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Author SHA1 Message Date
Ricardo Wurmus 71d2f03be3
gnu: r-digest: Update to 0.6.15. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.15.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus ff1197c86e
gnu: r-rpart: Update to 4.1-12. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-12.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 6aa4be9c3c
gnu: r-mgcv: Update to 1.8-23. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-23.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus 4c9264c1b9
gnu: r-mass: Update to 7.3-48. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-48.
 2018-02-13 16:18:43 +01:00
Ricardo Wurmus e30b878ec8
gnu: r-hexbin: Update to 1.27.2. 
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.2.
 2018-02-13 16:18:41 +01:00
Mark H Weaver a102d359a6
Merge branch 'master' into core-updates 2018-01-23 17:01:07 -05:00
Ricardo Wurmus 5f1bb222c9
gnu: Add r-catterplots. 
* gnu/packages/statistics.scm (r-catterplots): New variable.
 2018-01-21 14:18:09 +01:00
Efraim Flashner 23de2e1d5f
Merge remote-tracking branch 'origin/master' into core-updates 2017-12-31 14:10:25 +02:00
Tobias Geerinckx-Rice e9960d8cba
gnu, doc: Use HTTPS for cran.r-project.org home pages. 
* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
 2017-12-24 16:12:13 +01:00
Leo Famulari f76fc96866
Merge branch 'master' into core-updates 2017-12-21 13:58:35 -05:00
Ricardo Wurmus aead9e1bc5
gnu: r-testthat: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
 2017-12-19 20:35:08 +01:00
Ricardo Wurmus f9f1291bc0
gnu: r-ade4: Update to 1.7-10. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 83b0e1d53f
gnu: r-registry: Update to 0.5. 
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus d2dc69b8be
gnu: r-iterators: Update to 1.0.9. 
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
 2017-12-19 20:35:07 +01:00
Ricardo Wurmus 4a1945da16
gnu: r-segmented: Update to 0.5-3.0. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 0300cacae1
gnu: r-plotrix: Update to 3.7. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 004e108aad
gnu: r-git2r: Update to 0.20.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
 2017-12-19 20:35:06 +01:00
Ricardo Wurmus 069e3b5c09
gnu: r-backports: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus 1028f9ef11
gnu: r-yaml: Update to 2.1.16. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus de3fd9253f
gnu: r-reshape2: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
 2017-12-19 20:35:05 +01:00
Ricardo Wurmus d0c1a402db
gnu: r-digest: Update to 0.6.13. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
 2017-12-19 20:35:05 +01:00
Roel Janssen 28fc96cb1e
gnu: Update r-cowplot to 0.9.2. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
 2017-12-19 10:47:19 +01:00
Marius Bakke 32cd878be0
Merge branch 'master' into core-updates 2017-12-19 01:42:40 +01:00
Tobias Geerinckx-Rice 6bc862c100
gnu: r-foreach: Update to 1.4.4. 
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.4
 2017-12-15 16:44:26 +01:00
Tobias Geerinckx-Rice a135b3ddfe
gnu: r-caret: Update to 6.0-78. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-78
 2017-12-14 00:18:16 +01:00
Tobias Geerinckx-Rice 5ac4bd9c0a
gnu: r-domc: Update to 1.3.5. 
* gnu/packages/statistics.scm (r-domc): Update to 1.3.5
 2017-12-14 00:18:15 +01:00
Christopher Baines 9cf5f134d5
gnu: Switch to using the version-major procedure. 
* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
  (hmmer)[source]: Switch to using version-major.
  (pidgin)[native-search-paths]: Switch to using version-major.
  (r-minimal)[source]: Switch to using version-major.
 2017-12-11 19:12:33 +00:00
Marius Bakke 77181815ae
Merge branch 'master' into core-updates 2017-12-05 23:41:30 +01:00
Ricardo Wurmus f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31. 
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus b50a4b1391
gnu: r-cowplot: Update to 0.9.1. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
 2017-11-30 17:28:27 +01:00
Ricardo Wurmus a3ae2fa537
gnu: r-rcppprogress: Update to 0.4. 
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus 0382d37734
gnu: r-rmarkdown: Update to 1.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
 2017-11-30 17:28:26 +01:00
Ricardo Wurmus e35cac9581
gnu: r-batchjobs: Update to 1.7. 
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
 2017-11-30 17:28:25 +01:00
Ricardo Wurmus 87313f64d9
gnu: r-stringi: Update to 1.1.6. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
 2017-11-30 17:28:16 +01:00
Ricardo Wurmus 3e11bddcc7
gnu: r-devtools: Update to 1.13.4. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus 20b0f8a5ec
gnu: r-mclust: Update to 5.4. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
 2017-11-30 17:28:15 +01:00
Ricardo Wurmus 6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus a0a3184925
gnu: r-car: Update to 2.1-6. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
 2017-11-30 17:28:14 +01:00
Ricardo Wurmus c8fb593502
gnu: r-sn: Update to 1.5-1. 
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus b796f9e6be
gnu: r-openssl: Update to 0.9.9. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
 2017-11-30 17:28:13 +01:00
Ricardo Wurmus 09c0107f75
gnu: r-hms: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
 2017-11-30 17:28:12 +01:00
Roel Janssen 8937abefb2
gnu: Update r-matrix to 1.2-12. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
 2017-11-30 12:52:25 +01:00
Roel Janssen c71558ffed
gnu: Update r-cluster to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-11-30 12:51:54 +01:00
Roel Janssen cbe1314a7e
gnu: Update r-minimal to 3.4.3. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
 2017-11-30 12:50:23 +01:00
Marius Bakke 2dd12924cf
Merge branch 'master' into core-updates 2017-11-19 15:01:00 +01:00
Ricardo Wurmus 33dc54b08c
gnu: Move date/time packages from python.scm to time.scm. 
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
 2017-11-18 12:45:19 +01:00
Ricardo Wurmus 9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics). 
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
 2017-11-18 11:18:39 +01:00
Ricardo Wurmus ac257f127a
gnu: Move testing packages from python.scm to check.scm. 
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
 2017-11-17 22:36:26 +01:00
Kyle Meyer e99f045cc8
gnu: Add r-directlabels. 
* gnu/packages/statistics.scm (r-directlabels): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-11-09 23:54:48 +01:00
Ricardo Wurmus 2e648d2bc4
gnu: r-prabclus: Update description. 
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus 14e5f6b20a
gnu: r-fdrtool: Update description. 
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
 2017-11-07 23:32:46 +01:00
Ricardo Wurmus 60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
 2017-11-07 08:15:44 +01:00
Ricardo Wurmus 65a8cd6676
gnu: r-lubridate: Update to 1.7.1. 
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus 689edf1153
gnu: r-preprocesscore: Update to 1.40.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus e7f680f071
gnu: r-r-utils: Update to 2.6.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
 2017-11-07 08:15:41 +01:00
Ricardo Wurmus ecfe98a17a
gnu: r-openssl: Update to 0.9.8. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
 2017-11-07 08:15:40 +01:00
Ricardo Wurmus aced057fbc
gnu: r-rlang: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
 2017-11-07 08:15:40 +01:00
Leo Famulari f9c3bd2e01
gnu: Generalize the variable name of the test-only tzdata package. 
* gnu/packages/base.scm (tzdata-2017a): Rename variable to tzdata-for-tests.
* gnu/packages/calcurse.scm (calcurse)[native-inputs, arguments]: Adjust
accordingly.
gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Adjust accordingly and
add tzdata-for-tests #:disallowed-references.
