
c4605e4c97
gnu: onionshare: Fix build.
...
This commit is a follow-up to b8ea5204ab
2016-09-18 23:27:36 +03:00
b8ea5204ab
gnu: Add onionshare.
...
* gnu/packages/tor.scm (onionshare): New variable.
* gnu/packages/patches/onionshare-fix-install-paths.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-18 23:19:46 +03:00
d488d5d65b
gnu: Add python-nautilus.
...
* gnu/packages/python.scm (python-nautilus): New variable.
2016-09-18 23:19:46 +03:00
153e58c568
gnu: Add python-bcrypt.
...
* gnu/packages/password-utils.scm (python-bcrypt): New variable.
2016-09-18 23:19:46 +03:00
0aea283a65
gnu: Add python-nose2.
...
* gnu/packages/python.scm (python-nose2): New variable.
2016-09-18 23:19:45 +03:00
12f839fdf6
gnu: Add python-cov-core.
...
* gnu/packages/python.scm (python-cov-core): New variable.
2016-09-18 23:19:45 +03:00
257023978a
gnu: Add python-consul.
...
* gnu/packages/python.scm (python-consul): New variable.
2016-09-18 23:19:45 +03:00
ddc63a5611
gnu: Add python-graphene.
...
* gnu/packages/python.scm (python-graphene): New variable.
2016-09-18 23:19:45 +03:00
894810c7c9
gnu: Add python-django-filter.
...
* gnu/packages/django.scm (python-django-filter): New variable.
2016-09-18 23:19:45 +03:00
23b563dcfd
gnu: Add python-pytest-django.
...
* gnu/packages/django.scm (python-pytest-django): New variable.
2016-09-18 23:19:45 +03:00
de2966cfe8
gnu: Add python-sqlalchemy-utils.
...
* gnu/packages/python.scm (python-sqlalchemy-utils): New variable.
2016-09-18 23:19:45 +03:00
7ee5157579
gnu: Add python-graphql-relay.
...
* gnu/packages/python.scm (python-graphql-relay): New variable.
2016-09-18 23:19:44 +03:00
05b7a59336
gnu: Add python-graphql-core.
...
* gnu/packages/python.scm (python-graphql-core): New variable.
2016-09-18 23:19:44 +03:00
44547e5153
gnu: Add python-pytest-mock.
...
* gnu/packages/python.scm (python-pytest-mock): New variable.
2016-09-18 23:19:44 +03:00
5cb2fe446b
gnu: Add python-promise.
...
* gnu/packages/python.scm (python-promise): New variable.
2016-09-18 23:19:44 +03:00
4d98bfaf23
gnu: Add python-peewee.
...
* gnu/packages/databases.scm (python-peewee): New variable.
2016-09-18 23:19:44 +03:00
Ben J Woodcroft