7fae2063f8
gnu: sudo: Use ‘modify-phases’ syntax.
...
* gnu/packages/admin.scm (sudo)[arguments]: Use ‘modify-phases’.
2017-08-08 05:23:36 +02:00
4f4134c26d
gnu: linux-libre: Update to 4.12.5.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.5.
(%linux-libre-hash): Update hash.
2017-08-07 21:33:03 -04:00
99ccc74725
gnu: linux-libre@4.9: Update to 4.9.41.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.41.
2017-08-07 21:32:13 -04:00
c56b08b1e5
gnu: linux-libre@4.4: Update to 4.4.80.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.80.
2017-08-07 21:31:36 -04:00
c36e27d504
gnu: linux-libre@4.1: Update to 4.1.43.
...
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.43.
2017-08-07 21:30:47 -04:00
63755fcd65
gnu: ruby-puma: Update to 3.9.1.
...
* gnu/packages/ruby.scm (ruby-puma): Update to 3.9.1.
[source]: Remove patch.
[arguments]: Disable tests.
[native-inputs]: Remove field.
* gnu/packages/patches/ruby-puma-ignore-broken-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-08 09:31:18 +10:00
5b0c223ae3
gnu: ruby-nokogiri-diff: Update to 0.2.0-1.a38491e4.
...
* gnu/packages/ruby.scm (ruby-nokogiri-diff): Update to 0.2.0-1.a38491e4.
2017-08-08 09:30:44 +10:00
5071f17b29
gnu: ruby-tdiff: Update to 0.3.3-1.b662a604.
...
* gnu/packages/ruby.scm: Update to 0.3.3-1.b662a604
2017-08-08 09:30:40 +10:00
e7ea30d59a
ruby: Replace with ruby-2.4.1.
...
* gnu/packages/ruby.scm (ruby-2.4.1): New variable.
(ruby)[replacement]: New field.
2017-08-08 09:30:02 +10:00
57e96e48b1
gnu: propeller-gcc-4: Don't build on aarch64-linux.
...
* gnu/packages/embedded.scm (propeller-gcc-4)[supported-system]: New field.
2017-08-07 17:02:24 +03:00
6eed26443f
gnu: nim: Update to 0.17.0.
...
* gnu/packages/nim.scm (nim): Update to 0.17.0.
[source, home-page]: Use https.
[arguments]: Patch more shebangs, use custom build phase.
2017-08-07 13:37:28 +03:00
83fef82b7c
gnu: cubicle: Fix evaluation.
...
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from
(gnu packages base).
2017-08-07 12:02:33 +02:00
cda20ee816
gnu: vapoursynth: Don't build on aarch64-linux.
...
* gnu/packages/video.scm (vapoursynth)[supported-systems]: Remove
aarch64-linux from the supported-systems.
2017-08-07 07:24:17 +03:00
74033bbcc3
gnu: youtube-dl: Update to 2017.08.06.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.08.06.
2017-08-07 05:28:34 +02:00
d8af4f6dde
gnu: ntfs-3g: Update to 2017.3.23.
...
* gnu/packages/linux.scm (ntfs-3g): Update to 2017.3.23.
[source]: Remove patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-07 02:01:34 +02:00
8bad0c0bbb
gnu: ntfs-3g: Use HTTPS for the home page as well.
...
* gnu/packages/linux.scm (ntfs-3g)[home-page]: Use HTTPS.
2017-08-07 02:01:33 +02:00
ea94aff7da
gnu: wimlib: Update to 1.12.0.
...
* gnu/packages/backup.scm (wimlib): Update to 1.12.0.
2017-08-07 02:01:32 +02:00
9d217d277e
gnu: r-bsgenome-hsapiens-ucsc-hg19: Restore original hash.
...
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Restore hash from before the tarball changed in place. It changed back.
This reverts commit fd40857938
2017-08-07 01:58:39 +02:00
46f3c8f289
gnu: khal: Don't propagate vdirsyncer.
...
* gnu/packages/calendar.scm (khal)[propagated-inputs]: Move vdirsyncer ...
