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9748 Commits

Author SHA1 Message Date
Leo Famulari 0f971a0475
gnu: Update URLs for sourceforge.net. 
* gnu/packages/audio.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/lxde.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
 2016-07-22 11:47:12 -04:00
Efraim Flashner 8ef843c711
gnu: aegis: Use 'modify-phases'. 
* gnu/packages/version-control.scm (aegis)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 2ce516d359
gnu: git: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner bf3c57ff2d
gnu: cssc: Use 'modify-phases'. 
* gnu/packages/version-control.scm (cssc)[arguments]: Use 'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 7c5a145414
gnu: subversion: Use 'modify-phases'. 
* gnu/packages/version-control.scm (subversion)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner ce84c924ac
gnu: subversion: Use https. 
* gnu/packages/version-control.scm (subversion)[source]: Use https.
[home-page]: Use https.
 2016-07-22 18:24:22 +03:00
Efraim Flashner aac42d7885
gnu: git-flow: Use 'modify-phases'. 
* gnu/packages/version-control.scm (git-flow)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 430e67a459
gnu: gnuplot: Update to upstream's re-release of 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Add a guix revision number to the
version scheme of gnuplot to force an update.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 18d4d10f34
gnu: enlightenment: Update to 0.21.1. 
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.1.
 2016-07-22 18:24:22 +03:00
Efraim Flashner 730c740e43
gnu: bazaar: Use 'modify-phases'. 
* gnu/packages/version-control.scm (bazaar)[arguments]: Use
'modify-phases'.
 2016-07-22 18:24:22 +03:00
Ricardo Wurmus f21403e2b6 gnu: icedtea-6: Generate keystore. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Add phase
"install-keystore".
[native-inputs]: Add nss-certs.
 2016-07-22 17:10:25 +02:00
Ricardo Wurmus 9bc84dfea9 gnu: icedtea-6: Use modify-phases syntax. 
* gnu/packages/java.scm (icedtea-6)[arguments]: Use modify-phases
  syntax.
 2016-07-22 17:10:11 +02:00
Ricardo Wurmus 745ad37a78 gnu: nss-certs: Stop inheriting from nss package. 
* gnu/packages/certs.scm (nss-certs): Stop inheriting from nss package.
 2016-07-22 17:10:11 +02:00
Danny Milosavljevic c2f0dc6ed1
gnu: Add ptpython and ptpython2. 
* gnu/packages/python.scm (ptpython, ptpython-2): New variables.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-22 15:06:05 +02:00
宋文武 782170c4f5
gnu: racket: Add more inputs. 
* gnu/packages/scheme.scm (racket)[inputs]: Add glu, gmp, libpng, libx11,
mesa, mpfr, openssl and unixodbc.  Replace libjpeg-8 with libjpeg and
gtk+-2 with gtk+.
 2016-07-22 19:09:20 +08:00
宋文武 e8c6811bf1
gnu: racket: Patch dynamically loaded libraries with absolute paths. 
* gnu/packages/scheme.scm (racket)[arguments]: Patch 'ffi-lib' calls to
absolute paths in 'pre-configure' phase.  Remove 'wrap-programs' phase.
 2016-07-22 19:09:11 +08:00
Daniel Pimentel 8d63dddac1
gnu: Add python-protobuf. 
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): New variables.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-07-22 02:22:49 -04:00
Leo Famulari d7cff656df
gnu: muparser: Update source URL. 
* gnu/packages/maths.scm (muparser)[source]: Update source URL to new location.
Use URL-FETCH instead of SVN-FETCH. Update hash and package revision.
 2016-07-21 18:25:20 -04:00
Leo Famulari de67e92288
gnu: Update URLs for sourceforge.net. 
* gnu/packages/admin.scm: Update URLs pointing to sourceforge.net.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/boost.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/code.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/cups.scm: Likewise.
* gnu/packages/djvu.scm: Likewise.
* gnu/packages/docbook.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fonts.scm: Likewise.
* gnu/packages/fontutils.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/gl.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/graphviz.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/networking.scm: Likewise.
* gnu/packages/onc-rpc.scm: Likewise.
* gnu/packages/password-utils.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/photo.scm: Likewise.
* gnu/packages/popt.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/rdesktop.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/swig.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
 2016-07-21 18:09:40 -04:00
Kei Kebreau a205d3f991
gnu: Add hexedit. 
* gnu/packages/hexedit: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2016-07-21 14:06:05 -04:00
Tomáš Čech 24e964314e
services: Export *-service-type and *-configuration. 
This allows users to use 'modify-services' and similar constructs for
all these service types.

* gnu/services/avahi.scm: export avahi-configuration.
* gnu/services/base.scm: export gpm-configuration and
rngd-configuration.
* gnu/services/databases.scm: export *-service-type and *-configuration.
* gnu/services/dbus.scm: export dbus-configuration.
* gnu/services/dict.scm: export dicod-service-type.
* gnu/services/lirc.scm: export lirc-configuration and
lirc-service-type.
* gnu/services/mail.scm: export dovecot-service-type.
* gnu/services/web.scm: export nginx-configuration and
nginx-service-type.
* gnu/services/xorg.scm: export screen-locker and screen-locker?.
* gnu/services/ssh.scm: export lsh-configuration and lsh-service-type.
* gnu/services/desktop.scm: export *-service, *-service-type
and *-configuration.
* gnu/services/networking.scm: export *-configuration
and *-service-type.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-21 18:53:27 +02:00
Efraim Flashner 427dda54f2
gnu: tesseract-ocr: Update to 3.04.01. 
* gnu/packages/ocr.scm (tesseract-ocr): Update to 3.04.01.
[source]: Download from Github, add 'file-name' field, remove snippet.
[native-inputs]: Remove autoconf, automake, libtool.