* gnu/packages/statistics.scm (r-minimal): Adjust accordingly.
 2017-11-04 10:32:30 -04:00
Ricardo Wurmus a6ec5b7043
gnu: r-withr: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus fd9afcf4ea
gnu: r-quantreg: Update to 5.34. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fe75660c0
gnu: r-robustbase: Update to 0.92-8. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 1fb415cb50
gnu: r-purrr: Update to 0.2.4. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus c8818f5577
gnu: r-irlba: Update to 2.3.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
 2017-11-03 14:14:37 +01:00
Ricardo Wurmus 116e9837b5
gnu: r-checkmate: Update to 1.8.5. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus fde66e3018
gnu: r-multitaper: Update to 1.0-14. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus 0a123e0609
gnu: r-data-table: Update to 1.10.4-3. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus b5a2f37157
gnu: r-pryr: Update to 0.1.3 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
 2017-11-03 14:14:36 +01:00
Ricardo Wurmus 1f6f4c40c1
gnu: Add r-tgconfig. 
* gnu/packages/statistics.scm (r-tgconfig): New variable.
 2017-10-30 12:07:53 +01:00
Ricardo Wurmus 7941d1ed5d
gnu: Add r-tgstat. 
* gnu/packages/statistics.scm (r-tgstat): New variable.
 2017-10-30 12:07:51 +01:00
Efraim Flashner 8ba3f751b6
gnu: r-nloptr: Update package hash. 
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.

* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
 2017-10-26 10:46:02 +03:00
Kyle Meyer 4c77abc4da
gnu: Add r-forcats. 
* gnu/packages/statistics.scm (r-forcats): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2017-10-25 16:24:03 +02:00
Tobias Geerinckx-Rice 5713bbf157
Use HTTPS for bioconductor.org. 
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
 2017-10-21 17:43:40 +02:00
Ricardo Wurmus e059bdc9a7
gnu: r-tidyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus d8455fe146
gnu: r-tidyselect: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
 2017-10-17 20:58:24 +02:00
Ricardo Wurmus 711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus 767ad2f7ad
gnu: r-chron: Update to 2.3-51. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
 2017-10-17 20:58:23 +02:00
Ricardo Wurmus dc6cb56dec
gnu: r-dplyr: Update to 0.7.4. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
 2017-10-17 20:58:23 +02:00
Roel Janssen 6de897ac5a
gnu: Add r-ggdendro. 
* gnu/packages/statistics.scm (r-ggdendro): New variable.
 2017-10-11 10:02:08 +02:00
Ricardo Wurmus 6048986c89
gnu: r-lme4: Update to 1.1-14. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 26cd4194ef
gnu: r-doparallel: Update to 1.0.11. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 7147d8f7ad
gnu: r-checkmate: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
 2017-09-28 22:00:44 +02:00
Ricardo Wurmus 2c49184e2c
gnu: r-backports: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
 2017-09-28 22:00:43 +02:00
Ricardo Wurmus 1344deb937
gnu: r-minimal: Update to 3.4.2. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
 2017-09-28 20:21:18 +02:00
Ricardo Wurmus 91316f31d4
gnu: r-glmnet: Update to 2.0-13. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus d9400ee46a
gnu: r-segmented: Update to 0.5-2.2. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus 29457c43bf
gnu: r-mgcv: Update to 1.8-22. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
 2017-09-24 11:36:17 +02:00
Ricardo Wurmus 2c67f96b1b
gnu: r-glmnet: Update to 2.0-12. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus 0b2fc9836b
gnu: r-lambda-r: Update to 1.2. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
 2017-09-18 14:23:03 +02:00
Ricardo Wurmus 9f14fffea6
gnu: r-gridextra: Update to 2.3. 
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus 37c6a738f3
gnu: r-dplyr: Update to 0.7.3. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus b0c8cba485
gnu: r-crayon: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus ea008095c3
gnu: r-svglite: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus 7904531e5b
gnu: r-mgcv: Update to 1.8-21. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
 2017-09-18 14:23:02 +02:00
Ricardo Wurmus d9c65e5a9c
gnu: r-caret: Update to 6.0-77. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
 2017-09-18 11:33:26 +02:00
Ricardo Wurmus 9272144a88
gnu: r-rstudioapi: Update to 0.7. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
 2017-09-18 11:33:26 +02:00
Ricardo Wurmus 0dc3b4d41e
gnu: r-openssl: Update to 0.9.7. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
 2017-09-18 11:33:25 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
 2017-09-05 16:59:45 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
 2017-09-01 22:05:39 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect. 
* gnu/packages/statistics.scm (r-tidyselect): New variable.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus e3323e0707
gnu: r-commonmark: Update to 1.4. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 5d84369bda
gnu: r-ade4: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus fb10c923b3
gnu: r-tibble: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus edd5fd7208
gnu: r-rlang: Update to 0.1.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 5a00ef0950
gnu: r-knitr: Update to 1.17. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 3949aef601
gnu: r-bh: Update to 1.65.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus b93881b9c5
gnu: r-scales: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 2d99a31607
gnu: r-mgcv: Update to 1.8-19. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus fefe9f4753
gnu: r-matrix: Update to 1.2-11. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus caa4e796e4
gnu: Add r-dbplyr. 
* gnu/packages/statistics.scm (r-dbplyr): New variable.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus 174fbd5f3b
gnu: r-minimal: Remove timestamp from man page. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
 2017-08-28 15:51:05 +02:00
Efraim Flashner af9bb4cab8
gnu: pspp: Update to 1.0.1. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
 2017-08-28 14:44:41 +03:00
Ricardo Wurmus bd3a184613
gnu: r-minimal: Do not compress serialized files. 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
 2017-08-22 16:24:24 +02:00
Ricardo Wurmus 6be54a8751
gnu: Add rmath-standalone. 
* gnu/packages/statistics.scm (rmath-standalone): New variable.
 2017-08-22 16:24:24 +02:00
Efraim Flashner bda6c35093
gnu: pspp: Update to 1.0.0. 
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
 2017-08-20 21:44:47 +03:00
Ricardo Wurmus a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which". 
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
 2017-08-20 14:00:04 +02:00
Ricardo Wurmus 97cb349dc1
gnu: r-trimcluster: Update license. 
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
 2017-08-17 17:26:11 +02:00
Efraim Flashner adcb30642c
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-16 17:57:40 +03:00
Efraim Flashner 2d430f2923
Revert "gnu: pspp: Update to 0.11.0." 
This FTBFS on x86_64 and i686.

This reverts commit f4c808df5b.
 2017-08-15 10:03:40 +03:00
Efraim Flashner f4c808df5b
gnu: pspp: Update to 0.11.0. 
This fixes CVE-2017-10791, CVE-2017-10792.

* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
 2017-08-13 10:16:17 +03:00
Ricardo Wurmus c5f744a68d
gnu: Add r-robust. 
* gnu/packages/statistics.scm (r-robust): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 5d0afe8849
gnu: Add r-fit-models. 
* gnu/packages/statistics.scm (r-fit-models): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0bae5fd6a7
gnu: Add r-rrcov. 
* gnu/packages/statistics.scm (r-rrcov): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 23841b2573
gnu: Add r-pcapp. 
* gnu/packages/statistics.scm (r-pcapp): New variable.