[native-inputs]: ... here.
2017-08-06 16:58:03 -04:00
fd8f946379
gnu: python-icalendar: Update to 3.11.6.
...
* gnu/packages/python.scm (python-icalendar): Update to 3.11.6.
2017-08-06 16:58:02 -04:00
03776ebd36
gnu: mpg123: Update to 1.25.4.
...
* gnu/packages/mp3.scm (mpg123): Update to 1.25.4.
2017-08-06 16:58:02 -04:00
b0c95908c0
gnu: freedoom: Update to 0.11.3.
...
* gnu/packages/games.scm (freedoom): Update to 0.11.3.
[arguments]: Remove unnecessary "no" phase.
2017-08-06 14:13:07 -04:00
f7b60fdc36
gnu: deutex: Update to 5.0.0.
...
* gnu/packages/game-development.scm (deutex): Update to 5.0.0.
[source]: Change upstream URI.
[arguments]: Enable tests and restore normal "configure" and "install"
phases.
[native-inputs]: Add asciidoc.
2017-08-06 14:13:07 -04:00
403097d26d
gnu: Add motti.
...
* gnu/packages/motti.scm (motti): New variable.
2017-08-06 19:13:33 +03:00
b7ac10e6da
gnu: keepassx: Superseded by keepassxc.
...
* gnu/packages/password-utils.scm (keepassx)[properties]: New field.
2017-08-06 19:13:32 +03:00
99672f7b1d
gnu: Add keepassxc.
...
* gnu/packages/password-utils.scm (keepassxc): New variable.
2017-08-06 19:13:06 +03:00
3ea2eaa8f3
gnu: python-efl: Update to 1.20.0.
...
* gnu/packages/enlightenment.scm (python-efl): Update to 1.20.0.
[source]: Add alternate source uri.
[arguments]: Enable tests.
2017-08-06 18:13:09 +03:00
87cd1f5c2a
gnu: efl: Update to 1.20.1.
...
* gnu/packages/enlightenment.scm (efl): Update to 1.20.1.
2017-08-06 18:13:05 +03:00
3bfee8ff02
gnu: make-u-boot-package: Don't unnecessarily cross-compile.
...
* gnu/packages/bootloaders.scm (make-u-boot-package)[native-inputs]: Only
use cross-gcc and cross-binutils if compiling for a different
architecture.
[arguments]: Only use cross compiling make-flags if cross compiling.
2017-08-06 18:13:03 +03:00
18c6a7b4c8
gnu: Add python-flask-httpauth.
...
* gnu/packages/python.scm (python-flask-httpauth, python2-flask-httpauth):
New variables.
2017-08-06 13:35:07 +02:00
abd8825f90
gnu: Add font-open-dyslexic.
...
* gnu/packages/fonts.scm (font-open-dyslexic): New variable.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:49:52 +05:30
799097e445
gnu: gnucash: Update to 2.6.17.
...
* gnu/packages/gnucash.scm (gnucash): Update to 2.6.17.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-06 10:01:56 +05:30
01a61d7040
gnu: libtasn1: Fix CVE-2017-10790.
...
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05 20:17:53 -04:00
91d94e28ec
gnu: emacs-exwm-x: Do not set DISPLAY.
...
* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has
been fixed upstream in exwm-0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:58:58 +05:30
e78e38a4bb
gnu: emacs-exwm: Update to 0.15.
...
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15.
Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05 18:48:54 +05:30
7f171fdaad
gnu: git: Update to 2.14.0.
...
* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05 14:07:43 +02:00
eedcfa704e
gnu: lftp: Update to 4.7.8.
...
* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05 14:07:42 +02:00
3d5d87a3ae
gnu: Add cubicle.
...
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05 10:11:42 +02:00
1cec346232
gnu: php: Update to 7.1.8.
...
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it
* gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04 18:58:33 +02:00
8d6c845d68
gnu: Add r-crosstalk.
...
* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04 11:23:53 +02:00
a3cd23b639
gnu: Add r-shiny.
...
* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04 11:23:53 +02:00
0b0aa76fa8
gnu: Add js-es5-shim.
...
* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04 11:23:53 +02:00
4f65067bde
gnu: Add js-selectize.
...
* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04 11:23:53 +02:00
c4abc94d2b
gnu: Add js-datatables.
...
* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04 11:23:53 +02:00
a6bbb2a0d8
gnu: Add js-highlight.
...
* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04 11:23:53 +02:00
3f48403aaf
gnu: Add js-strftime.
...
* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04 11:23:52 +02:00
68ffb6c586
gnu: Add js-json2.
...
* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04 11:23:52 +02:00
ed69963b03
gnu: Add js-html5shiv.
...
* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04 11:23:52 +02:00
b316caaa9c
gnu: python-lz4: Fix typo in synopsis.
...
* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04 05:00:26 +02:00
e9f6a935fb
gnu: python-lz4: Update to 0.10.1.
...
* gnu/packages/compression.scm (python-lz4): Update to 0.10.1.
[native-inputs]: Add python-setuptools-scm.
2017-08-04 04:59:48 +02:00
54360c917e
gnu: diffoscope: Use HTTPS.
...
* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04 04:34:41 +02:00
3b4018d6f2
gnu: sshoot: Update to 1.2.6.
...
* gnu/packages/vpn.scm (sshoot): Update to 1.2.6.
[home-page]: Update to new project home.
2017-08-04 04:34:41 +02:00
f58be41761
gnu: fabric: Update to 1.13.2.
...
* gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments.
[source]: Remove ‘patches’.
* gnu/packages/patches/fabric-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04 03:46:49 +02:00
19dd5097d9
gnu: certbot, python-acme: Update to 0.17.0.
...
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04 02:32:53 +02:00
9a7fd375a2
gnu: xonsh: Update to 0.5.12.
...
* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04 02:06:39 +02:00
b55d15e795
gnu: cmark: Update to 0.28.0.
...
* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04 01:51:23 +02:00
0a3ecfd29c
gnu: thefuck: Update to 3.19.
...
* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04 01:51:23 +02:00
30ac4cc7e6
gnu: zerofree: Update to 1.1.0.
...
* gnu/packages/linux.scm (zerofree): Update to 1.1.0.
[home-page, source]: Update from old, inaccessible location.
2017-08-04 01:51:22 +02:00
4de4a1cfcc
gnu: zerofree: Expand description.
...
* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04 01:51:22 +02:00
7a068459ba
gnu: zerofree: Use ‘install-file’.
...
* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase,
using ‘install-file’.
2017-08-04 01:51:21 +02:00
0f08917df3
gnu: zerofree: Use ‘modify-phases’ syntax.
...
* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04 01:51:21 +02:00
20f8d1dd78
gnu: sshfs-fuse: Update to 2.10.
...
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04 01:51:20 +02:00
c89091459f
gnu: freerdp: Update to 2.0.0-rc0 [security fixes].
...
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}.
Reported by Leo Famulari in <https://bugs.gnu.org/27939 >.
* gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0.
[source]: Use tarball release. Adjust file-name.
[arguments]: Remove #:phases.
2017-08-04 00:52:52 +02:00
c9f4f56b24
gnu: git: Enable tests.
...
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add
'patch-tests' phase.
2017-08-04 00:52:13 +02:00
81ca29a6d6
gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].
...
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03 18:06:19 -04:00
9e37e537a2
gnu: Add missing references to (gnu packages cran).
...
This is a follow-up to commit a8cba9dd11
2017-08-03 22:15:57 +02:00
7cb6155088
gnu: bioinformatics.scm: Use (gnu packages cran) module.
...
This is a follow up to a8cba9dd11
2017-08-03 21:39:12 +03:00
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
ceb802a31c
gnu: r-desc: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
5e0de29892
gnu: r-seqminer: Update to 6.0.
...
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03 17:53:54 +02:00
4e0c847d59
gnu: r-wgcna: Update to 1.60.
...
