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Author SHA1 Message Date
Ben Woodcroft 1b6f5475a1
gnu: Enable tests for ruby-multi-json. 
* gnu/packages/ruby.scm (ruby-multi-json)[version]: Update to 1.13.1.
[source]: Switch to GitHub, so that the tests can be run.
[arguments]: Enable running the tests, and add a patch to fix an issue running
the tests.
[native-inputs]: Add native-inputs required for running the tests.
[home-page]: Use HTTPS.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2018-09-16 18:29:45 +01:00
Ben Woodcroft ed4b6b1840
gnu: Add ruby-oj. 
* gnu/packages/ruby.scm (ruby-oj): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2018-09-16 18:29:45 +01:00
Ben Woodcroft 2db0f9c82d
gnu: Add ruby-yajl-ruby. 
* gnu/packages/ruby.scm (ruby-yajl-ruby): New variable.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2018-09-16 18:29:45 +01:00
Roel Janssen cbb1b16865
admin: python-pyudev: Add dependency on python-six. 
* gnu/packages/admin.scm (python-pyudev): Add dependency on python-six.
 2018-09-15 21:26:50 +02:00
Julien Lepiller 636579210f
gnu: php: Update to 7.2.10. 
* gnu/packages/php.scm (php): Update to 7.2.10.
 2018-09-15 21:06:08 +02:00
Rutger Helling e8079dd9e4
gnu: wine-staging: Update to 3.16. 
* gnu/packages/wine.scm (wine-staging): Update to 3.16.
 2018-09-15 15:09:01 +02:00
Rutger Helling b947c614df
gnu: wine-staging-patchset-data: Update to 3.16. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.16.
 2018-09-15 15:09:01 +02:00
Rutger Helling 85a349787b
gnu: wine: Update to 3.0.3. 
* gnu/packages/wine.scm (wine): Update to 3.0.3.
 2018-09-15 15:09:00 +02:00
Tobias Geerinckx-Rice 4be83af427
gnu: gambit-c: Update to 4.9.0. 
The tests makefile still contains the offending lines, but I was unable
to reproduce the failure across 3 different machines.

* gnu/packages/scheme.scm (gambit-c): Update to 4.9.0.
[arguments]: Remove 'fix-tests' phase.
 2018-09-15 12:15:28 +02:00
Tobias Geerinckx-Rice 4e9832dd38
gnu: gambit-c: Update home page. 
* gnu/packages/scheme.scm (gambit-c)[home-page]: Update.
 2018-09-15 12:15:05 +02:00
Maxim Cournoyer 511f3be695
gnu: Add python-user-agents. 
* gnu/packages/python.scm (python-user-agents, python2-user-agents): New
variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Maxim Cournoyer 2ee67781ff
gnu: Add python-ua-parser. 
* gnu/packages/python.scm (python-ua-parser, python2-ua-parser): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Maxim Cournoyer 935d5ceb9b
gnu: Add python-pycountry. 
* gnu/packages/python.scm (python-pycountry, python2-pycountry): New variables.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 12:19:06 +08:00
Tobias Geerinckx-Rice 021b42f5e7
gnu: zsh: Update to 5.6.2. 
* gnu/packages/shells.scm (zsh): Update to 5.6.2.
 2018-09-15 05:17:51 +02:00
Tobias Geerinckx-Rice 81fb037f5a
gnu: libetpan: Use HTTPS home page. 
* gnu/packages/mail.scm (libetpan)[home-page]: Use HTTPS.
 2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 483be9bda6
gnu: ocaml-ounit: Update to 2.0.8. 
* gnu/packages/ocaml.scm (ocaml-ounit): Update to 2.0.8.
 2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 3319817174
gnu: pybind11: Update to 2.2.4. 
* gnu/packages/python.scm (pybind11): Update to 2.2.4.
 2018-09-15 05:17:50 +02:00
Tobias Geerinckx-Rice 5c34d97187
gnu: pybind11: Don't use unstable tarball. 
* gnu/packages/python.scm (pybind11)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-15 05:17:50 +02:00
Maxim Cournoyer 61853b7447
gnu: libjpeg: Improve description. 
* gnu/packages/image.scm (libjpeg)[description]: Add the list of the programs
it provides.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-09-15 10:49:50 +08:00
Tobias Geerinckx-Rice 25bc6370a4
gnu: snakemake: Update to 5.2.4. 
* gnu/packages/python.scm (snakemake): Update to 5.2.4.
[propagated-inputs]: Add python-gitpython.
 2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice bbe2a94799
gnu: libsigrokdecode: Update to 0.5.2. 
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.2.
 2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice 9f1b186afc
gnu: libetpan: Update to 1.9.1. 
* gnu/packages/mail.scm (libetpan): Update to 1.9.1.
 2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice aae96f8fac
gnu: libetpan: Don't use unstable tarball. 
* gnu/packages/mail.scm (libetpan)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-15 03:38:31 +02:00
Tobias Geerinckx-Rice f9fe94c1f6
gnu: emacs-magit-popup: Don't use unstable tarball. 
* gnu/packages/emacs.scm (emacs-magit-popup)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice e1bf455cee
gnu: emacs-magit-popup: Update to 2.12.4. 