 2017-08-09 20:08:13 +02:00
Ricardo Wurmus 0ecd065839
gnu: r-gdtools: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
 2017-08-09 20:08:12 +02:00
Ricardo Wurmus c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
 2017-08-09 20:08:12 +02:00
Ricardo Wurmus 1738138cb3
gnu: r-igraph: Move to (gnu packages graph). 
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
 2017-08-09 14:47:47 +02:00
Ricardo Wurmus 2267e4d3f6
gnu: r-purrr: Update to 0.2.3. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
 2017-08-03 17:53:55 +02:00
Ricardo Wurmus ceb802a31c
gnu: r-desc: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
 2017-08-03 17:53:55 +02:00
Ricardo Wurmus 85cd755417
gnu: r-tclust: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 6bb4bfa4bc
gnu: r-car: Update to 2.1-5. 
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
 2017-08-03 17:53:53 +02:00
Ricardo Wurmus 12c3bbb662
gnu: r-pbapply: Update to 1.3-3. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 4431dd3a4e
gnu: r-vgam: Update to 1.0-4. 
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 41692b2963
gnu: r-mclust: Update to 5.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 60869fb2f8
gnu: r-flexmix: Update to 2.3-14. 
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus 62d3afc3d6
gnu: r-fastica: Update to 1.2-1. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
 2017-08-03 17:53:52 +02:00
Ricardo Wurmus df03b6f90c
gnu: r-cowplot: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
 2017-08-03 17:53:51 +02:00
Ricardo Wurmus d58faa7f44
gnu: r-rann: Update to 2.5.1. 
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
 2017-08-03 17:53:51 +02:00
Ricardo Wurmus a8c2706de2
gnu: r-statmod: Update to 1.4.30. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
 2017-08-03 17:53:51 +02:00
Ricardo Wurmus 80d1185076
gnu: r-gdata: Update to 2.18.0. 
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
 2017-08-03 17:53:51 +02:00
Ricardo Wurmus 2c75199c56
gnu: r-sfsmisc: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
 2017-08-03 17:53:51 +02:00
Ricardo Wurmus 1d256438c8
gnu: r-googlesheets: Update to 0.2.2. 
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
 2017-08-03 17:53:50 +02:00
Ricardo Wurmus 9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
 2017-08-03 17:53:50 +02:00
Ricardo Wurmus e1cd25bc78
gnu: r-glmnet: Update to 2.0-10. 
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
 2017-08-03 17:53:50 +02:00
Ricardo Wurmus 1c576cbadb
gnu: r-irlba: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
 2017-08-03 17:53:50 +02:00
Ricardo Wurmus 81c057ced9
gnu: r-sparsem: Update to 1.77. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
 2017-08-03 17:53:50 +02:00
Ricardo Wurmus 127b926bc1
gnu: r-segmented: Update to 0.5-2.1. 
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
 2017-08-03 17:53:49 +02:00
Ricardo Wurmus fe9917284f
gnu: r-xml: Update to 3.98-1.9. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
 2017-08-03 17:53:49 +02:00
Ricardo Wurmus cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
 2017-08-03 17:53:49 +02:00
Ricardo Wurmus 7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
 2017-08-03 17:53:49 +02:00
Ricardo Wurmus 1c41d51743
gnu: r-plotrix: Update to 3.6-5. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
 2017-08-03 17:53:49 +02:00
Ricardo Wurmus 76040b8561
gnu: r-readr: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus d8048a1212
gnu: r-withr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus f212bf84ab
gnu: r-git2r: Update to 0.19.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus 58e1ce86ab
gnu: r-checkmate: Update to 1.8.3. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus 63f934e672
gnu: r-backports: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
 2017-08-03 17:53:48 +02:00
Ricardo Wurmus c832d326a1
gnu: r-formula: Update to 1.2-2. 
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus f05c6275b7
gnu: r-r6: Update to 2.2.2. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus b07c8c0156
gnu: r-knitr: Update to 1.16. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus 6dc86e8dfc
gnu: r-formatr: Update to 1.5. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus 12cd797541
gnu: r-evaluate: Update to 0.10.1. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus d5ce380711
gnu: r-dbi: Update to 0.7. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
 2017-08-03 17:53:47 +02:00
Ricardo Wurmus 831858a7d3
gnu: r-bit64: Update to 0.9-7. 
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus 6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus dbeda1b4a0
gnu: r-matrix: Update to 1.2-10. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus 74b037df64
gnu: r-foreign: Update to 0.8-69. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus af1eeabe89
gnu: r-boot: Update to 1.3-20. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
 2017-08-03 17:53:46 +02:00
Ricardo Wurmus 64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1. 
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus c628b8418a
gnu: r-ranger: Update to 0.8.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
 2017-08-03 17:53:44 +02:00
Ricardo Wurmus cc9a778ecc
gnu: r-hmisc: Update to 4.0-3. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus f9b3760636
gnu: r-plotly: Update to 4.7.1. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus d59050823e
gnu: r-igraph: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus 7b3688150b
gnu: r-purrr: Update to 0.2.2.2. 
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus 5fc74f24bf
gnu: r-devtools: Update to 1.13.3. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus aad948a0ea
gnu: r-tibble: Update to 1.3.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
 2017-08-03 17:53:43 +02:00
Ricardo Wurmus a40b2c2129
gnu: r-dplyr: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus 736332c79c
gnu: r-rcpp: Update to 0.12.12. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
 2017-08-03 17:53:42 +02:00
Ricardo Wurmus 847b457253
gnu: r-plogr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
 2017-08-03 17:53:41 +02:00
Roel Janssen 2f06dc0435
gnu: Add r-rlang. 
* gnu/packages/statistics.scm (r-rlang): New variable.
 2017-08-02 00:57:39 +02:00
Roel Janssen 8060a61798
gnu: r-rsqlite: Update to 2.0. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
 2017-08-02 00:23:16 +02:00
Roel Janssen 796237a9a4
gnu: Add r-blob. 
* gnu/packages/statistics.scm (r-blob): New variable.
 2017-08-02 00:22:33 +02:00
Roel Janssen aa184803f8
gnu: Add r-pkgconfig. 
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
 2017-08-02 00:21:40 +02:00
Roel Janssen 14fce399cc
gnu: r-foreign: Update hash after upstream tarball change. 
* gnu/packages/statistics.scm (r-foreign):  Update hash.  The only difference
  in the tarball is the metadata.  The contents are identical.
 2017-08-01 23:07:58 +02:00
Roel Janssen cdf124c607
gnu: r-foreign: Remove duplicate recipe. 
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
 2017-08-01 23:06:02 +02:00
Ricardo Wurmus 8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
 2017-07-27 10:04:09 +02:00
Ricardo Wurmus 056468dc5f
gnu: Add cran module. 
* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
 2017-07-22 23:48:57 +02:00
Efraim Flashner fcf4003950
gnu: r-spams: Update to 2.6-2017-03-22. 
* gnu/packages/statistics.scm (r-spams): Update to 2.6-2017-03-22.
[arguments]: Remove R-3.3 work-around and syntax fixes, add phase to
prevent tuning r-spams to the compiling hardware.
 2017-06-29 10:02:58 +03:00
Arun Isaac 148585c240
gnu: Move contents of zip module into compression module. 
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
 2017-06-20 18:10:35 +05:30
Roel Janssen 26bbdabdaa
gnu: r-devtools: Update to 1.13.2. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.2.
 2017-06-17 20:53:22 +02:00
Ricardo Wurmus 1dacc26956
gnu: Add r-fdrtool. 
* gnu/packages/statistics.scm (r-fdrtool): New variable.