[propagated-inputs]: Move leptonica ...
[inputs]: ... to here.
[arguments]: Remove 'autogen phase.
[home-page]: Move program's home-page to Github.
 2016-07-21 17:18:42 +03:00
Efraim Flashner a9c64810cd
gnu: gnuplot: Update to 5.0.4. 
* gnu/packages/maths.scm (gnuplot): Update to 5.0.4.
 2016-07-21 13:56:51 +03:00
Efraim Flashner 873966e3e9
gnu: dovecot: Update to 2.2.25. 
* gnu/packages/mail.scm (dovecot): Update to 2.2.25.
 2016-07-21 13:56:13 +03:00
Efraim Flashner 132e14b4cc
gnu: texlive: Use https. 
* gnu/packages/tex.scm (texlive-bin, texlive-texmf, texlive)[license]:
Use 'https' in the url.
[home-page]: Use 'https' in the url.
 2016-07-21 12:56:17 +03:00
Efraim Flashner 29a56d8eaf
gnu: texlive: Update in-place source updates. 
* gnu/packages/tex.scm (texlive-texmf-source, texlive-bin)[source]:
Update to 20160523b.
 2016-07-21 12:46:12 +03:00
Leo Famulari d23d1ddf6e
gnu: msmtp: Update to 1.6.5. 
* gnu/packages/mail.scm (msmtp): Update to 1.6.5.
[source]: Update source URL.
 2016-07-21 01:43:01 -04:00
Eric Bavier 2908087013
gnu: superlu-dist: Remove non-free source. 
* gnu/packages/maths.scm (superlu-dist)[source]: Replace non-free
mc64ad.c source with stub.
 2016-07-20 21:16:25 -05:00
Eric Bavier 8787c555d9
gnu: slepc: Update to 3.7.1. 
* gnu/packages/maths.scm (slepc): Update to 3.7.1.
 2016-07-20 21:16:25 -05:00
Eric Bavier fafd623e49
gnu: petsc: Update to 3.7.2. 
* gnu/packages/maths.scm (petsc): Update to 3.7.2.
[arguments]: Adjust scrubbed files.
 2016-07-20 21:16:24 -05:00
Eric Bavier b730b43770
gnu: petsc: Make header generation reproducible. 
* gnu/packages/maths.scm (petsc)[arguments]: Scrub timestamp from
  petscmachineinfo.h header.
 2016-07-20 21:16:24 -05:00
Eric Bavier 64dcc28963
gnu: petsc: Use modify-phases. 
* gnu/packages/maths.scm (petsc)[arguments]: Use modify-phases.
 2016-07-20 21:16:24 -05:00
Eric Bavier 9474a4b3ec
gnu: openmpi: Make binaries reproducible. 
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove timestamps from
source files.  Delete installed configure logs.
 2016-07-20 21:16:24 -05:00
Eric Bavier 6876590fd4
gnu: openmpi: Update to 1.10.3. 
* gnu/packages/mpi.scm (openmpi): Update to 1.10.3.
[source]: Use https.
 2016-07-20 21:15:37 -05:00
Eric Bavier 995a09e055
gnu: superlu: Update to 5.2.1. 
* gnu/packages/maths.scm (superlu): Update to 5.2.1.
[source]: Remove non-free MC64 code.
[inputs]: Use openblas instead of lapack's BLAS.
[build-system]: Use cmake-build-system.
[arguments]: Remove custom phases and replace with CMake flags.
[license]: List additional licenses for some source and example files.
 2016-07-20 18:31:16 -05:00
Eric Bavier d721c83a63
gnu: Add libhilbert. 
* gnu/packages/maths.scm (libhilbert): New variable.
 2016-07-20 18:31:16 -05:00
Ricardo Wurmus cdf8f39195
gnu: Add allegro-5.0. 
* gnu/packages/game-development.scm (allegro-5.0): New variable.
 2016-07-20 22:19:34 +02:00
Ricardo Wurmus 19d311b4f2
gnu: Add allegro. 
* gnu/packages/game-development.scm (allegro): New variable.
 2016-07-20 22:19:34 +02:00
Efraim Flashner 5f01078129
gnu: julia: Build with zlib. 
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
 2016-07-20 11:37:01 +03:00
Efraim Flashner c23c628ea7
Revert "gnu: julia: Build with zlib." 
This reverts commit 95bf72eeb0.
 2016-07-20 11:37:01 +03:00
Efraim Flashner 95bf72eeb0
gnu: julia: Build with zlib. 
* gnu/packages/julia.scm (julia)[inputs]: Add zlib.
 2016-07-20 09:11:16 +03:00
Efraim Flashner 885fa1eec5
gnu: aria2: Update to 1.25.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.25.0.
 2016-07-20 06:49:44 +03:00
Ricardo Wurmus 909147e43f
services: Add pam-limits-service. 
* gnu/system/pam.scm (<pam-limits-entry>): New record type.
(pam-limits-entry, pam-limits-entry->string): New procedures.
* gnu/services/base.scm (pam-limits-service-type): New variable.
(pam-limits-service): New procedure.
* doc/guix.texi (Base Services): Document it.
 2016-07-19 23:50:03 +02:00
Ludovic Courtès 8e9ba611cb
gnu: atlas: Use @example in description. 
* gnu/packages/maths.scm (atlas)[description]: Use "@example".
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice d97c429a34
gnu: atlas: Use cpupower in description. 
* gnu/packages/maths.scm (atlas)[description]: Replace 'cpufreq-selector'
with its replacement 'cpupower --governor'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 58d6a1f227
gnu: Add cpupower. 
* gnu/packages/linux.scm (cpupower): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Tobias Geerinckx-Rice 592ccdd388
gnu: Add ssdeep. 