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.4.
 2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice 49c941b43b
gnu: libmwaw: Update to 0.3.14. 
* gnu/packages/libreoffice.scm (libmwaw): Update to 0.3.14.
 2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice 002d73a01f
gnu: libwps: Update to 0.4.10. 
* gnu/packages/libreoffice.scm (libwps): Update to 0.4.10.
 2018-09-15 03:38:30 +02:00
Tobias Geerinckx-Rice c924fe38dc
gnu: umoci: Update to 0.4.2. 
* gnu/packages/virtualization.scm (umoci): Update to 0.4.2.
 2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice 56f3b85bd3
gnu: python-iso8601: Update to 0.1.12. 
* gnu/packages/time.scm (python-iso8601): Update to 0.1.12.
 2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice ed017a78be
gnu: coq: Update to 8.8.1. 
* gnu/packages/ocaml.scm (coq): Update to 8.8.1.
 2018-09-15 03:36:36 +02:00
Tobias Geerinckx-Rice 1d7cc6841e
gnu: coq: INVOKE. 
* gnu/packages/ocaml.scm (coq)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-09-15 03:36:35 +02:00
Leo Famulari 9e9e5d5a26
gnu: OpenSSL 1.1: Update to 1.1.1. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1.
[arguments]: Patch a `/usr/bin/env` invocation in the 'config' script.
Adjust the documentation output.
* gnu/packages/patches/openssl-1.1.0-c-rehash-in.patch: Rename and ...
* gnu/packages/patches/openssl-1.1-c-rehash-in.patch: ... adjust patch.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-09-14 16:51:49 -04:00
Danny Milosavljevic e830c9d0b0
gnu: Rename "banana-pi" to "bananapi". 
* gnu/bootloader/u-boot.scm (u-boot-banana-pi-m2-ultra-bootloader): Rename
to...
(u-boot-bananapi-m2-ultra-bootloader): ...this.
* gnu/packages/bootloaders.scm (u-boot-banana-pi-m2-ultra): Rename to...
(u-boot-bananapi-m2-ultra): ...this.
* gnu/system/install.scm (banana-pi-m2-ultra-installation-os): Rename to...
(bananapi-m2-ultra-installation-os): ...this.
 2018-09-14 21:31:24 +02:00
Ricardo Wurmus 7a20877a18
gnu: python-llvmlite: Remove obsolete patch. 
* gnu/packages/llvm.scm (python-llvmlite)[inputs]: Remove patch that is
obsolete since the upgrade to LLVM 6.0.1.
 2018-09-14 15:12:03 +02:00
Eric Brown daa6036fda
gnu: Add openblas-ilp64. 
* gnu/packages/maths.scm (openblas-ilp64): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-14 11:23:07 +02:00
Ricardo Wurmus 1dd153b3aa
gnu: Add python-hic2cool. 
* gnu/packages/bioinformatics.scm (python-hic2cool): New variable.
 2018-09-14 09:15:49 +02:00
pimi 03c95f0414
gnu: Add r-abps. 
* gnu/packages/cran.scm (r-abps): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-14 07:46:19 +02:00
pimi 016cabf7be
gnu: Add r-abodoutlier. 
* gnu/packages/cran.scm (r-abodoutlier): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-14 07:46:19 +02:00
Danny Milosavljevic 317b139c5d
gnu: rust: Update to 1.27.2. 
* gnu/packages/rust.scm (rust): Update to 1.27.2.
 2018-09-13 22:37:55 +02:00
pimi b6afe7b7f5
gnu: Add r-abnormality. 
* gnu/packages/cran.scm (r-abnormality): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 22:16:01 +02:00
Tobias Geerinckx-Rice f0314f65df
gnu: Add perl-devel-checklib. 
* gnu/packages/perl.scm (perl-devel-checklib): New public variable.
 2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 7ec4f648e5
gnu: sg3_utils: Mark up description. 
* gnu/packages/scsi.scm (sg3_utils)[description]: Use @dfn{}.
Wrap commands in @command{} rather than @code{}, and @itemize them.
 2018-09-13 19:53:08 +02:00
Tobias Geerinckx-Rice 581b6f5e96
gnu: sudo: Update to 1.8.25p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.25p1.
 2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 0b0b43ed7a
gnu: youtube-viewer: Update to 3.4.1. 
* gnu/packages/video.scm (youtube-viewer): Update to 3.4.1.
 2018-09-13 19:53:07 +02:00
Tobias Geerinckx-Rice 6be445785a
gnu: youtube-viewer: Don't use unstable tarball. 
* gnu/packages/video.scm (youtube-viewer)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-09-13 19:53:07 +02:00
Leo Famulari 7d1cc61293
Revert "gnu: libinput: Update to 1.12.0." 
Libinput-minimal has a lot of dependent packages, and this isn't reported by
`guix refresh --list-dependent`. We'll save this commit for another time.

This reverts commit 38dc3d6f17.
 2018-09-13 13:28:10 -04:00
pimi ebb3cdb1ea
gnu: Add r-abjutils. 
* gnu/packages/cran.scm (r-abjutils): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:18:47 +02:00
pimi 1efcd0f1ea
gnu: Add r-abhgenotyper. 