 2017-06-09 03:28:40 +02:00
Ricardo Wurmus db0bb6f0af
gnu: Add r-lubridate. 
* gnu/packages/statistics.scm (r-lubridate): New variable.
 2017-06-09 03:27:49 +02:00
Roel Janssen 4646a79c65
gnu: r-preprocesscore: Update to 1.38.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
 2017-04-28 11:05:43 +02:00
Ricardo Wurmus a71d769d1e
gnu: r-minimal: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
 2017-04-23 22:48:19 +02:00
Ricardo Wurmus 3b74b7a283
gnu: r-caret: Update to 6.0-76. 
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 96071a6db2
gnu: r-lme4: Update to 1.1-13. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 0d5bc9382a
gnu: r-quantreg: Update to 5.33. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus f1a313dfde
gnu: r-compquadform: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
 2017-04-22 23:30:38 +02:00
Ricardo Wurmus 50d0b2c158
gnu: r-zoo: Update to 1.8-0. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus c9d200e3af
gnu: r-r-rsp: Update to 0.41.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 96338a91d5
gnu: r-rtsne: Update to 0.13. 
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
 2017-04-22 23:30:37 +02:00
Ricardo Wurmus 050d41ca87
gnu: r-memoise: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus aa745eb61f
gnu: r-markdown: Update to 0.8. 
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 958d0ee485
gnu: r-assertthat: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus 2219e691bb
gnu: r-rpart: Update to 4.1-11. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
 2017-04-22 23:30:36 +02:00
Ricardo Wurmus b3360e09a7
gnu: r-mass: Update to 7.3-47. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 4d76947e50
gnu: r-boot: Update to 1.3-19. 
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
 2017-04-22 23:30:35 +02:00
Ricardo Wurmus 1c8ee3fcc2
gnu: r-stringi: Update to 1.1.5. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.5.
 2017-04-08 10:25:50 +02:00
Ricardo Wurmus c9dccf7917
gnu: r-sourcetools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
 2017-04-06 14:39:23 +02:00
Ricardo Wurmus 0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
 2017-04-06 14:39:22 +02:00
Ricardo Wurmus 20e97759bf
gnu: r-ranger: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus da2260f96c
gnu: r-pbkrtest: Update to 0.4-7. 
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus 4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
 2017-04-06 14:39:19 +02:00
Ricardo Wurmus a977576780
gnu: r-mclust: Update to 5.2.3. 
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 0007e645d9
gnu: r-ggthemes: Update to 3.4.0. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 47f37fd169
gnu: r-statmod: Update to 1.4.29. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 4c7ab0309a
gnu: r-vipor: Update to 0.4.5. 
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
 2017-04-06 14:39:18 +02:00
Ricardo Wurmus 2f44ef97a5
gnu: r-mixtools: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus 7a8efc81f8
gnu: r-viridis: Update to 0.4.0. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus b5d5344f32
gnu: r-viridislite: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
 2017-04-06 14:39:17 +02:00
Ricardo Wurmus 82b281fe12
gnu: r-e1071: Update to 1.6-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1d1fbb7336
gnu: r-sparsem: Update to 1.76. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus fb708a1c74
gnu: r-xml: Update to 3.98-1.6. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus 0def707ad8
gnu: r-rmarkdown: Update to 1.4. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus ac5e810205
gnu: r-bbmisc: Update to 1.11. 
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
 2017-04-06 14:39:16 +02:00
Ricardo Wurmus f1870aef99
gnu: r-backports: Update to 1.0.5. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus d05e45f33c
gnu: r-multitaper: Update to 1.0-13. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 0fbae8ebca
gnu: r-xml2: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus c6e40db528
gnu: r-ade4: Update to 1.7-6. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 10ffdb94e4
gnu: r-data-table: Update to 1.10.4. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
 2017-04-06 14:39:15 +02:00
Ricardo Wurmus 9e8fac0c45
gnu: r-chron: Update to 2.3-50. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus b8acb5aa46
gnu: r-cluster: Update to 2.0.6. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus e8988ff9a0
gnu: r-dbi: Update to 0.6-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5e0fa201a2
gnu: r-gdtools: Update to 0.1.4. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 7267f358a0
gnu: r-stringr: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 5beda28f6b
gnu: r-stringi: Update to 1.1.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
 2017-04-06 14:39:14 +02:00
Ricardo Wurmus 69a8ed6a12
gnu: r-rcpp: Update to 0.12.10. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9948b8e24c
gnu: r-digest: Update to 0.6.12. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 344e4741a1
gnu: r-survival: Update to 2.41-3. 
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
 2017-04-06 14:39:13 +02:00
Ricardo Wurmus 9704bda1b3
gnu: r-matrix: Update to 1.2-8. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus 9aea2cdaff
gnu: r-lattice: Update to 0.20-35. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus 7ceb26ee83
gnu: r-rprojroot: Update to 1.2. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
 2017-04-06 14:39:12 +02:00
Ricardo Wurmus d51f05f769
gnu: r-tidyr: Update to 0.6.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1db293757b
gnu: r-roxygen2: Update to 6.0.1. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus bf6dcf59eb
gnu: Add r-commonmark. 
* gnu/packages/statistics.scm (r-commonmark): New variable.
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 1cbb07a8e4
gnu: Add r-desc. 
* gnu/packages/statistics.scm (r-desc): New variable.
 2017-04-06 14:39:10 +02:00
Ricardo Wurmus 67deeea41b
gnu: r-readr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
 2017-04-06 14:39:09 +02:00
Ricardo Wurmus 33eb555e6f
gnu: r-tibble: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
 2017-04-06 14:39:09 +02:00
Leo Famulari 7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages. 
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
 2017-04-02 20:00:51 -04:00
Marius Bakke 84157bb8bf
Merge branch 'master' into core-updates 
Most conflicts are from 6fd52309b8.
 2017-03-30 22:59:53 +02:00
Tobias Geerinckx-Rice 6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs. 
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
 2017-03-30 01:30:16 +02:00
Efraim Flashner 378de69c59
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-22 12:57:37 +02:00
Ricardo Wurmus e2c4fe7c62
gnu: Add r-cairo. 
* gnu/packages/statistics.scm (r-cairo): New variable.
 2017-03-20 21:16:11 +01:00
Mark H Weaver f67337e23e
Merge branch 'master' into core-updates 2017-03-19 18:52:12 -04:00
Ricardo Wurmus 60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems. 
Fixes <https://bugs.gnu.org/25598>.

* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 2d7c4ae3ee
gnu: r: Rename to r-minimal. 
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus f1fe5283c9
gnu: Add r-with-recommended-packages. 
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus aeb64f3cb2
gnu: r: Do not build recommended packages. 
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
 2017-03-17 10:14:02 +01:00
Ricardo Wurmus 4b005c7a75
gnu: Add r-spatial. 
* gnu/packages/statistics.scm (r-spatial): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 567b154fb0
gnu: r-rpart: Move to the set of recommended packages. 
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus a5a343656b
gnu: r-nnet: Move to set of recommended R packages. 
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 248f65269a
gnu: Add r-nlme. 
* gnu/packages/statistics.scm (r-nlme): New variable.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages. 
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus 060c12868b
gnu: r-lattice: Move to other recommended R packages. 
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
 2017-03-17 10:14:01 +01:00
Ricardo Wurmus e88bad6ddb
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 69fddd2d6e
gnu: Add r-foreign. 