* gnu/packages/datastructures.scm (ssdeep): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 7fe3f8cf6e
gnu: mesa-utils: Update to 8.3.0. 
* gnu/packages/gl.scm (mesa-utils): Update to 8.3.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 3a92a5b36d
gnu: Order module imports in (gnu packages gl) alphabetically. 
* gnu/packages/gl.scm: Order module imports alphabetically.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
David Craven 584f2e1bc1
gnu: gl: Change 'l:' prefix to 'license:'. 
* gnu/packages/gl.scm: Change #:prefix l: to #:prefix license:.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-19 23:03:30 +02:00
Efraim Flashner aab76e80d2
gnu: python-pyquery: Update to 1.2.13. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.13.
 2016-07-19 21:07:37 +03:00
Efraim Flashner d5ccd9abf6
gnu: python-cssselect: Update to 0.9.2. 
* gnu/packages/python.scm (python-cssselect): Update to 0.9.2.
[source]: Use 'pypi-uri' format.
 2016-07-19 21:03:31 +03:00
Efraim Flashner 58d1d816ba
gnu: python2-cssutils: Update to 1.0.1. 
* gnu/packages/python.scm (python2-cssutils): Update to 1.0.1.
[source]: Use 'pypi-uri' format.
 2016-07-19 21:00:52 +03:00
Efraim Flashner 31e8a074c7
gnu: calibre: Update to 2.62.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.62.0.
 2016-07-19 20:47:25 +03:00
Efraim Flashner d58a32037e
gnu: python-lxml: Update to 3.6.0. 
* gnu/packages/python.scm (python-lxml): Update to 3.6.0.
 2016-07-19 20:11:32 +03:00
ng0 72fb1b24d9
gnu: Use HTTPS home-page URLs for PGP-related packages. 
* gnu/packages/gnupg.scm (gnupg, gpgme, libassuan, libgcrypt, libgpg-error,
libksba, npth, pius, python-gnupg, signing-party)[home-page]: Use HTTPS URLs.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-18 23:48:42 -04:00
ng0 f04a7943f4
gnu: libassuan: Update to 2.4.3. 
* gnu/packages/gnupg.scm (libassuan): Update to 2.4.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-18 23:46:32 -04:00
Eric Bavier 0935fb271b
gnu: llvm: Build without debugging symbols. 
* gnu/packages/llvm.scm (llvm)[arguments]: Add #:build-type.
 2016-07-18 20:28:21 -05:00
Eric Bavier 3b956a3392
gnu: llvm: Update to 3.8.1. 
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.8.1.
(llvm-3.7, clang-runtime-3.7, clang-3.7): New variables.
(clang-runtime-from-llvm)[arguments]: Disable tests, which were not
being run for previous versions anyhow but now fail hard.
(clang-from-llvm): Add #:patches keyword argument.
* gnu/packages/patches/clang-3.8-libc-search-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Dennis Mungai <dmngaie@gmail.scm>
 2016-07-18 20:28:21 -05:00
Eric Bavier 3ebc09057a
gnu: llvm: Update to 3.7.1. 
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 3.7.1
(llvm-3.6, clang-runtime-3.6, clang-3.6): New variables.
 2016-07-18 20:28:21 -05:00
Eric Bavier ee0774305f
gnu: llvm: Add libffi and zlib inputs. 
* gnu/packages/llvm.scm (llvm)[inputs]: Add libffi and zlib.
[arguments]: Add cmake flag for libffi to #:configure-flags.

Co-authored-by: Dennis Mungai <dmngaie@gmail.com>
 2016-07-18 20:28:21 -05:00
Eric Bavier ac00973cd9
gnu: llvm: Add "license:" prefix. 
* gnu/packages/llvm.scm: Import (guix licenses) with "license:" prefix.
 2016-07-18 20:28:21 -05:00
Eric Bavier a53c486dad
gnu: llvm: Update to 3.5.2. 
* gnu/packages/llvm.scm (llvm-3.5): Update to 3.5.2.
 2016-07-18 20:28:21 -05:00
Ludovic Courtès 2c2ec261a8
services: shepherd: Clarify error message about missing service. 
Suggested by Tobias Geerinckx-Rice <me@tobias.gr>.

* gnu/services/shepherd.scm (assert-valid-graph)[assert-satisfied-requirements]:
Clarify error message.
 2016-07-19 00:07:12 +02:00
Nicolas Goaziou a2d469afaf
gnu: giac-xcas: Update to 1.2.2-75. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-75.
 2016-07-18 22:39:09 +02:00
Leo Famulari 2d656a93db
Revert "gnu: gnutls: Fix test failure." 
This reverts commit 1d14bf9f5f.
 2016-07-18 12:47:18 -04:00
Mark H Weaver 273260646d
gnu: gd: Fix failing test on i686. 
* gnu/packages/patches/gd-fix-test-on-i686.patch: New file.
* gnu/local.mk (dist_PATCH_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Add the patch.
 2016-07-18 12:36:01 -04:00
Leo Famulari 1d14bf9f5f
gnu: gnutls: Fix test failure. 
* gnu/packages/patches/gnutls-fix-stale-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tls.scm (gnutls)[replacement]: New field.
(gnutls/fixed): New variable.
 2016-07-18 12:30:39 -04:00
Efraim Flashner 6aabc87d50
gnu: libinput: Update to 1.4.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.4.0.
 2016-07-18 14:49:49 +03:00
Efraim Flashner cff826ba05
gnu: efl: Use 'modify-phases'. 
* gnu/packages/enlightenment.scm (efl)[arguments]: Use 'modify-phases'.
 2016-07-18 14:40:55 +03:00
Efraim Flashner ebb365ed57
gnu: efl: Remove valgrind from inputs. 