* gnu/packages/cran.scm (r-abhgenotyper): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:13:43 +02:00
Manuel Graf ae72b8f55b
gnu: Add ClusterShell. 
* gnu/packages/ssh.scm (clustershell): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-09-13 19:12:25 +02:00
Leo Famulari 38dc3d6f17
gnu: libinput: Update to 1.12.0. 
* gnu/packages/freedesktop.scm (libinput): Update to 1.12.0.
 2018-09-13 13:08:24 -04:00
pimi ef26400b66
gnu: Add r-abf2. 
gnu/packages/cran.scm (r-abf2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 19:05:35 +02:00
Efraim Flashner f21967a44b
gnu: retroarch: Fix building on armhf-linux. 
* gnu/packages/emulators.scm (retroarch)[arguments]: Add custom flags
when building for armhf-linux.
 2018-09-13 18:40:32 +03:00
Efraim Flashner fade67ab75
gnu: retroarch: Use shared zlib. 
* gnu/packages/emulators.scm (retroarch)[arguments]: In custom
'configure phase, use our zlib instead of vendor's zlib.
 2018-09-13 18:40:30 +03:00
Danny Milosavljevic 060366f6b3
gnu: rust@1.23.0: Inherit outputs. 
* gnu/packages/rust.scm (rust-1.23)[outputs]: Inherit.
 2018-09-13 17:19:04 +02:00
Danny Milosavljevic b78fe27b31
gnu: rust@1.25.0: Disable pedantic test. 
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>
[disable-nil-enum-test]: New phase.
 2018-09-13 17:17:15 +02:00
Danny Milosavljevic 6fe73b487b
gnu: rust: Accept more detailed gdb responses. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust-1.25): Use it.
(rust-1.26): Use it.
(rust): Use it.
 2018-09-13 17:17:15 +02:00
pimi 3cadd3ce93
gnu: Add r-abe. 
gnu/packages/cran.scm (r-abe): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 15:21:40 +02:00
pimi d1ca3d7297
gnu: Add r-svdialogs. 
gnu/packages/cran.scm (r-svdialogs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-13 15:07:45 +02:00
宋文武 26700caed9
gnu: racket: Fix incompatibility with libedit. 
The former patching made racket detecting libedit as the old 2.11 version,
which leads to failure:
<https://lists.gnu.org/archive/html/help-guix/2018-09/msg00027.html>.

* gnu/packages/scheme.scm (racket)[arguments]: Patch the 'ffi-lib' call of
libedit using 'PLT_READLINE_LIB'.
 2018-09-13 20:20:41 +08:00
Danny Milosavljevic 73dc7834de
gnu: rust@1.20.0: Replace "default-ar" by "ar". 
* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Replace
"default-ar" by "ar".
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 1ab3e1dd98
gnu: Add rust@1.22.1. 
* gnu/packages/rust.scm (rust-1.22): New variable.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 05ebff92bd
gnu: Add rust@1.21.0. 
* gnu/packages/rust.scm (rust-1.21): New variable.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic e69b1a7c6e
gnu: rust-bootstrap: Clean up comments. 
* gnu/packages/rust.scm (rust-bootstrap): Clean up comments.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic bfdc0e4d45
gnu: rust: Move "cc" from rust-bootstrap to rust proper. 
* gnu/packages/rust.scm (rust-bootstrap)[arguments]<#:phases>[install]:
Delete "cc".
(rust-1.23)[arguments]<#:phases>: Delete "provide-cc" deletion.
 2018-09-13 10:10:49 +02:00
Danny Milosavljevic 333c0ca966
gnu: rust@1.23.0: Use rust@1.20.0 as template. 
* gnu/packages/rust.scm (rust-1.23)[inherit]: Use rust-1.20.
[arguments]<#:phases>: Delete "patch-cargo-tomls" phase deletion.
Add "provide-cc" phase deletion.
Add "configure-archiver" phase deletion.
[configure]: Inherit phase.
[reset-timestamps-after-changes]: Inherit phase.
[build]: Inherit phase.
[check]: Inherit phase.
[install]: Inherit phase.
[wrap-rustc]: Inherit phase.
 2018-09-13 10:10:48 +02:00
Maxim Cournoyer f309671c28
gnu: Add emacs-org-reveal. 
* gnu/packages/emacs.scm (emacs-org-reveal): New variable.
 2018-09-12 22:48:04 -04:00
Maxim Cournoyer 82baeea297
gnu: Add emacs-elpy. 
* gnu/packages/emacs.scm (emacs-elpy): New variable.
 2018-09-12 22:16:25 -04:00
Maxim Cournoyer dcc31d7f41
gnu: Add emacs-highlight-indentation. 
* gnu/packages/emacs.scm (emacs-highlight-indentation): New variable.
 2018-09-12 22:16:25 -04:00
Maxim Cournoyer 87e9fb5753
gnu: Add emacs-pyvenv. 
* gnu/packages/emacs.scm (emacs-pyvenv): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer 2c6ff3a2bc
gnu: Add emacs-find-file-in-project. 