* gnu/packages/statistics.scm (r-foreign): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c1999c5910
gnu: Add r-codetools. 
* gnu/packages/statistics.scm (r-codetools): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus a27bfb8484
gnu: Add r-cluster. 
* gnu/packages/statistics.scm (r-cluster): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 7489258751
gnu: Add r-class. 
* gnu/packages/statistics.scm (r-class): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus c7e80a7e0d
gnu: Add r-mass. 
* gnu/packages/statistics.scm (r-mass): New variable.
 2017-03-17 10:14:00 +01:00
Ricardo Wurmus 8f0069170c
gnu: Add r-boot. 
* gnu/packages/statistics.scm (r-boot): New variable.
 2017-03-17 10:14:00 +01:00
Efraim Flashner 3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
pjotrp 3288e647e3
gnu: r-hexbin: Update to 1.27.1-1. 
The package tarball was updated in place, resulting in a change in the hash
value.  We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.

* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
 2017-03-13 10:34:00 +01:00
Leo Famulari 3ffaec136f
gnu: Add a tzdata variant for testing purposes. 
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
 2017-03-12 20:45:46 -04:00
Raoul Jean Pierre Bonnal a5935d1946
gnu: Add r-tsne. 
* gnu/packages/bioinformatics.scm (r-tsne): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 02eec38ee1
gnu: Add r-ranger. 
* gnu/packages/statistics.scm (r-ranger): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal d1906e3147
gnu: Add r-tclust. 
* gnu/packages/statistics.scm (r-tclust): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:07 +10:00
Raoul Jean Pierre Bonnal 5a200a24eb
gnu: Add r-sn. 
* gnu/packages/statistics.scm (r-sn): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 06085b5bc5
gnu: Add r-numderiv. 
* gnu/packages/statistics.scm (r-numderiv): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal fe68c8a990
gnu: Add r-mnormt. 
* gnu/packages/statistics.scm (r-mnormt): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 362ea0dc29
gnu: Add r-rcppprogress. 
* gnu/packages/statistics.scm (r-rcppprogress): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa890f6185
gnu: Add r-caret. 
* gnu/packages/statistics.scm (r-caret): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal ab2ec643c3
gnu: Add r-car. 
* gnu/packages/statistics.scm (r-car): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal a3eb8c8191
gnu: Add r-pbkrtest. 
* gnu/packages/statistics.scm (r-pbkrtest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 51fc7d8c31
gnu: Add r-lme4. 
* gnu/packages/statistics.scm (r-lme4): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal c549864d90
gnu: Add r-nloptr. 
* gnu/packages/statistics.scm (r-nloptr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 49dc1fa5cb
gnu: Add r-quantreg. 
* gnu/packages/statistics.scm (r-quantreg): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 545d0789fc
gnu: Add r-matrixmodels. 
* gnu/packages/statistics.scm (r-matrixmodels): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal aa84100011
gnu: Add r-modelmetrics. 
* gnu/packages/statistics.scm (r-modelmetrics): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 21cfad44c1
gnu: Add r-rcppeigen. 
* gnu/packages/statistics.scm (r-rcppeigen): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:06 +10:00
Raoul Jean Pierre Bonnal 0392f82fd5
gnu: Add r-minqa. 
* gnu/packages/statistics.scm (r-minqa): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-12 10:28:05 +10:00
Raoul Jean Pierre Bonnal e08ad76658
gnu: Add r-fnn. 
* gnu/packages/statistics.scm (r-fnn): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:55:28 +10:00
Raoul Jean Pierre Bonnal 7711f61450
gnu: Add r-pbapply. 
* gnu/packages/statistics.scm (r-pbapply): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:51:50 +10:00
Raoul Jean Pierre Bonnal d4cebae286
gnu: Add r-vgam. 
* gnu/packages/statistics.scm (r-vgam): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 11:47:02 +10:00
Raoul Jean Pierre Bonnal a409e8b52f
gnu: Add r-fpc. 
* gnu/packages/statistics.scm (r-fpc): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5da4f84f1f
gnu: Add r-trimcluster. 
* gnu/packages/statistics.scm (r-trimcluster): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c0cab38e03
gnu: Add r-robustbase. 
* gnu/packages/statistics.scm (r-robustbase): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal cda0720805
gnu: Add r-deoptimr. 
* gnu/packages/statistics.scm (r-deoptimr): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal c962816dc4
gnu: Add r-prabclus. 
* gnu/packages/statistics.scm (r-prabclus): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:26 +10:00
Raoul Jean Pierre Bonnal 5638e15475
gnu: Add r-mclust. 
* gnu/packages/statistics.scm (r-mclust): New variable.

Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal a1f2668e6c
gnu: Add r-flexmix. 
* gnu/packages/statistics.scm (r-flexmix): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal 1721fb4fe7
gnu: Add r-modeltools. 
* gnu/packages/statistics.scm (r-modeltools): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Raoul Jean Pierre Bonnal d5eca4f9ac
gnu: Add r-diptest. 
* gnu/packages/statistics.scm (r-diptest): New variable.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-03-11 10:43:25 +10:00
Ricardo Wurmus f2ac937924
gnu: r: Remove obsolete configure flags. 
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus f7db12022c
gnu: r: Update to 3.3.3. 
* gnu/packages/statistics.scm (r): Update to 3.3.3.
 2017-03-09 07:38:24 +01:00
Ricardo Wurmus beaa026aa7
gnu: r: Fix more reproducibility problems. 
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
 2017-03-08 12:32:49 +01:00
Ricardo Wurmus 745c687be3
gnu: r: Fix syntax for INSTALL_OPTS. 
This is a follow-up to commit 4621acfd82.

* gnu/packages/statistics.scm (r)[arguments]: Ensure that
"--built-timestamp" appears on the same line as the other INSTALL_OPTS.
 2017-03-08 12:32:49 +01:00
Marius Bakke 6cb7477699
gnu: python-statsmodels: Update to 0.8.0. 
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
 2017-03-06 23:24:11 +01:00
Tobias Geerinckx-Rice 9c53993fb2
gnu: r-gtable: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-gtable): Remove shadowed 0.1.2 version.
[home-page]: Use HTTPS.
[synopsis, description]: Use those of the removed version.
 2017-03-03 00:59:30 +01:00
Tobias Geerinckx-Rice fe08b1a759
gnu: r-codetools: Remove duplicate definition. 
* gnu/packages/statistics.scm (r-codetools): Remove shadowed 0.2-14 version.
[home-page]: Use HTTPS.
 2017-03-03 00:59:30 +01:00
Ricardo Wurmus 4621acfd82
gnu: r: Build default packages reproducibly. 
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
 2017-02-07 20:04:49 +01:00
Raoul Jean Pierre Bonnal c6dced88f2
gnu: Add r-rann. 
* gnu/packages/statistics.scm (r-rann): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:21:22 -05:00
Raoul Jean Pierre Bonnal 37337699d7
gnu: Add r-randomforest. 
* gnu/packages/statistics.scm (r-randomforest): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:12:51 -05:00
Ben Woodcroft e4b6c565be
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2017-01-23 21:23:33 +10:00
Raoul Jean Pierre Bonnal e431eb670d
gnu: Add r-fastica. 
* gnu/packages/statistics.scm (r-fastica): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal 793f2edbbc
gnu: Add r-lars. 
* gnu/packages/statistics.scm (r-lars): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal efba686c80
gnu: Add r-mixtools. 
* gnu/packages/statistics.scm (r-mixtools): New variable.