* gnu/packages/enlightenment.scm (efl)[inputs]: Remove valgrind.
 2016-07-18 14:29:04 +03:00
Efraim Flashner cb277904a4
gnu: python-gst: Update to 1.8.2. 
* gnu/packages/gstreamer.scm (python-gst): Update to 1.8.2.
 2016-07-18 14:11:21 +03:00
Efraim Flashner 443975ae8e
gnu: gst-libav: Update to 1.8.2. 
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.8.2.
 2016-07-18 14:10:54 +03:00
Efraim Flashner 935742f38f
gnu: gst-plugins-ugly: Update to 1.8.2. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.8.2.
 2016-07-18 14:10:06 +03:00
Efraim Flashner 727a9a5bd4
gnu: gst-plugins-good: Update to 1.8.2. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.8.2.
 2016-07-18 14:09:36 +03:00
Efraim Flashner 0c19247cea
gnu: gst-plugins-base: Update to 1.8.2. 
* gnu/pakcages/gstreamer.scm (gst-plugins-base): Update to 1.8.2.
 2016-07-18 14:09:03 +03:00
Efraim Flashner ddaf9b1822
gnu: gstreamer: Update to 1.8.2. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.8.2.
 2016-07-18 14:08:26 +03:00
Ludovic Courtès b1bf155ffd
tests: install: Generalize 'run-install'. 
* gnu/tests/install.scm (%simple-installation-script): New variable.
Contains installation script formerly in 'run-install'.
(run-install): Add 'target-os', 'target-os-source', and #:script
parameters.  Honor them.
(qemu-command/writable-image): New procedure.
(%test-installed-os): Use it.
 2016-07-18 01:26:03 +02:00
Ludovic Courtès 2bdd7ac17c
system: Honor the 'dependencies' field of file systems. 
This allows mapped devices listed in 'dependencies' to be properly taken
into account.

Reported by Andreas Enge <andreas@enge.fr>.

* gnu/system.scm (mapped-device-user): Check whether DEVICE is a member
of the 'dependencies' of FS.
* tests/system.scm (%luks-device, %os-with-mapped-device): New variables.
("operating-system-user-mapped-devices")
("operating-system-boot-mapped-devices")
("operating-system-boot-mapped-devices, implicit dependency"): New tests.
 2016-07-18 01:26:03 +02:00
Tobias Geerinckx-Rice 0b07350675
gnu: Add xdelta. 
* gnu/packages/compression.scm (xdelta): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-18 01:26:03 +02:00
Ben Woodcroft 7593e50b26
gnu: diamond: Update to 0.8.15. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.15.
 2016-07-18 00:06:21 +10:00
Efraim Flashner 67eb38572f
gnu: hoedown: Update to 3.0.7. 
* gnu/packages/markdown.scm (hoedown): Update to 3.0.7.
 2016-07-17 16:20:47 +03:00
Efraim Flashner 8400ba2125
gnu: stalonetray: Update to 0.8.3. 
* gnu/packages/stalonetray.scm (stalonetray): Update to 0.8.3.
 2016-07-17 16:14:46 +03:00
Efraim Flashner 988d1bad7b
gnu: python-simplejson: Update to 3.8.2. 
* gnu/packages/python.scm (python-simplejson): Update to 3.8.2.
[source]: Use 'pypi-uri' format.
 2016-07-17 15:16:19 +03:00
Efraim Flashner 287cfd1a08
gnu: behave: Update to 1.2.5. 
* gnu/packages/python.scm (behave): Update to 1.2.5.
[source]: Use 'pypi-uri' format.
 2016-07-17 15:15:03 +03:00
Efraim Flashner 4d4cf3dd99
gnu: python-coverage: Update to 4.1. 
* gnu/packages/python.scm (python-coverage): Update to 4.1.
 2016-07-17 15:15:03 +03:00
Ricardo Wurmus 2c0d8e0d09
gnu: eigensoft: Do not refer to "lapacke" output. 
* gnu/packages/bioinformatics.scm (eigensoft)[inputs]: Remove reference
  to non-existing "lapacke" output.
 2016-07-17 12:04:04 +02:00
Ricardo Wurmus 7b569b01d3
gnu: lapack: Build the LAPACKE library. 
* gnu/packages/maths.scm (lapack)[arguments]: Add "-DLAPACKE=ON".
 2016-07-17 11:09:31 +02:00
Ricardo Wurmus 012c8b3552
gnu: Add emacs-solarized-theme. 
* gnu/packages/emacs.scm (emacs-solarized-theme): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 480f7350d9
gnu: Add emacs-perspective. 
* gnu/packages/emacs.scm (emacs-perspective): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus e203221f50
gnu: Add emacs-tagedit. 
* gnu/packages/emacs.scm (emacs-tagedit): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 3bcb304ea8
gnu: Add emacs-shell-switcher. 
* gnu/packages/emacs.scm (emacs-shell-switcher): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus dbe38a3a58
gnu: Add emacs-undercover. 
* gnu/packages/emacs.scm (emacs-undercover): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 1f9a709710
gnu: Add emacs-shut-up. 
* gnu/packages/emacs.scm (emacs-shut-up): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus b33f913d9c
gnu: Add emacs-smart-mode-line. 
* gnu/packages/emacs.scm (emacs-smart-mode-line): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 8d81016344
gnu: Add emacs-rich-minority. 
* gnu/packages/emacs.scm (emacs-rich-minority): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 6c04acaa6e
gnu: Add emacs-skewer-mode. 
* gnu/packages/emacs.scm (emacs-skewer-mode): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 1f8a951bf4
gnu: Add emacs-simple-httpd. 
* gnu/packages/emacs.scm (emacs-simple-httpd): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus a46e3c0dc6
gnu: Add emacs-page-break-lines. 
