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38677 Commits

Author SHA1 Message Date
Christopher Baines 24a23bea20
gnu: Add python-miniboa. 
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
 2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1. 
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
 2019-01-13 17:09:52 +00:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran. 
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
 2019-01-13 13:04:18 +01:00
Efraim Flashner d691e96657
gnu: conda: Use 'invoke'. 
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner 675e7bba3e
gnu: python-conda: All phases return #t. 
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner e227f248a6
gnu: python-conda: Fix test suite. 
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
 2019-01-13 12:44:00 +02:00
Ricardo Wurmus 82acd43cbd
gnu: Add r-raster. 
* gnu/packages/cran.scm (r-raster): New variable.
 2019-01-13 11:14:44 +01:00
Ricardo Wurmus 104e7c3c92
gnu: r-ggformula: Update to 0.9.1. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 3fe45dda0a
gnu: r-tibble: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 523762e332
gnu: r-psych: Update to 1.8.12. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
 2019-01-13 11:14:43 +01:00
Efraim Flashner d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux. 
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
 2019-01-13 11:31:04 +02:00
Rutger Helling 15d2cebf45
gnu: wine-staging: Update to 4.0-rc6. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
 2019-01-13 10:14:49 +01:00
Ricardo Wurmus c8d8925647
gnu: Sort package module references in (gnu packages graphviz). 
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus 8b1c0dab45
gnu: Add python-pygraphviz. 
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus 9e7f55de45
gnu: Add python-doctest-ignore-unicode. 
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
 2019-01-13 10:07:06 +01:00
Ricardo Wurmus c016e390bf
gnu: Add graphviz-2.38. 
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
 2019-01-13 10:07:06 +01:00
Marius Bakke 1710ffa4c7
gnu: sudo: Update to 1.8.27. 
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
 2019-01-13 01:25:18 +01:00
Marius Bakke cb3e055f86
gnu: libassuan: Update to 2.5.2. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
 2019-01-13 01:25:17 +01:00
Marius Bakke 66470a5ad0
gnu: libgxps: Update to 0.3.1. 
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
 2019-01-13 01:25:17 +01:00
Marius Bakke ad55c19211
gnu: libqmi: Update to 1.22.0. 
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke de261ace27
gnu: libmbim: Update to 1.18.0. 
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke 8bcae1e60c
gnu: libsodium: Update to 1.0.17. 
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
 2019-01-13 01:25:17 +01:00
Marius Bakke 0b014776c9
gnu: exempi: Update to 2.5.0. 
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke 00262db23a
gnu: seabios: Update to 1.12.0. 
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
 2019-01-13 01:25:17 +01:00
Marius Bakke b2e765de4c
gnu: httpd: Update to 2.4.37. 
* gnu/packages/web.scm (httpd): Update to 2.4.37.
 2019-01-13 01:25:17 +01:00
Marius Bakke 1d7fbe0947
gnu: nasm: Update license. 
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
 2019-01-13 01:25:16 +01:00
Marius Bakke 80459f5a21
gnu: nasm: Update home page. 
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
 2019-01-13 01:25:16 +01:00
Marius Bakke 9f1448b74a
gnu: libgphoto2: Update to 2.5.22. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
 2019-01-13 01:25:16 +01:00
Marius Bakke ef61969c52
gnu: re2: Update to 2019-01-01. 
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
 2019-01-13 01:25:16 +01:00
Marius Bakke c06ef010e3
gnu: libsecret: Update to 0.18.7. 
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL.  Add GETTEXT-MINIMAL.
 2019-01-13 01:25:16 +01:00
Marius Bakke 48d5818a0e
gnu: fluidsynth: Update to 2.0.3. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
 2019-01-13 01:25:16 +01:00
Marius Bakke bf135622bd
gnu: rofi: Update to 1.5.2. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
 2019-01-13 01:25:16 +01:00
Marius Bakke 2bb187c484
gnu: xscreensaver: Update to 5.42. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
 2019-01-13 01:25:16 +01:00
Marius Bakke 0c4cee13b2
gnu: libcmis: Update to 0.5.2. 
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases.  Don't pass "--disable-werror" in #:configure-flags.
 2019-01-13 01:25:15 +01:00
Marius Bakke 48a51af9d2
gnu: http-parser: Update to 2.9.0. 
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
 2019-01-13 01:25:15 +01:00
Marius Bakke 304db09257
gnu: http-parser: Download from git. 
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
 2019-01-13 01:25:15 +01:00
Marius Bakke 9c2094785d
gnu: libetonyek: Adjust inputs. 
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
 2019-01-13 01:25:15 +01:00
Marius Bakke 7c3acfcb69
gnu: libetonyek: Update to 0.1.9. 
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
 2019-01-13 01:25:15 +01:00
Marius Bakke b1d2e0b4e0
gnu: libcdr: Update to 0.1.5. 
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
 2019-01-13 01:25:15 +01:00
Kei Kebreau 5b9c2690af
gnu: tintin++: Update to 2.01.5. 
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
 2019-01-12 18:37:38 -05:00
Ricardo Wurmus c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1. 
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus c86fc96987
gnu: r-inspect: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene. 
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus cad6fb2dec
gnu: Add r-plgem. 
* gnu/packages/bioconductor.scm (r-plgem): New variable.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 45dcd7dcfd
gnu: r-rots: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 0b469ee225
gnu: r-glimma: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
 2019-01-12 23:35:19 +01:00
Ricardo Wurmus 7f2b1c4af0
gnu: r-goseq: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
 2019-01-12 23:35:18 +01:00
Ricardo Wurmus add2b19561
gnu: r-chippeakanno: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
 2019-01-12 23:35:18 +01:00