* gnu/packages/emacs.scm (emacs-find-file-in-project): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer 563f151bd4
gnu: Add emacs-mocker. 
* gnu/packages/emacs.scm (emacs-mocker): New variable.
 2018-09-12 22:16:24 -04:00
Maxim Cournoyer aaf10fa7d8
gnu: Add emacs-el-x. 
* gnu/packages/emacs.scm (emacs-el-x): New variable.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 8795ce8673
gnu: Add python-black. 
* gnu/packages/python.scm (python-black): New variable.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 7e846d07e8
gnu: Add python-toml. 
* gnu/packages/python.scm (python-toml): New variables.
 2018-09-12 22:16:23 -04:00
Maxim Cournoyer 4bd8f4f302
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[propagated-inputs]: Move python-parso here, as it is required at run time.
 2018-09-12 22:16:18 -04:00
Danny Milosavljevic 614cfd5c54
gnu: Add rust@1.20.0. 
* gnu/packages/rust.scm (rust-1.20): New variable.
 2018-09-13 00:25:01 +02:00
Danny Milosavljevic 3763e7716c
gnu: rust@1.19.0: Remove superfluous install-file call. 
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Remove
superfluous install-file call.
 2018-09-12 23:17:42 +02:00
Danny Milosavljevic 5a3fcf5b44
gnu: rust@1.19.0: Install rustdoc. 
* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[install]: Install
rustdoc.
 2018-09-12 23:17:42 +02:00
Danny Milosavljevic 0bcd1bc778
gnu: rust@1.19.0: Use match-lambda directly. 
Follow-up to 3159ef7c99.

* gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Use
match-lambda directly.
 2018-09-12 23:17:42 +02:00
Nils Gillmann f006237c54
gnu: gnurl: Update to 7.61.1. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.61.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-09-12 16:02:39 -04:00
Leo Famulari ff9008d8de
gnu: Zsh: Remove workaround required for Zsh 5.6. 
This is a followup to commit 5a5d3e3563.

* gnu/packages/shells.scm (zsh)[arguments]: Remove substitutions in 'patch-test'
phase.
 2018-09-12 15:21:42 -04:00
Pierre Neidhardt 4fa7f29f2a
gnu: emacs-hl-todo: Update to 1.9.0. 
* gnu/packages/emacs.scm (emacs-hl-todo): Update to 1.9.0.
 2018-09-12 19:51:26 +02:00
Ricardo Wurmus 4a89bdd196
gnu: python-scikit-learn: Update to 0.19.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.19.2.
[source]: Fetch from git.
[arguments]: Run tests before installation; replace "check" phase, add
"build-ext" phase; delete "reset-gzip-timestamps" phase.
[native-inputs]: Add python-pytest and python-pandas; remove python-nose.
 2018-09-12 19:35:02 +02:00
Pierre Neidhardt b002809f84
gnu: Add emacs-blimp. 
* gnu/packages/emacs.scm (emacs-blimp): New variable.
 2018-09-12 19:34:17 +02:00
Pierre Neidhardt 320105eadb
gnu: Add emacs-org-web-tools. 
* gnu/packages/emacs.scm (emacs-org-web-tools): New variable.
 2018-09-12 19:34:17 +02:00
Pierre Neidhardt 9c208f38f2
gnu: Add emacs-youtube-dl. 
* gnu/packages/emacs.scm (emacs-youtube-dl): New variable.
 2018-09-12 19:34:14 +02:00
Tobias Geerinckx-Rice acd4da3f29
gnu: libfilezilla: Update to 0.13.1. 
* gnu/packages/ftp.scm (libfilezilla): Update to 0.13.1.
 2018-09-12 16:44:08 +02:00
Tobias Geerinckx-Rice bec13d872d
gnu: sg3-utils: Update to 1.43. 
* gnu/packages/scsi.scm (sg3-utils): Update to 1.43.
[license]: Add bsd-2.
 2018-09-12 16:44:08 +02:00
Tobias Geerinckx-Rice 0f304ba73e
gnu: syslinux: Use HTTPS home page. 
* gnu/packages/bootloaders.scm (syslinux)[home-page]: Use HTTPS.
 2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 60d8db74c6
gnu: syslinux: Use INVOKE. 
* gnu/packages/bootloaders.scm (syslinux)[arguments]: Substitute INVOKE
for SYSTEM*.
 2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 5a5d3e3563
gnu: zsh: Update to 5.6.1. 
* gnu/packages/shells.scm (zsh): Update to 5.6.1.
 2018-09-12 16:09:38 +02:00
Tobias Geerinckx-Rice 4dbef67102
gnu: zsh: Use HTTPS. 
* gnu/packages/shells.scm (zsh)[source, home-page]: Use HTTPS.
 2018-09-12 16:09:37 +02:00
Tobias Geerinckx-Rice c8749b0250
gnu: Add perl-mock-config. 
* gnu/packages/perl-check.scm (perl-mock-config): New public variable.
 2018-09-12 16:09:37 +02:00
Efraim Flashner b2c8d31ff6
gnu: perl-moosex-getopt: Update to 0.73. 
* gnu/packages/perl.scm (perl-moosex-getopt): Update to 0.73.