* gnu/packages/emacs.scm (emacs-page-break-lines): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 07046e5f44
gnu: Add emacs-paren-face. 
* gnu/packages/emacs.scm (emacs-paren-face): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 7b9769b04d
gnu: Add emacs-znc. 
* gnu/packages/emacs.scm (emacs-znc): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 655684468e
gnu: Add emacs-fill-column-indicator. 
* gnu/packages/emacs.scm (emacs-fill-column-indicator): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus d0e4378266
gnu: Add emacs-expand-region. 
* gnu/packages/emacs.scm (emacs-expand-region): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 0c5d837c82
gnu: Add emacs-espuds. 
* gnu/packages/emacs.scm (emacs-espuds): New variable.
 2016-07-17 11:04:45 +02:00
Ricardo Wurmus 1c32830b7d
gnu: Add emacs-el-mock. 
* gnu/packages/emacs.scm (emacs-el-mock): New variable.
 2016-07-17 11:04:45 +02:00
Efraim Flashner a228579883
gnu: Add rlwrap. 
* gnu/packages/readline.scm (rlwrap): New variable.
 2016-07-17 08:56:03 +03:00
Alex Griffin 334c00f2bc
gnu: Add reptyr. 
* gnu/packages/screen.scm (reptyr): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-16 20:00:53 -04:00
Leo Famulari a1537ac2ba
gnu: gd: Fix CVE-2016-{5766,6128,6132,6214}. 
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gd.scm (gd): Use patches.
 2016-07-16 12:49:22 -04:00
Leo Famulari b9174ff449
gnu: gd: Update to 2.2.2 [fixes CVE-2016-{5767,6161}]. 
* gnu/packages/gd.scm (gd): Update to 2.2.2.
 2016-07-16 12:49:21 -04:00
Leo Famulari e31f05d435
gnu: pidgin: Update to 2.11.0 [security fixes]. 
Fixes CVE-2016-{2365,2366,2367,2368,2369,2370,2371,2372,2373,2374,2375,2376,
2377,2378,2379,2380,4323}.

* gnu/packages/messaging.scm (pidgin): Update to 2.11.0.
 2016-07-16 11:54:20 -04:00
Ricardo Wurmus 12356eb8b0
gnu: geda-gaf: Update to 1.9.2. 
* gnu/packages/engineering.scm (geda-gaf): Update to 1.9.2.
 2016-07-16 17:19:26 +02:00
Ricardo Wurmus 2352c97df4
gnu: geda-gaf: Use modify-phases syntax. 
* gnu/packages/engineering.scm (geda-gaf)[arguments]: Use modify-phases
  syntax.
 2016-07-16 17:19:22 +02:00
Tobias Geerinckx-Rice fb8a5d633a
gnu: Add encfs. 
* gnu/packages/crypto.scm (rlog, encfs): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-16 14:41:39 +02:00
Ludovic Courtès b9bb50c608
services: dbus: Synchronize startup using dbus-daemon's PID file. 
* gnu/services/dbus.scm (dbus-shepherd-service): Pass #:pid-file to
'make-forkexec-constructor'.
 2016-07-16 14:41:39 +02:00
Andreas Enge ee6a5d0e3e
gnu: lm-sensors: Add alternate source URL. 
* gnu/packages/linux.scm (lm-sensors)[source]: Add URL.
 2016-07-15 19:18:36 +02:00
Leo Famulari 2d74d94b17 gnu: borg: Update to 1.0.6. 
* gnu/packages/backup.scm (borg): Update to 1.0.6.
[source]: Use pypi-uri.
 2016-07-15 12:20:29 -04:00
David Craven 71b0601a97
services: Add 'dropbear-service'. 
* gnu/services/ssh.scm (<dropbear-configuration>): New record type.
(dropbear-activation, dropbear-shepherd-service, dropbear-service): New
procedures.
(dropbear-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-15 17:57:28 +02:00
David Craven 2102ae2e30
gnu: lsh: Move to (gnu packages ssh) 
* gnu/packages/lsh.scm: Remove.  Move 'lsh and liboop' to...
* gnu/packages/ssh.scm (liboop, lsh): ... here.  New variables.
* gnu/services/ssh.scm, gnu/services/base.scm: Adjust accordingly.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-15 17:57:28 +02:00
Leo Famulari e538a245f3
gnu: diffoscope: Update to 54. 
* gnu/packages/package-management.scm (diffoscope): Update to 54.
 2016-07-15 11:40:02 -04:00
Tobias Geerinckx-Rice 7fb18f578a
gnu: Import (guix licenses) with #:prefix. 
* gnu/packages/crypto.scm: Add 'license:' #:prefix for (guix licenses).

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-07-15 14:31:37 +02:00
Andreas Enge e05647add7
Update e-mail address for Tobias Geerinckx-Rice. 
* .mailmap: Add Tobias Geerinckx-Rice.
* gnu/packages/disk.scm: Replace "tobias.geerinckx.rice@gmail.com" with
"me@tobias.gr".
* gnu/packages/linux.scm: Likewise.
* gnu/packages/networking.scm: Likewise.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2016-07-15 14:29:22 +02:00
Andreas Enge f0fbf2c11c
install: Add mdadm to the image. 
* gnu/system/install.scm (installation-os)[packages]: Add mdadm.
 2016-07-15 10:41:14 +02:00
Alex Vong 9ce2a95c30
gnu: racket: Update to 6.5. 
* gnu/packages/scheme.scm (racket): Update to 6.5.

Signed-off-by: Andreas Enge <andreas@enge.fr>
 2016-07-15 10:31:02 +02:00
Leo Famulari f0344d9369
gnu: git: Update to 2.9.1. 
* gnu/packages/version-control.scm (git): Update to 2.9.1.