 2017-01-20 15:38:03 +01:00
Raoul Jean Pierre Bonnal c6017f7222
gnu: Add r-cowplot. 
* gnu/packages/statistics.scm (r-cowplot): New variable.
 2017-01-20 15:38:02 +01:00
Ricardo Wurmus 26a281ef27
gnu: Add r-compquadform. 
* gnu/packages/statistics.scm (r-compquadform): New variable.
 2017-01-17 21:46:48 +01:00
Ricardo Wurmus 5f764dd7ff
gnu: Add r-fivethirtyeight. 
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
 2017-01-17 21:46:47 +01:00
Roel Janssen ac1f1e4e02
gnu: Add r-ggthemes. 
* gnu/packages/statistics.scm (r-ggthemes):  New variable.
 2017-01-12 15:14:04 +01:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Raoul Bonnal a1814e4a27
gnu: r: Update to 3.3.2. 
* gnu/packages/statistics.scm (r): Update to 3.3.2.
 2016-12-18 10:02:52 +10:00
Ben Woodcroft ce3f92e701
gnu: Add r-bit64. 
* gnu/packages/statistics.scm (r-bit64): New variable.
 2016-12-14 20:43:28 +10:00
Ben Woodcroft 42066e6b4a
gnu: Add r-bit. 
* gnu/packages/statistics.scm (r-bit): New variable.
 2016-12-14 20:43:28 +10:00
Hartmut Goebel 3bf4280659
Merge branch 'master' into python-build-system 2016-11-29 18:47:16 +01:00
Ricardo Wurmus 419a8a186f
gnu: Add r-rocr. 
* gnu/packages/statistics.scm (r-rocr): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 0cfe0570f2
gnu: Add r-gplots. 
* gnu/packages/statistics.scm (r-gplots): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 6034cd905e
gnu: Add r-gdata. 
* gnu/packages/statistics.scm (r-gdata): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus 1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus 1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus 9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus 58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Hartmut Goebel 25b2c47d75
gnu: python-statsmodels: Fix build 
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
 2016-11-15 22:31:33 +01:00
Hartmut Goebel b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs). 
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
 2016-11-15 22:31:02 +01:00
Hartmut Goebel 5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a) 
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
 2016-11-15 22:28:59 +01:00
Hartmut Goebel 00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3) 
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
 2016-11-15 22:28:38 +01:00
Ludovic Courtès 2cab1dd58b
Merge branch 'core-updates' 2016-11-13 00:34:16 +01:00
Ricardo Wurmus b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode". 
This phase is no longer needed as upstream has merged the fix in the
current release.

* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
 2016-11-10 18:49:49 +01:00
Mark H Weaver 71e21fb26d
Merge branch 'master' into core-updates 2016-11-07 00:33:16 -05:00
ng0 73ea83f517
gnu: r-proto: Update project's home-page. 
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-11-06 14:35:21 +02:00
Mark H Weaver 8b6ad165d1
Merge branch 'master' into core-updates 2016-11-06 03:29:06 -05:00
Roel Janssen 8af47ef603
gnu: r-nmf: Use bigmemory. 
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
 2016-11-04 14:53:24 +01:00
Roel Janssen 59523c4cf5
gnu: Add r-bigmemory. 
* gnu/packages/statistics.scm (r-bigmemory): New variable.
 2016-11-04 14:46:47 +01:00
Roel Janssen 4a83865286
gnu: Add r-synchronicity. 
* gnu/packages/statistics.scm (r-synchronicity): New variable.
 2016-11-04 14:40:13 +01:00
Roel Janssen c6105d69c0
gnu: Add r-bigmemory-sri. 
gnu/packages/statistics.scm (r-bigmemory-sri): New variable.
 2016-11-04 14:35:04 +01:00
Ricardo Wurmus e71659162b
gnu: r-hmisc: Update to 4.0.0. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0.0.
[propagated-inputs]: Add r-htmltable, r-htmltools, r-viridis,
r-survival.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f158b92caf
gnu: r-r-oo: Update to 1.21.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.21.0.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus f890981690
gnu: r-openssl: Update to 0.9.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.5.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus fbe5161c7d
gnu: r-checkmate: Update to 1.8.2. 
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.2.
 2016-11-03 19:01:45 +01:00
Ricardo Wurmus 572e1a0ca7
gnu: r-acepack: Update to 1.4.1. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.1.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus 054a9a786b
gnu: r-gdtools: Update to 0.1.1. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.1.
[propagated-inputs]: Add r-withr.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus d13a4e2575
gnu: r-proto: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-proto): Update to 1.0.0.
 2016-11-03 19:01:44 +01:00
Ricardo Wurmus ebbd4d0bfd
gnu: Add r-survival. 
* gnu/packages/statistics.scm (r-survival): New variable.
 2016-11-03 19:01:44 +01:00
Mark H Weaver 3d82676919
Merge branch 'master' into core-updates 2016-10-27 20:21:26 -04:00
Roel Janssen b5ce25cc0e
gnu: r: Use uname from Guix 
* gnu/packages/statistics.scm (r): Use uname from Guix.
 2016-10-27 16:37:24 +02:00
Leo Famulari 02c73adcdf
Merge branch 'master' into core-updates 2016-10-26 19:00:06 -04:00
Ricardo Wurmus aba6463975
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-10-26 18:14:17 +02:00
Ricardo Wurmus a8e893b0b8
gnu: r-matrixstats: Update to 0.51.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus fd54f65e72
gnu: r-r-utils: Update to 2.4.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
 2016-10-26 16:23:32 +02:00
Ricardo Wurmus 89242ea47f
gnu: r-irlba: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 4f2ebc16ce
gnu: r-codetools: Update to 0.2-15. 
* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus cf738e961e
gnu: r-snow: Update to 0.4-2. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
 2016-10-26 16:23:31 +02:00
Ricardo Wurmus 41bc22a7de
gnu: r-backports: Update to 1.0.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 72263db73d
gnu: r-foreign: Update to 0.8-67. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
 2016-10-26 16:23:30 +02:00
Ricardo Wurmus 130410d941
gnu: r-cluster: Update to 2.0.5. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e7622804aa
gnu: r-acepack: Update to 1.4.0. 
* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus bff4dc6324
gnu: r-r6: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
 2016-10-26 16:23:29 +02:00
Ricardo Wurmus e0a9093139
gnu: r-evaluate: Update to 0.10. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 2d9da70bbe
gnu: r-reshape2: Update to 1.4.2. 
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus c2a9e99134
gnu: r-stringi: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
 2016-10-26 16:23:28 +02:00
Ricardo Wurmus 03f72a1e1f
gnu: r-matrix: Update to 1.2-7.1. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 9e087a1fde
gnu: r-colorspace: Update to 1.2-7. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
 2016-10-26 16:23:27 +02:00
Ricardo Wurmus 062737a178
gnu: r-rcpparmadillo: Update to 0.7.500.0.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 8e1369f19a
gnu: r-rmarkdown: Update to 1.1. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
 2016-10-26 16:23:25 +02:00
Ricardo Wurmus 557a4b8e61
gnu: Add r-kernsmooth. 
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
 2016-10-26 09:28:07 +02:00
Mark H Weaver abcf4858cd
Merge branch 'master' into core-updates 2016-10-12 09:28:14 -04:00
Ben Woodcroft a751afb217
gnu: r-mgcv: Update to 1.8-15. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-15.