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03 17:53:54 +02:00
c8a9b2bcbf
gnu: r-qtl: Update to 1.41-6.
...
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03 17:53:54 +02:00
023aa8ff58
gnu: r-seqinr: Update to 3.4-5.
...
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
2017-08-03 17:53:54 +02:00
7150f1c30c
gnu: r-optparse: Update to 1.4.4.
...
* gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
2017-08-03 17:53:53 +02:00
3f6ec083ec
gnu: r-bookdown: Update to 0.4.
...
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
2017-08-03 17:53:53 +02:00
85cd755417
gnu: r-tclust: Update to 1.2-7.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
41692b2963
gnu: r-mclust: Update to 5.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
...
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
...
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
...
* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
...
* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
...
* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
...
* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
...
* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
...
* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
e584b9fc1b
gnu: r-curl: Update to 2.8.1.
...
* gnu/packages/web.scm (r-curl): Update to 2.8.1.
2017-08-03 17:53:45 +02:00
53deffe5e9
gnu: r-htmlwidgets: Update to 0.9.
...
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.9.
2017-08-03 17:53:45 +02:00
850151058d
gnu: r-htmltools: Update to 0.3.6.
...
* gnu/packages/web.scm (r-htmltools): Update to 0.3.6.
2017-08-03 17:53:45 +02:00
a1e54db2ac
gnu: r-servr: Update to 0.6.
...
* gnu/packages/web.scm (r-servr): Update to 0.6.
2017-08-03 17:53:45 +02:00
9fe794f0f7
gnu: r-jsonlite: Update to 1.5.
...
* gnu/packages/web.scm (r-jsonlite): Update to 1.5.
2017-08-03 17:53:45 +02:00
2d81bc16a9
gnu: r-httpuv: Update to 1.3.5.
...
* gnu/packages/web.scm (r-httpuv): Update to 1.3.5.
2017-08-03 17:53:44 +02:00
0f2eee0d96
gnu: r-pracma: Update to 2.0.7.
...
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03 17:53:44 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
...
* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
4bb0b4cc0a
gnu: Add r-bindrcpp.
...
* gnu/packages/cran.scm (r-bindrcpp): New variable.
2017-08-03 17:53:42 +02:00
eed58a0886
gnu: Add r-bindr.
...
* gnu/packages/cran.scm (r-bindr): New variable.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
...
* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
5bee6bf409
gnu: Add r-glue.
...
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03 17:53:41 +02:00
dd4b7476ec
gnu: Add grub-hybrid.
...
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03 16:35:34 +02:00
75e6639f36
gnu: htseq: Use PyPI URI.
...
This is a follow-up to 92971d68ac
2017-08-03 21:08:13 +10:00
92971d68ac
gnu: htseq: Update to 0.9.1.
...
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1.
[arguments]: Use python-3 by removing field.
[native-inputs]: Add 'python-cython'.
[propagated-inputs]: Use python3 numpy package.
[inputs]: Use python3 pysam package. Add 'python-matplotlib'.
(python2-htseq): New variable.
(clipper)[inputs]: Use it.
2017-08-03 21:02:30 +10:00
a8ead6f91b
gnu: vc: Limit to x86_64 and i686.
...
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03 13:34:18 +03:00
5638d71502
gnu: openscenegraph: Add 'Release' configure flag.
...
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03 10:35:31 +03:00
68a29ab8d0
gnu: Add LeoCAD.
...
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03 00:33:02 -05:00
5d8312f1c6
gnu: youtube-dl: Update to 2017.07.30.1.
...
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03 05:31:24 +02:00
6862c72373
gnu: tor: Update to 0.3.0.10.
...
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-03 01:56:22 +02:00
edd08fb7ac
gnu: glibc@2.22: Fix security issues.
...
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}.
* gnu/packages/base.scm (glibc@2.22 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2015-7547.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:35 +03:00
a0ae64a334
gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.
...
* gnu/packages/base.scm (glibc@2.23 )[source]: Add patches.