(git-manpages)[source]: Update hash.
 2016-07-14 16:58:55 -04:00
Ricardo Wurmus 6619f9c769
gnu: Add eigensoft. 
* gnu/packages/bioinformatics.scm (eigensoft): New variable.
 2016-07-14 08:58:35 +02:00
Efraim Flashner 42d6d0d0d6
gnu: python-setuptools-scm: Update to 1.11.1. 
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.11.1.
 2016-07-14 05:51:03 +03:00
Ludovic Courtès 2d94702ff4
system: Change the shell of 'nobody' to 'nologin'. 
Fixes <http://bugs.gnu.org/23971>.
Reported by Vincent Legoll <vincent.legoll@gmail.com>.

* gnu/system/shadow.scm (%base-user-accounts): Add 'shell' field.  Set
'home-directory' to "/nonexistent".
 2016-07-13 23:42:35 +02:00
Jan Nieuwenhuizen 4c7260011e
gnu: grub: Update to 2.02~beta3. 
* gnu/packages/grub.scm (grub): Update to 2.02~beta3.
[arguments]: Modify tests/grub_func_test.in in 'patch-stuff' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-13 23:26:04 +02:00
Ludovic Courtès 66f8f5f9c3
gnu: screen: Remove unneeded configure flags. 
* gnu/packages/screen.scm (screen)[arguments]: Remove --infodir and
--mandir, which are no longer needed.
 2016-07-13 23:26:04 +02:00
George Clemmer a7e7981c7d
gnu: screen: Support 256 colors. 
* gnu/packages/screen.scm (screen)[arguments]: Pass --enable-colors256.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-13 23:26:04 +02:00
Mark H Weaver 7a7d6b2bde
gnu: linux-libre: Update to 4.6.4. 
* gnu/packages/linux.scm (linux-libre): Update to 4.6.4.
 2016-07-12 22:09:08 -04:00
Mark H Weaver 8f1488c639
gnu: linux-libre-4.4: Update to 4.4.15. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.15.
 2016-07-12 22:08:58 -04:00
Jan Nieuwenhuizen abba1d087e
gnu: Add gptfdisk. 
* gnu/packages/disk.scm (gptfdisk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-07-13 00:32:21 +02:00
Ludovic Courtès bdff55eac3
gnu: emacs-flycheck: Add missing dependency on emacs-seq. 
Fixes a regression introduced in
afb6fdaa5d.

* gnu/packages/emacs.scm (flycheck)[propagated-inputs]: Add EMACS-SEQ.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès c1629416d8
gnu: Remove unneeded 'imported-modules' fields for 'origin'. 
* gnu/packages/engineering.scm (fastcap)[source](modules,
imported-modules): Remove.
* gnu/packages/wm.scm (awesome)[source](imported-modules): Remove.
* tests/packages.scm ("package-source-derivation, snippet"): Remove
'imported-modules' field.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès a91c3fc727
services: <shepherd-service> no longer has an 'imported-modules' field. 
* gnu/services/shepherd.scm (<shepherd-service>)[imported-modules]:
Remove.
(%default-imported-modules): Make private.
(shepherd-service-file): Use 'with-imported-modules'.
(shepherd-configuration-file): Remove 'modules' and the calls to
'imported-modules' and 'compiled-modules'.  Use
'with-imported-modules' instead.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu/services/base.scm (file-system-shepherd-service): Use
'with-imported-modules'.  Remove 'imported-modules' field.
* gnu/system/mapped-devices.scm (device-mapping-service-type): Remove
'imported-modules'.
(open-luks-device): Use 'with-imported-modules'.
* gnu/tests.scm (marionette-shepherd-service): Remove 'imported-modules'
field and use 'with-imported-modules'.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès fd12989398
gnu: Use 'gexp->file' in conjunction with 'with-imported-modules'. 
* gnu/services.scm (activation-script): Remove code to set '%load-path'
and use 'with-imported-modules' instead.
(cleanup-gexp): Likewise.
* gnu/system/vm.scm (%vm-module-closure): New variable.
(expression->derivation-in-linux-vm): Remove #:modules.
[loader]: Remove code to set '%load-path'.
[builder]: Use %VM-MODULE-CLOSURE.
(qemu-image): Use 'with-imported-modules'.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès 2b4185792d
gexp: 'gexp->file' emits code to set '%load-path'. 
* guix/gexp.scm (gexp->file): Add #:set-load-path? parameter and honor it.
* gnu/system.scm (operating-system-parameters-file): Pass
  #:set-load-path? #f.
* doc/guix.texi (G-Expressions): Adjust accordingly.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès 43dcce8674
linux-container: Fix list of imported modules. 
This fixes a regression introduced in
958dd3ce68.

* gnu/system/linux-container.scm (container-script)[script]: Add (guix
combinators) to the list of imported modules.
 2016-07-12 22:47:08 +02:00
Ludovic Courtès 4ee96a7912
gnu: Switch to 'with-imported-modules'. 
* gnu/services.scm (directory-union): Use 'with-imported-modules'
instead of the '#:modules' argument of 'computed-file'.
* gnu/services/base.scm (udev-rules-union): Likewise.
* gnu/services/dbus.scm (system-service-directory): Likewise.
* gnu/services/desktop.scm (wrapped-dbus-service):
(polkit-directory): Likewise.
* gnu/services/networking.scm (tor-configuration->torrc): Likewise.
* gnu/services/xorg.scm (xorg-configuration-directory): Likewise.
* gnu/system/install.scm (self-contained-tarball): Likewise.
* gnu/system/linux-container.scm (container-script): Likewise.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and
remove #:modules parameter.
(flat-linux-module-directory): Use 'with-imported-modules'.