 2016-10-08 22:29:58 +10:00
Leo Famulari 9c2130757c
Merge branch 'master' into core-updates 2016-10-03 17:08:05 -04:00
Ricardo Wurmus 88cf917b74
gnu: r-plotly: Update to 4.5.2. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.2.
[propagated-inputs]: Remove r-plyr; remove r-viridis; add r-dplyr; add
r-lazyeval; add r-purrr; add r-tibble; add r-viridislite.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus a3c6445be5
gnu: Add r-purrr. 
* gnu/packages/statistics.scm (r-purrr): New variable.
 2016-10-02 17:31:39 +02:00
Ricardo Wurmus c6ab73e8ff
gnu: Add r-viridislite. 
* gnu/packages/statistics.scm (r-viridislite): New variable.
 2016-10-02 17:31:36 +02:00
Ludovic Courtès 79355ae3e8
Merge branch 'master' into core-updates 2016-09-30 12:05:27 +02:00
Alex Kost b94a6ca074
gnu: Add and use gettext-minimal. 
* gnu/packages/gettext.scm (gnu-gettext): Rename to...
(gettext-minimal): ... this.  Adjust synopsis and description.
(gnu-gettext): Inherit from it.
(po4a): Use 'gettext-minimal' instead of 'gnu-gettext'.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/apl.scm: Likewise.
* gnu/packages/attr.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/commencement.scm: Likewise.
* gnu/packages/crypto.scm: Likewise.
* gnu/packages/databases.scm: Likewise.
* gnu/packages/disk.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/education.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/enlightenment.scm: Likewise.
* gnu/packages/fcitx.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gkrellm.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/ibus.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/iso-codes.scm: Likewise.
* gnu/packages/kde-frameworks.scm: Likewise.
* gnu/packages/kodi.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/man.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mono.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/nano.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/package-management.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/sawfish.scm: Likewise.
* gnu/packages/statistics.scm: Likewise.
* gnu/packages/terminals.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/webkit.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wine.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
 2016-09-28 17:54:50 +03:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs. 
* gnu/packages/statistics.scm (r-batchjobs): New variable.
 2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail. 
* gnu/packages/statistics.scm (r-fail): New variable.
 2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc. 
* gnu/packages/statistics.scm (r-bbmisc): New variable.
 2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate. 
* gnu/packages/statistics.scm (r-checkmate): New variable.
 2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports. 
* gnu/packages/statistics.scm (r-backports): New variable.
 2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr. 
* gnu/packages/statistics.scm (r-sendmailr): New variable.
 2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap. 
* gnu/packages/statistics.scm (r-pheatmap): New variable.
 2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix. 
* gnu/packages/statistics.scm (r-matrix): New variable.
 2016-09-26 03:21:32 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc. 
* gnu/packages/statistics.scm (r-hmisc): New variable.
 2016-09-26 03:21:13 +02:00
Ricardo Wurmus 2213730c5b
gnu: Add r-rpart. 
* gnu/packages/statistics.scm (r-rpart): New variable.
 2016-09-26 03:20:52 +02:00
Ricardo Wurmus b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted. 
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
 2016-09-21 21:38:39 +02:00
Ricardo Wurmus c533589c66
gnu: Add r-e1071. 
* gnu/packages/statistics.scm (r-e1071): New variable.
 2016-09-16 17:29:48 +02:00
Ricardo Wurmus c72c12491a
gnu: Add r-rtsne. 
* gnu/packages/statistics.scm (r-rtsne): New variable.
 2016-09-16 17:29:48 +02:00
Ricardo Wurmus 87a7c55ebd
gnu: r-rmarkdown: Update to 1.0. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.0.
[propagated-inputs]: Add "r-jsonlite" and "r-base64enc".
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus de1eebd7d7
gnu: r-dplyr: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.5.0.
 2016-09-12 17:44:48 +02:00
Ricardo Wurmus 5e67507273
gnu: r-rcpparmadillo: Update to 0.7.400.2.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 7.400.2.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.400.2.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 1b7f85f52d
gnu: r-tidyr: Update to 0.6.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.0.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus c3253ce1b5
gnu: r-irlba: Update to 2.1.1. 
* gnu/packages/statistics.scm (r-irlba): Update to 2.1.1.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus f791b689b2
gnu: r-dt: Update to 0.2. 
* gnu/packages/statistics.scm (r-dt): Update to 0.2.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 7931531a23
gnu: r-sparsem: Update to 1.72. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.72.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus b9ab3b08b8
gnu: r-lambda-r: Update to 1.1.9. 
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.1.9.
 2016-09-12 17:44:47 +02:00
Ricardo Wurmus 27f10d3db2
gnu: r-futile-logger: Update to 1.4.3. 
* gnu/packages/statistics.scm (r-futile-logger): Update to 1.4.3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus fce4dfd82e
gnu: r-lattice: Update to 0.20-34. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-34.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus bdfc2c954e
gnu: r-plotrix: Update to 3.6-3. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-3.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 8c6e2b843e
gnu: r-readr: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 1.0.0.
[propagated-inputs]: Add "r-hms", "r-tibble", and "r-r6".
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus b90314b4f8
gnu: Add r-hms. 
* gnu/packages/statistics.scm (r-hms): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus a589acfb08
gnu: Add r-tibble. 
* gnu/packages/statistics.scm (r-tibble): New variable.
 2016-09-12 17:44:46 +02:00
Ricardo Wurmus 348bb8d663
gnu: r-withr: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-withr): Update to 1.0.2.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 3bb9708a7f
gnu: r-devtools: Update to 1.12.0. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.12.0.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2cfac445e
gnu: r-rstudioapi: Update to 0.6. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.6.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e58498b6ee
gnu: r-httr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.2.1.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 130c3c8b93
gnu: r-openssl: Update to 0.9.4. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.4.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 81147fe886
gnu: r-rversions: Update to 1.0.3. 
* gnu/packages/statistics.scm (r-rversions): Update to 1.0.3.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus 03306201a7
gnu: r-multitaper: Update to 1.0-12. 
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-12.
 2016-09-12 17:44:45 +02:00
Ricardo Wurmus e2ad0228fc
gnu: r-xml2: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.0.0.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ef82bd5888
gnu: r-r6: Update to 2.1.3. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.3.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 344d5323d6
gnu: r-crayon: Update to 1.3.2. 
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.2.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus ad28491e12
gnu: r-knitr: Update to 1.14. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.14.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 2d037a2d68
gnu: r-mime: Update to 0.5. 
* gnu/packages/statistics.scm (r-mime): Update to 0.5.
 2016-09-12 17:44:44 +02:00
Ricardo Wurmus 5b67bd6e8f
gnu: r-dbi: Update to 0.5-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.5-1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 6d6a917a16
gnu: r-lazyeval: Update to 0.2.0. 
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus bf1e9e4517
gnu: r-stringr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.1.0.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 1f94ede8ea
gnu: r-stringi: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.1.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus deb265a7b3
gnu: r-plyr: Update to 1.8.4. 
* gnu/packages/statistics.scm (r-plyr): Update to 1.8.4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 8b2f96e73a
gnu: r-permute: Update to 0.9-4. 
* gnu/packages/statistics.scm (r-permute): Update to 0.9-4.
 2016-09-12 17:44:43 +02:00
Ricardo Wurmus 21f45c9d9e
gnu: r-mgcv: Update to 1.8-14. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-14.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus cb27d6ba4e
gnu: r-rcpp: Update to 0.12.7. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.7.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 5aaa12dfb5
gnu: r-digest: Update to 0.6.10. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.10.