* gnu/packages/patches/glibc-CVE-2016-3075.patch,
gnu/packages/patches/glibc-CVE-2016-3706.patch,
gnu/packages/patches/glibc-CVE-2016-4429.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02 21:51:33 +03:00
575e5e4e51
gnu: glibc@2.24: Fix CVE-2015-5180.
...
* gnu/packages/base.scm (glibc@2.24 )[source]: Add patch.
* gnu/packages/patches/glibc-CVE-2015-5180.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02 21:51:31 +03:00
2c5cf84430
gnu: python2-conda: Fix build by building with enum34.
...
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'.
[native-inputs]: Add python2-enum34.
2017-08-02 14:39:33 -04:00
9ef5940ce4
gnu: calibre: Add python2-msgpack as an input.
...
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02 20:20:12 +03:00
721d7a6912
gnu: gcc@4.7: Don't built on aarch64.
...
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]:
New field.
2017-08-02 19:14:26 +03:00
696f1d0fb1
gnu: libpng-apng: Be sure to apply the APNG patch.
...
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of
the patching procedures.
2017-08-02 11:17:57 -04:00
e0958c2df8
gnu: libpng-apng: Update to 1.6.28.
...
Fixes <https://bugs.gnu.org/27556 >.
* gnu/packages/image.scm (libpng-apng): Update to 1.6.28.
Remove inherit of 'libpng'.
[version]: Use own version, remove 'package-version libpng'.
[source]: Don't inherit the source of libpng.
[arguments]: Update hash of libpng-apng source.
Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02 11:10:31 -04:00
33485fa913
gnu: eyed3: Update to 0.8, build with python3.
...
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8.
[arguments]: Disable tests; don't use python-2.
[propagated-inputs]: Add python-six and python-grako.
[native-inputs]: Remove.
2017-08-02 14:08:33 +02:00
a70b03d413
gnu: Add python-grako
...
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02 14:08:33 +02:00
0abf526420
gnu: hdf4: Update to 4.12.13.
...
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02 14:08:24 +02:00
ced2d2b7ca
gnu: libvirt: Update to 3.6.0.
...
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02 07:15:21 +02:00
2e508b6dc0
gnu: libvirt: Use HTTPS.
...
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02 07:15:21 +02:00
2f06dc0435
gnu: Add r-rlang.
...
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
f1915a5dd0
gnu: r-deseq2: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02 00:33:23 +02:00
fd215c2978
gnu: r-annotationforge: Update to 1.18.1.
...
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02 00:33:07 +02:00
bd4a0bab5f
gnu: r-category: Update to 2.42.1.
...
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02 00:32:46 +02:00
0ff478344b
gnu: r-biocstyle: Update to 2.4.1.
...
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02 00:32:31 +02:00
9c4348d8c4
gnu: r-dnacopy: Update to 1.50.1.
...
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02 00:32:11 +02:00
3ec25eb2a8
gnu: r-iranges: Update to 2.10.2.
...
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02 00:31:46 +02:00
6252dd0f15
gnu: r-genomeinfodb: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02 00:31:28 +02:00
48f5d283b2
gnu: r-variantannotation: Update to 1.22.3.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02 00:31:08 +02:00
1b4738e23c
gnu: r-limma: Update to 3.32.5.
...
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02 00:30:49 +02:00
1898a7832f
gnu: r-biobase: Update to 2.36.2.
...
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02 00:30:27 +02:00
62eb93a7d0
gnu: r-annotationdbi: Update to 1.38.2.
...
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02 00:28:32 +02:00
0c6494a1db
gnu: r-biomart: Update to 2.32.1.
...
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02 00:28:16 +02:00
1ff74d074e
gnu: r-biocparallel: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02 00:27:57 +02:00
5077bc3e2e
gnu: r-biostrings: Update to 2.44.2.
...
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02 00:27:35 +02:00
adf5d0a0bc
gnu: r-delayedarray: Update to 0.2.7.
...
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02 00:27:16 +02:00
f41150f13d
gnu: r-summarizedexperiment: Update to 1.6.3.
...