(base-initrd): Likewise.
* gnu/system/locale.scm (locale-directory): Likewise.
* gnu/system/shadow.scm (default-skeletons): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
* gnu/tests/base.scm (run-basic-test): Likewise.
* gnu/tests/install.scm (run-install): Likewise.
* doc/guix.texi (Initial RAM Disk): Update 'expression->initrd'
documentation.
 2016-07-12 22:47:08 +02:00
Efraim Flashner 08858812b5
gnu: obs: Remove compiler flags for non-Intel hardware. 
* gnu/packages/video.scm (obs)[arguments]: If compiling for arm or mips
devices then don't add Intel specific compiler flags.
 2016-07-12 18:14:22 +03:00
Ricardo Wurmus 17dc32a400
gnu: Add Ribotaper. 
* gnu/packages/bioinformatics.scm (ribotaper): New variable.
 2016-07-12 12:19:39 +02:00
Ricardo Wurmus 9a8f309cf1
gnu: Add bedtools-2.18. 
* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
 2016-07-12 12:19:15 +02:00
Efraim Flashner 34c553b07e
gnu: xscreensaver: Update to 5.35. 
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.35.
 2016-07-12 10:34:43 +03:00
Efraim Flashner 46cd684e2c
gnu: sxhkd: Update to 0.5.6. 
* gnu/packages/xdisorg.scm (sxhkd): Update to 0.5.6.
 2016-07-12 09:59:10 +03:00
Efraim Flashner 1f1e620f88
gnu: mtdev: Update to 1.1.5. 
* gnu/packages/xdisorg.scm (mtdev): Update to 1.1.5.
 2016-07-12 09:45:07 +03:00
Efraim Flashner af2b0b1507
gnu: libxkbcommon: Update to 0.6.1. 
* gnu/packages/xdisorg.scm (libxkbcommon): Update to 0.6.1.
 2016-07-12 09:34:24 +03:00
Efraim Flashner 16d8f9beb5
gnu: arandr: Update to 0.1.9. 
* gnu/packages/xdisorg.scm (arandr): Update to 0.1.9.
 2016-07-12 09:29:57 +03:00
Leo Famulari 6dc4d4655e
gnu: mpd: Update to 0.19.17. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.17.
 2016-07-12 01:54:47 -04:00
Ben Woodcroft 51d8039b4a
gnu: parallel: Update to 20160622. 
* gnu/packages/parallel.scm (parallel): Update to 20160622.
 2016-07-12 14:47:50 +10:00
Matthew Jordan cdd8e0776e
gnu: Add Tmux Themepack. 
* gnu/packages/tmux.scm (tmux-themepack): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-10 15:18:17 -04:00
Efraim Flashner 8ac012d0ca
gnu: help2man: Update to 1.47.4. 
* gnu/packages/man.scm (help2man): Update to 1.47.4.
 2016-07-10 21:34:37 +03:00
Efraim Flashner c635ff8369
gnu: man-pages: Update to 4.0.6. 
* gnu/packages/man.scm (man-pages): Update to 4.0.6.
 2016-07-10 21:34:37 +03:00
Efraim Flashner dfce38993e
gnu: man-db: Update to 2.7.5. 
* gnu/packages/man.scm (man-db): Update to 2.7.5.
 2016-07-10 21:34:37 +03:00
Efraim Flashner cf1dc4b7e6
gnu: obs: Update to 0.15.1. 
* gnu/packages/video.scm (obs): Update to 0.15.1.
 2016-07-10 21:34:37 +03:00
Efraim Flashner 5e3f68e67c
gnu: libbluray: Update to 0.9.3. 
* gnu/packages/video.scm (libbluray): Update to 0.9.3.
 2016-07-10 21:34:37 +03:00
Ricardo Wurmus 0e6ee10c07
gnu: libmtp: Update to 1.1.11. 
* gnu/packages/patches/libmtp-devices.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
 2016-07-10 18:02:04 +02:00
Ben Woodcroft 7f575d3e56
gnu: diamond: Update to 0.8.12. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
 2016-07-10 22:32:57 +10:00
Alex Griffin 0e74bb5bd6
gnu: Add gnome-mpv. 
* gnu/packages/video.scm (gnome-mpv): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-10 07:11:08 +03:00
Alex Griffin 6cf83e3f83
gnu: mpv: Enable shared library support. 
* gnu/packages/video.scm (mpv): Enable shared library support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2016-07-10 07:10:55 +03:00
Efraim Flashner 9d5448f35f
gnu: ccache: Update to 3.2.5. 
* gnu/packages/ccache.scm (ccache): Update to 3.2.5.
[native-inputs]: Add which.
 2016-07-10 06:48:27 +03:00
Efraim Flashner e9fd10a83b
gnu: ldb: Update to 1.1.26. 
* gnu/packages/samba.scm (ldb): Update to 1.1.26.
 2016-07-10 06:48:27 +03:00
Efraim Flashner ea26457dad
gnu: tevent: Update to 0.9.28. 
* gnu/packages/samba.scm (tevent): Update to 0.9.28.
 2016-07-10 06:48:27 +03:00
Efraim Flashner 67e7452dda
gnu: talloc: Update to 2.1.7. 
* gnu/packages/samba.scm (talloc): Update to 2.1.7.
 2016-07-10 06:48:27 +03:00
Efraim Flashner 8b21d22d6a
gnu: samba: Update to 4.3.11 [fixes CVE-2016-2119]. 
* gnu/packages/samba.scm (samba): Update to 4.3.11.
 2016-07-10 06:48:27 +03:00
Leo Famulari 1a6d3d2df7
gnu: dropbear: Update to 2016.73. 
* gnu/packages/ssh.scm (dropbear): Update to 2016.73.