[native-inputs]: Add perl-module-build-tiny, perl-path-tiny,
perl-test-needs.
 2018-09-12 10:28:47 +03:00
Eric Bavier 50b3b83143
netsurf: Register patch. 
Follow-up to f9e140a243.

* gnu/local.mk (dist_patch_DATA): Add netsurf-message-timestamp.patch.
 2018-09-11 20:29:04 -05:00
Eric Bavier bbe46a4af5
mpi: Factorize openmpi setup build phase. 
* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
 2018-09-11 20:29:04 -05:00
Eric Bavier 5882078e8c
font-fantasque-sans: Upgrade to 1.7.2. 
* gnu/packages/fonts.scm (font-fantasque-sans): Upgrade to 1.7.2.
[native-inputs]: Add zip.
[arguments]: Add 'xrange->range phase for python3 compatibility.  Adjust
install phase to work with newly generated font variants.
 2018-09-11 20:29:03 -05:00
Pierre Neidhardt 2b0820bf0d
gnu: emacs-helm: Update to 3.0. 
* gnu/packages/emacs.scm (emacs-helm): Update to 3.0.
 2018-09-11 23:53:35 +02:00
Pierre Neidhardt ee0d184502
gnu: Add emacs-hackernews. 
* gnu/packages/emacs.scm (emacs-hackernews): New variable.
 2018-09-11 23:53:35 +02:00
Pierre Neidhardt bd8f74dfbe
gnu: emacs-evil-collection: Update to 20180911. 
* gnu/packages/emacs.scm (emacs-evil-collection): Update to 20180911.
 2018-09-11 23:53:35 +02:00
Pierre Neidhardt ac9e307740
gnu: emacs-magit-todos: Update to 1.1. 
* gnu/packages/emacs.scm (emacs-magit-todos): Update to 1.1.
 2018-09-11 23:53:35 +02:00
Pierre Neidhardt 475e16578f
gnu: emacs-helm-system-packages: Update to 1.10.1. 
* gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.1.
 2018-09-11 23:53:35 +02:00
Jan Nieuwenhuizen 4a67079f71
gnu: mes: Oops, use mirror://gnu download url. 
* gnu/packages/mes.scm (mes): Oops, use mirror://gnu download url.
 2018-09-11 22:34:02 +02:00
Tobias Geerinckx-Rice a855117c59
gnu: snakemake: Update home page. 
* gnu/packages/python.scm (snakemake)[home-page]: Update.
 2018-09-11 21:12:43 +02:00
Tobias Geerinckx-Rice 9b83c15afe
gnu: snakemake: Update to 5.2.2. 
* gnu/packages/python.scm (snakemake): Update to 5.2.2.
 2018-09-11 21:03:08 +02:00
Tobias Geerinckx-Rice a93de1ae9e
gnu: obnam: Add deprecation warning. 
* gnu/packages/backup.scm (obnam)[synopsis, description]: Note its
retirement.
 2018-09-11 21:03:07 +02:00
Tobias Geerinckx-Rice cd1e138cc6
gnu: unbound: Update to 1.8.0. 
* gnu/packages/dns.scm (unbound): Update to 1.8.0.
 2018-09-11 21:03:07 +02:00
Tobias Geerinckx-Rice 702a87f2d1
gnu: perl-dbd-mysql: Update to 4.047. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047.
[arguments]: Add 'skip-library-detection' phase.
 2018-09-11 21:03:07 +02:00
Jonathan Brielmaier 52b0a352c3
gnu: libreoffice: Update to 6.1.0.3. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.0.3.
[source]: Correct indenting.
[inputs]: Add libnumbertext and python-lxml.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 17:46:30 +02:00
Jonathan Brielmaier aeba7d4650
gnu: Add libnumbertext. 
* gnu/packages/libreoffice.scm (libnumbertext): New public variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 17:46:30 +02:00
Paul Garlick aa82260bc0
gnu: arpack-ng-openmpi: Fix build. 
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add
'set-test-environment phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 17:46:29 +02:00
Tim Gesthuizen d2fe71b04d
gnu: Add emacs-irony-mode. 
* gnu/packages/emacs.scm (emacs-irony-mode): New variable.
(emacs-irony-mode-server): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 17:46:28 +02:00
Ludovic Courtès 8539eb5c46
gnu: jupyter-guile-kernel: Add dependencies to the search path. 
This allows:

  guix environment --ad-hoc jupyter jupyter-guile-kernel \
    -- jupyter notebook

to work out-of-the-box.

* gnu/packages/guile.scm (jupyter-guile-kernel)[arguments]: In
'install-kernel' phase, add '-L' and '-C' flags to 'kernel.json'.
[propagated-inputs]: Remove.
[inputs]: Add GUILE-JSON and GUILE-SIMPLE-ZMQ.
 2018-09-11 17:46:28 +02:00
Ludovic Courtès 828fa94d7a
gnu: guile-simple-zmq, jupyter-guile-kernel: Update to 5bb66a0 and a7db924. 
* gnu/packages/guile.scm (guile-simple-zmq): Update to 5bb66a0.
(jupyter-guile-kernel): Update to a7db924.