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02 00:26:55 +02:00
26760c80cd
gnu: r-genomicalignments: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02 00:26:33 +02:00
15afa9bf8f
gnu: r-rtracklayer: Update to 1.36.4.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02 00:26:00 +02:00
8cfaa9ab4e
gnu: r-genomicfeatures: Update to 1.28.4.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02 00:25:26 +02:00
9eb2714625
gnu: r-copywriter: Update to 2.8.1.
...
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02 00:25:00 +02:00
bfa0d1e773
gnu: r-sva: Update to 3.24.4.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02 00:24:27 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
...
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
...
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
fc8f0631b4
gnu: re2: Update to 2017-08-01.
...
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
2017-08-01 23:37:20 +02:00
1926fd2baa
gnu: maim: Update to 5.4.66.
...
* gnu/packages/xdisorg.scm (maim): Update to 5.4.66.
2017-08-01 23:35:31 +02:00
7d960db1e3
gnu: slop: Update to 7.3.48.
...
* gnu/packages/xdisorg.scm (slop): Update to 7.3.48.
2017-08-01 23:35:03 +02:00
b73e49f595
gnu: git: Update to 2.13.4.
...
* gnu/packages/version-control.scm (git): Update to 2.13.4.
2017-08-01 23:34:41 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
...
* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
...
* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
d0386db493
gnu: rapidjson: Update to 1.1.0.
...
* gnu/packages/web.scm (rapidjson): Update to 1.1.0.
[source]: Remove snippet.
2017-08-01 14:42:44 -04:00
f2e1271809
gnu: Add pidentd.
...
* gnu/packages/networking.scm (pidentd): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 20:57:51 +03:00
89c9445aa2
gnu: hyperrogue: Update to 10.0e.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.0e.
[arguments]: Adjust accordingly.
2017-08-01 12:14:54 -04:00
d931a4bbeb
gnu: metabat: Limit to x86_64 and i686 only.
...
* gnu/packages/bioinformatics.scm (metabat)[supported-systems]: New field.
2017-08-01 17:28:35 +03:00
4bfdf034e2
gnu: Add emacs-yasnippet-snippets.
...
* gnu/packages/emacs.scm (emacs-yasnippet-snippets): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:33:07 +02:00
1f0d47059d
gnu: emacs-yasnippet: Upgrade to 0.12.0.
...
* gnu/packages/emacs.scm (emacs-yasnippet): Upgrade to 0.12.0.
[source]: Remove an uninstalled directory from yas-snippet-dirs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:59 +02:00
04b6d6f7f7
gnu: guile-ssh: Update to 0.11.2.
...
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.2.
[source]: Remove 'patches', 'modules', and 'snippet'.
* gnu/packages/patches/guile-ssh-channel-finalization.patch,
gnu/packages/patches/guile-ssh-double-free.patch,
gnu/packages/patches/guile-ssh-rexec-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
2017-08-01 15:32:07 +02:00
12235a124f
gnu: artanis: Unbundled guile-json and version according to documentation.
...
* gnu/packages/guile.scm (artanis): Unbundled guile-json and version
according to documentation.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-08-01 15:32:07 +02:00
269504a797
gnu: python-pbr-minimal: Update to 3.0.1
...
* gnu/packages/python.scm (python-pbr-minimal): Update to 3.0.1
[source]: Update hash and remove patch.
* gnu/packages/patches/python-pbr-fix-man-page-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-01 15:21:52 +03:00
3d0fbd3c2f
gnu: libgit2: Enable SHA-1 collision detection.
...
* gnu/packages/version-control.scm (libgit2)[arguments]: Enable '-DUSE_SHA1DC'
in #:configure-flags.
2017-08-01 01:02:53 -04:00
befb2c0e6e
gnu: ruby-bio-commandeer: Update to 0.2.0.
...
* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.2.0.
2017-08-01 14:09:07 +10:00
e1ecc8908e
gnu: libmicrohttpd: Update to 0.9.55.
...
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.55.
[arguments]: Add 'add-missing-LDFLAGS' phase.
2017-07-31 22:51:34 +02:00
Tobias Geerinckx-Rice