 2016-09-12 17:44:42 +02:00
Ricardo Wurmus 3e4c0c6662
gnu: Add r-segmented. 
* gnu/packages/statistics.scm (r-segmented): New variable.
 2016-09-12 17:44:41 +02:00
Ben J Woodcroft 912c7a840a
gnu: r: Update to 3.3.1. 
* gnu/packages/statistics.scm (r): Update to 3.3.1.
 2016-09-09 21:54:41 +10:00
Ben J Woodcroft 71e98ca571
gnu: r: Add openblas input. 
* gnu/packages/statistics.scm (r)[inputs]: Add openblas.
[arguments]: Adapt configure flags.
 2016-09-09 21:54:20 +10:00
Ricardo Wurmus 8b52167e77
gnu: python-statsmodels: Fix tests. 
* gnu/packages/statistics.scm (python-statsmodels): Add patch to fix tests.
(python2-statsmodels)[propagated-inputs]: Add python2-pytz.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-08-04 13:40:13 +02:00
Efraim Flashner df2c7563ff
gnu: pspp: Update to 0.10.2. 
* gnu/packages/statistics.scm (pspp): Update to 0.10.2.
 2016-07-24 15:43:35 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc. 
* gnu/packages/statistics.scm (r-domc): New variable.
 2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper. 
* gnu/packages/statistics.scm (r-multitaper): New variable.
 2016-07-07 10:46:30 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4. 
* gnu/packages/statistics.scm (r-ade4): New variable.
 2016-07-07 10:46:05 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite. 
* gnu/packages/statistics.scm (r-svglite): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools. 
* gnu/packages/statistics.scm (r-gdtools): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c7f04517a6
gnu: Add r-glmnet. 
* gnu/packages/statistics.scm (r-glmnet): New variable.
 2016-07-01 09:01:20 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs. 
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
 2016-06-28 09:36:00 +02:00
Ben Woodcroft 0846620803
gnu: Add r-mgcv. 
* gnu/packages/statistics.scm (r-mgcv): New variable.
 2016-06-21 21:29:17 +10:00
Ben Woodcroft de682e6f0f
gnu: Add r-permute. 
* gnu/packages/statistics.scm (r-permute): New variable.
 2016-06-21 21:29:17 +10:00
Ricardo Wurmus aa3b391092
gnu: Add r-runit. 
* gnu/packages/statistics.scm (r-runit): New variable.
 2016-05-31 16:24:59 +02:00
Ricardo Wurmus 4ce3c2872b
gnu: Add r-knitrbootstrap. 
* gnu/packages/statistics.scm (r-knitrbootstrap): New variable.
 2016-05-31 16:18:14 +02:00
Roel Janssen 031cf6b65e
gnu: Add r-zoo. 
* gnu/packages/statistics.scm (r-zoo): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-23 12:36:38 -04:00
Ricardo Wurmus 813efdded1
gnu: r-rcpparmadillo: Update to 0.6.700.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
6.700.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c969453e1c
gnu: r-plotly: Update to 3.6.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 95513f284f
gnu: r-matrixstats: Update to 0.50.2. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus b8f6a97ebd
gnu: r-r-rsp: Update to 0.30.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus f0c56a2411
gnu: r-rmarkdown: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 2f7ac060ff
gnu: r-plotrix: Update to 3.6-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 133f27b06a
gnu: r-devtools: Update to 1.11.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 3624ad7150
gnu: r-git2r: Update to 0.15.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus c1e2c9d41a
gnu: r-openssl: Update to 0.9.3. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 383f6337a0
gnu: r-testthat: Update to 1.0.2. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 1b206aeb00
gnu: r-knitr: Update to 1.13. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.13.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus d5130e6345
gnu: r-highr: Update to 0.6. 
* gnu/packages/statistics.scm (r-highr): Update to 0.6.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus df25b0048a
gnu: r-formatr: Update to 1.4. 
* gnu/packages/statistics.scm (r-formatr): Update to 1.4.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 84e5368719
gnu: r-evaluate: Update to 0.9. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.9.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus 9a0ccf43cc
gnu: r-bh: Update to 1.60.0-2. 
* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus a76b3f6914
gnu: r-dbi: Update to 0.4-1. 
* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1.
 2016-05-20 15:18:23 +02:00
Ricardo Wurmus eb1a5b65c0
gnu: r-rcpp: Update to 0.12.5. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5.
 2016-05-20 15:18:23 +02:00
Ben Woodcroft 0947698c42 gnu: Add r-biased-urn. 
* gnu/packages/statistics.scm (r-biased-urn): New variable.
 2016-05-19 22:13:43 +10:00
Roel Janssen b5f13fdb96
gnu: Add r-mvtnorm. 
* gnu/packages/statistics.scm (r-mvtnorm): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-07 14:16:18 -04:00
Ricardo Wurmus e42eb908f6 gnu: r: Update to 3.3.0. 
* gnu/packages/statistics.scm (r): Update to 3.3.0.
[inputs]: Add curl and tzdata.
[arguments]: Set TZDIR in "set-timezone" phase.
 2016-05-06 14:58:19 +02:00
Roel Janssen 52ad9cb60e
gnu: Add r-estimability. 
* gnu/packages/statistics.scm (r-estimability): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:42:36 -04:00
Roel Janssen 82047474ea
gnu: Add r-coda. 
* gnu/packages/statistics.scm (r-coda): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-05-05 20:23:48 -04:00
Ricardo Wurmus b74f64a960 gnu: Add r-xnomial. 
* gnu/packages/statistics.scm (r-xnomial): New variable.
 2016-05-02 11:10:38 +02:00
Ricardo Wurmus c5ad883b16 gnu: r-rcpparmadillo: Update to 0.6.700.3.0. 
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 2c81794ed9 gnu: r-plotly: Update to 3.4.13. 
* gnu/packages/statistics.scm (r-plotly): Update to 3.4.13.
[propagated-inputs]: Add r-hexbin, r-scales, and r-tidyr.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 59bf9f4e6b gnu: r-httr: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-httr): Update to 1.1.0.
[propagated-inputs]: Add r-openssl.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 44d792c2e9 gnu: r-r6: Update to 2.1.2. 
* gnu/packages/statistics.scm (r-r6): Update to 2.1.2.
[propagated-inputs]: Remove.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 99eca2b18b gnu: r-testthat: Update to 1.0.0. 
* gnu/packages/statistics.scm (r-testthat): Update to 1.0.0.
[propagated-inputs]: Add r-magrittr, r-praise, and r-r6.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 0fc4213642 gnu: r-viridis: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.3.4.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 3646bf2082 gnu: r-matrixstats: Update to 0.50.1. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.1.
 2016-04-26 17:06:18 +02:00
Ricardo Wurmus 799ef55b15 gnu: r-r-rsp: Update to 0.21.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.21.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 801e9e7399 gnu: r-r-utils: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.3.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus b2436f6af9 gnu: r-r-oo: Update to 1.20.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.20.0.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 887d45d466 gnu: r-r-methodss3: Update to 1.7.1. 
* gnu/packages/statistics.scm (r-r-methodss3): Update to 1.7.1.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1e4abc0fee gnu: r-xml: Update to 3.98-1.4. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.4.
 2016-04-26 17:06:17 +02:00
Ricardo Wurmus 1647e10ebd gnu: r-gridextra: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-gridextra): Update to 2.2.1.
 2016-04-26 17:06:17 +02:00