 2018-09-11 17:46:28 +02:00
Mădălin Ionel Patrașcu 01af264dcb
gnu: Add r-svgui. 
* gnu/packages/cran.scm (r-svgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-11 17:27:10 +02:00
Marius Bakke f6b7ccc9f9
gnu: spice: Update to 0.14.1 [fixes CVE-2018-10873]. 
* gnu/packages/spice.scm (spice): Update to 0.14.1.
[source](uri): Update to new "spice-server" subdirectory.
[native-inputs]: Add GLIB-NETWORKING and GSETTINGS-DESKTOP-SCHEMAS.
[arguments]: Remove configure-flag which is now off even when celt is
available.  Add phase to set $SSL_CERT_FILE.
 2018-09-11 14:12:53 +02:00
Marius Bakke 41a659d2ec
gnu: usbredir: Update to 0.8.0. 
* gnu/packages/spice.scm (usbredir): Update to 0.8.0.
[source]: Use URL-FETCH.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
[arguments]: Remove.
 2018-09-11 14:12:53 +02:00
Leo Famulari b4ff75b507
gnu: syncthing: Update to 0.14.50. 
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.50.
 2018-09-11 03:24:46 -04:00
Leo Famulari e76709f71f
gnu: go-github-com-syncthing-notify: Update to 0.0.0-2.b76b458. 
* gnu/packages/syncthing.scm (go-github-com-syncthing-notify): Update to
0.0.0-2.b76b458.
 2018-09-11 03:24:42 -04:00
Leo Famulari 091ef8c97e
gnu: VLC: Update to 3.0.4. 
* gnu/packages/video.scm (vlc): Update to 3.0.4.
 2018-09-10 19:24:51 -04:00
Leo Famulari 5d9c28f117
gnu: git: Update to 2.19.0. 
* gnu/packages/version-control.scm (git): Update to 2.19.0.
(cgit)[inputs]: Use the source of Git 2.18.0.
 2018-09-10 19:02:45 -04:00
pimi cbb0edd1be
gnu: Add r-abd. 
* gnu/packages/cran.scm (r-abd): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 00:14:58 +02:00
pimi 6c6ce2d088
gnu: Add r-mosaic. 
* gnu/packages/cran.scm (r-mosaic): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 00:14:58 +02:00
pimi 2f195b6f23
gnu: Add r-mosaicdata. 
* gnu/packages/cran.scm (r-mosaicdata): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-11 00:14:58 +02:00
Ricardo Wurmus d54145c38a
gnu: guitarix: Update to 0.37.3. 
* gnu/packages/audio.scm (guitarix): Update to 0.37.3.
[inputs]: Add curl.
 2018-09-10 23:58:14 +02:00
Thorsten Wilms 029de52fe9
gnu: guitarix-lv2: Use correct configure flag. 
* gnu/packages/audio.scm (guitarix-lv2)[arguments]: Change configure flag.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-10 23:58:14 +02:00
Tobias Geerinckx-Rice 2740549754
gnu: kakoune: Use HTTPS home page. 
* gnu/packages/text-editors.scm (kakoune)[home-page]: Use HTTPS.
 2018-09-10 22:54:36 +02:00
Tobias Geerinckx-Rice b38827096f
gnu: mcrl2: Use HTTPS home page. 
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
 2018-09-10 22:54:36 +02:00
Tobias Geerinckx-Rice 4105f13bb5
gnu: tor: Update to 0.3.4.8. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.8.
 2018-09-10 22:54:35 +02:00
Tobias Geerinckx-Rice 695775b138
gnu: kakoune: Update to 2018.09.04. 
* gnu/packages/text-editors.scm (kakoune): Update to 2018.09.04.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice 4b41568fa5
gnu: python-binaryornot: Update to 0.4.4. 
* gnu/packages/python.scm (python-binaryornot): Update to 0.4.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice 86788cb0c9
gnu: python-parse: Update to 1.8.4. 
* gnu/packages/python.scm (python-parse): Update to 1.8.4.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice c0ea7f5ff4
gnu: python-parse: Mark up description. 
* gnu/packages/python.scm (python-parse)[description]: Use @code{}.
 2018-09-10 22:15:20 +02:00
Tobias Geerinckx-Rice cc12ac58a2
gnu: python-jedi: Update to 0.12.1. 
* gnu/packages/python.scm (python-jedi): Update to 0.12.1.
[synopsis, description]: Adjust to expanded functionality.
 2018-09-10 22:15:19 +02:00
Tobias Geerinckx-Rice 7a6eaf5ca9
gnu: python-parso: Update to 0.3.1. 
* gnu/packages/python.scm (python-parso): Update to 0.3.1.
 2018-09-10 22:15:19 +02:00
Tobias Geerinckx-Rice d56eee862b
gnu: qtractor: Update to 0.9.2. 
* gnu/packages/music.scm (qtractor): Update to 0.9.2.
[arguments]: Remove obsolete Qt 5.11 workaround.
 2018-09-10 22:15:19 +02:00
Leo Famulari 875d068176
Adjust all users of (gnu packages ldc) to use (gnu packages dlang). 
This is a followup to commit 98d6543f86.

* gnu/packages/bioinformatics.scm, guix/build-system/dub.scm: Adjust
accordingly.