 2016-07-09 19:38:36 -04:00
Danny Milosavljevic a502dfbf4c
gnu: Add python-jedi. 
* gnu/packages/python.scm (python-jedi, python2-jedi): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-09 14:12:14 -04:00
Ben Woodcroft ec2a67de88
gnu: Add python-dendropy. 
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-07-09 08:00:34 +10:00
Ben Woodcroft c11f79a49e
gnu: star: Restrict supported systems to 64-bit systems. 
* gnu/packages/bioinformatics.scm (star)[supported-systems]: Restrict to
x86_64-linux and mips64el-linux.
 2016-07-08 22:10:05 +10:00
Leo Famulari 71ca053928
gnu: rxvt-unicode: Update to 9.22. 
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.22.
 2016-07-07 20:46:29 -04:00
ng0 6c12abbdb2
services: nginx: Fix typo. 
* gnu/services/web.scm (nginx-service): Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-07 20:42:58 -04:00
John J. Foerch 614023981a
gnu: Add di. 
* gnu/packages/admin.scm (di): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-07-07 20:38:49 -04:00
Efraim Flashner 1a5fd02a82
gnu: getmail: Update to 4.49.0. 
* gnu/packages/mail.scm (getmail): Update to 4.49.0.
 2016-07-07 20:02:11 +03:00
Efraim Flashner a0b15f5eef
gnu: python-pyusb: Update to 1.0.0. 
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.0.
 2016-07-07 19:59:25 +03:00
Efraim Flashner 6b810897a0
gnu: python-websocket-client: Update to 0.37.0. 
* gnu/packages/python.scm (python-websocket-client): Update to 0.37.0.
[source]: Use pypi uri format.
 2016-07-07 19:44:11 +03:00
Efraim Flashner 697e86ddca
gnu: ansible: Update to 2.1.0.0. 
* gnu/packages/admin.scm (ansible): Update to 2.1.0.0.
[source]: Use pypi format.
 2016-07-07 18:59:28 +03:00
Efraim Flashner 88535a4453
gnu: python-psutil: Update to 4.3.0. 
* gnu/packages/python.scm (python-psutil): Update to 4.3.0.
[home-page]: Update home-page.
 2016-07-07 17:38:20 +03:00
Ben Woodcroft d285657eae
gnu: bedtools: Update to 2.26.0. 
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
 2016-07-07 23:27:19 +10:00
Ben Woodcroft 7c7643a7f0
gnu: diamond: Update to 0.8.11. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
 2016-07-07 18:21:10 +08:00
Efraim Flashner 0b166a7559
gnu: quassel: Build with modular qt. 
* gnu/packages/irc.scm (quassel)[inputs]: Remove qt, add qtbase,
qttools, qtscript.
[arguments]: Disable webkit.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 5f2074ca66
gnu: snorenotify: Build with modular qt. 
* gnu/packages/kde.scm (snorenotify)[inputs]: Remove qt, add qtbase, qttools.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 05b9c00e59
gnu: qca: Build with qtbase. 
* gnu/packages/kde.scm (qca)[inputs]: Remove qt, add qtbase.
 2016-07-07 12:23:39 +03:00
Efraim Flashner 4742c4decc
gnu: Add qtscript. 
* gnu/packages/qt.scm (qtscript): New variable.
 2016-07-07 12:23:39 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc. 
* gnu/packages/statistics.scm (r-domc): New variable.
 2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper. 
* gnu/packages/statistics.scm (r-multitaper): New variable.
 2016-07-07 10:46:30 +02:00
Ricardo Wurmus 274da826f9
gnu: Add r-seqinr. 
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
 2016-07-07 10:46:17 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4. 
* gnu/packages/statistics.scm (r-ade4): New variable.
 2016-07-07 10:46:05 +02:00
Efraim Flashner 939cf41c3f
gnu: python-oslosphinx: Update to 4.3.0. 
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.3.0.
 2016-07-07 06:54:06 +03:00
Efraim Flashner 8157af2e09
gnu: khmer: Limit to x86_64 systems only. 
* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
 2016-07-07 06:33:28 +03:00
Leo Famulari 25a814ceab
gnu: httpd: Update to 2.4.23. 
Fixes CVE-2016-4979.

* gnu/packages/web.scm (httpd): Update to 2.4.23.
 2016-07-06 14:37:46 -04:00
Efraim Flashner 15ca556bbc
gnu: pumpa: Remove extra input. 
* gnu/packages/pumpio.scm (pumpa)[inputs]: Remove qjson.
 2016-07-06 21:22:36 +03:00
Roel Janssen 8f82641ac9
gnu: Add emacs-hl-todo. 
* gnu/packages/emacs.scm (emacs-hl-todo): New variable.
 2016-07-06 19:02:13 +02:00
Roel Janssen 41184943ae
gnu: Add emacs-ess. 
* gnu/packages/emacs.scm (emacs-ess): New variable.
 2016-07-06 13:25:50 +02:00
Ricardo Wurmus 26112c0abb
gnu: python-numexpr: Update to 2.6.0. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.0.
 2016-07-06 12:02:18 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs. 
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite. 
* gnu/packages/statistics.scm (r-svglite): New variable.
 2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools. 
* gnu/packages/statistics.scm (r-gdtools): New variable.
 2016-07-06 15:17:29 +08:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-07-06 07:28:09 +03:00
Efraim Flashner fda746b198
gnu: menu-cache: Update to 1.0.1. 
* gnu/packages/lxde.scm (menu-cache): Update to 1.0.1.
 2016-07-05 22:36:13 +03:00
Efraim Flashner d78c952dfd
gnu: lxtask: Update to 0.1.7. 
* gnu/packages/lxde.scm (lxtask): Update to 0.1.7.
 2016-07-05 22:33:20 +03:00