 2018-09-10 15:44:32 -04:00
Marius Bakke c5e4b4cc8f
gnu: Add libabigail. 
* gnu/packages/elf.scm (libabigail): New public variable.
 2018-09-10 20:27:42 +02:00
Marius Bakke fc449407fe
gnu: python-debian: Update home page. 
* gnu/packages/python.scm (python-debian)[home-page]: Set to source
repository.
 2018-09-10 20:27:42 +02:00
Marius Bakke 418ec0adc9
gnu: python-libarchive-c: Update to 2.8. 
* gnu/packages/python.scm (python-libarchive-c): Update to 2.8.
[arguments]: Replace 'check' phase.
[native-inputs]: Add PYTHON-MOCK and PYTHON-PYTEST.
 2018-09-10 20:27:42 +02:00
Marius Bakke ba0052e8ae
gnu: python-tlsh: Update to 3.4.5. 
* gnu/packages/python.scm (python-tlsh): Update to 3.4.5.
 2018-09-10 20:27:42 +02:00
Marius Bakke 8fe059bf6c
gnu: python-cryptography: Update to 2.3.1. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.3.1.
 2018-09-10 20:27:42 +02:00
Tobias Geerinckx-Rice 2424d5e56c
gnu: cloc: Update source hash. 
The upstream tarball was modified in place. The only changes are:

  --- /gnu/store/5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar.gz
  +++ /gnu/store/pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar.gz
  ├── filetype from file(1)
  │ @@ -1 +1 @@
  │ -gzip compressed data, last modified: Fri Sep  7 18:22:49 2018, from Unix
  │ +gzip compressed data, last modified: Sat Sep  8 14:09:43 2018, from Unix
  │   --- 5v39h6zjs33hj5dm2yggz5qk0mva00bs-cloc-1.78.tar
  ├── +++ pm5ghks76vv6awv3969yvi7qxqfnfs1l-cloc-1.78.tar
  │ ├── file list
  │ │ @@ -1,13 +1,13 @@
  │ │  -rwxrwxr-x 0 al (1000) al (1000) 545021 2018-09-07 18:21:22 cloc-1.78/cloc
  │ │  -rwxrwxr-x 0 al (1000) al (1000)   1818 2018-09-07 18:21:22 cloc-1.78/sqlite_formatter
  │ │ -drwxrwxr-x 0 al (1000) al (1000)      0 2018-09-07 18:21:22 cloc-1.78/Unix/
  │ │ --rwxrwxr-x 0 al (1000) al (1000) 498571 2018-09-07 18:21:22 cloc-1.78/Unix/cloc
  │ │ +drwxrwxr-x 0 al (1000) al (1000)      0 2018-09-08 14:09:23 cloc-1.78/Unix/
  │ │ +-rwxrwxr-x 0 al (1000) al (1000) 498537 2018-09-08 14:09:22 cloc-1.78/Unix/cloc
  │ │  -rwxrwxr-x 0 al (1000) al (1000)  32382 2018-09-07 18:21:22 cloc-1.78/Unix/t/00_C.t
  │ │  -rwxrwxr-x 0 al (1000) al (1000)  12614 2018-09-07 18:21:22 cloc-1.78/Unix/t/01_opts.t
  │ │  -rw-rw-r-- 0 al (1000) al (1000)    862 2018-09-07 18:21:22 cloc-1.78/Unix/README
  │ ├── cloc-1.78/Unix/cloc
  │ │ @@ -1,8 +1,7 @@
  │ │ -#!/usr/local/perl/5.28.0/bin/perl
  │ │  #!/usr/bin/env perl

* gnu/packages/code.scm (cloc)[source]: Update sha256 hash.
 2018-09-10 20:20:00 +02:00
Leo Famulari 254844f22d
gnu: nano: Update to 3.0. 
* gnu/packages/nano.scm (nano): Update to 3.0.
 2018-09-10 13:54:29 -04:00
Mark H Weaver eb07a6f898
gnu: linux-libre: Update to 4.18.7. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.7.
(%linux-libre-hash): Update hash.
 2018-09-10 13:25:54 -04:00
Mark H Weaver c727ed05ac
gnu: linux-libre@4.14: Update to 4.14.69. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.69.
(%linux-libre-4.14-hash): Update hash.
 2018-09-10 13:24:01 -04:00
Mark H Weaver 176999f18e
gnu: linux-libre@4.9: Update to 4.9.126. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.126.
 2018-09-10 13:23:20 -04:00
Mark H Weaver d7e9bd15fa
gnu: linux-libre@4.4: Update to 4.4.155. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.155.
 2018-09-10 13:22:35 -04:00
Tobias Geerinckx-Rice 98184e566c
gnu: gnome-mpv: Update to 0.15. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.15.
 2018-09-10 18:22:00 +02:00
Tobias Geerinckx-Rice 37a2ea118d
gnu: fortify-headers: Update to 1.0. 
* gnu/packages/suckless.scm (fortify-headers): Update to 1.0.
 2018-09-10 18:22:00 +02:00
Tobias Geerinckx-Rice 7c8b1bf664
gnu: python-genshi: Update to 0.7.1. 
* gnu/packages/python-web.scm (python-genshi): Update to 0.7.1.
[source]: Use GIT-FETCH and GIT-FILE-NAME. Remove patches.
* gnu/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch,
gnu/packages/patches/python-genshi-buildable-on-python-2.7.patch,
gnu/packages/patches/python-genshi-disable-speedups-on-python-3.3.patch,
gnu/packages/patches/python-genshi-fix-tests-on-python-3.5.patch,
gnu/packages/patches/python-genshi-isstring-helper.patch,
gnu/packages/patches/python-genshi-stripping-of-unsafe-script-tags.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2018-09-10 18:21:59 +02:00
Tobias Geerinckx-Rice 83397e0786
gnu: python-sockjs-tornado: Update to 1.0.5. 
* gnu/packages/python-web.scm (python-sockjs-tornado): Update to 1.0.5.
 2018-09-10 18:21:59 +02:00
Tobias Geerinckx-Rice 1f7fe26f83
gnu: python-sockjs-tornado: Edit synopsis & description. 
* gnu/packages/python-web.scm (python-sockjs-tornado)[synopsis]
[description]: Pick nits.
 2018-09-10 18:21:59 +02:00
Pjotr Prins 98d6543f86
gnu: Rename ldc.scm to dlang.scm. 
* gnu/packages/ldc.scm: Rename to...
* gnu/packages/dlang.scm: ... this.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2018-09-10 17:47:52 +02:00
Pjotr Prins 633e8aab69
gnu: ldc: Update to 1.10.0. 
* gnu/packages/ldc.scm (ldc): Update to 1.10.0.
[native-inputs]: Switch to LLVM and CLANG.
(ldc-bootstrap)[synopsis, description]: Tweak.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: New file.
* gnu/packages/patches/ldc-1.7.0-disable-phobos-tests.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-09-10 17:47:52 +02:00
Benjamin Slade f80d6ea251
gnu: Add hstr. 
* gnu/packages/shellutils.scm (hstr): New variable.
 2018-09-10 17:47:52 +02:00
Alex Kost 8a8662d286
gnu: emacs-guix: Update to 0.5. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.
[propagated-inputs]: Add 'guile-gcrypt'.
[arguments]: Adjust #:configure-flags accordingly.
 2018-09-10 18:38:32 +03:00
Alex Kost fdf68c232d
gnu: emacs-build-farm: Update to 0.2.1. 
* gnu/packages/emacs.scm (emacs-build-farm): Update to 0.2.1.
Change source from gitlab to notabug.
 2018-09-10 18:38:32 +03:00
Alex Kost 5d78cf0b6c
gnu: emacs-bui: Update to 1.2.0. 
* gnu/packages/emacs.scm (emacs-bui): Update to 1.2.0.
Change source from github to notabug.
 2018-09-10 18:38:32 +03:00
Ricardo Wurmus 5bfa7510d1
gnu: Add python-pygenometracks. 
* gnu/packages/bioinformatics.scm (python-pygenometracks): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 1189c7f1b0
gnu: Add python-hicexplorer. 
* gnu/packages/bioinformatics.scm (python-hicexplorer): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 5bb9e0af8d
gnu: Add python-cooler. 
* gnu/packages/bioinformatics.scm (python-cooler): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 80f4db91b1
gnu: Add python-pyfaidx. 
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 1f41f01c14
gnu: Add python-pypairix. 
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus a9d496b353
gnu: Add python-intervaltree. 
* gnu/packages/bioinformatics.scm (python-intervaltree): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus a6a7156aa9
gnu: Add python-dask. 
* gnu/packages/python.scm (python-dask): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 035989c403
gnu: Add python-partd. 
* gnu/packages/python.scm (python-partd): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus c27a9d8a88
gnu: Add python-blosc. 
* gnu/packages/python.scm (python-blosc): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus b2b8226244
gnu: Add python-locket. 
* gnu/packages/python.scm (python-locket): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 930ba31d20
gnu: Add python-cloudpickle. 
* gnu/packages/python.scm (python-cloudpickle): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 3d352cb9cf
gnu: Add python-sortedcontainers. 
* gnu/packages/python.scm (python-sortedcontainers): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 098cb1e9c4
gnu: Add python-cytoolz. 
* gnu/packages/python.scm (python-cytoolz): New variable.
 2018-09-10 16:50:26 +02:00
Ricardo Wurmus 7cd51cd28e
gnu: Add python-toolz. 
* gnu/packages/python.scm (python-toolz): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus 943a4cb601
gnu: Add python-multiprocess. 
* gnu/packages/python.scm (python-multiprocess): New variable.
 2018-09-10 16:50:25 +02:00
Ricardo Wurmus fc62567251
gnu: Add python-dill. 
* gnu/packages/python.scm (python-dill): New variable.
 2018-09-10 16:50:25 +02:00
Tobias Geerinckx-Rice 82d5c7c6de
gnu: python-typing: Update to 3.6.6. 
* gnu/packages/python.scm (python-typing): Update to 3.6.6.
 2018-09-10 15:29:13 +02:00
Tobias Geerinckx-Rice 419aa05e1b
gnu: tinyproxy: Update to 1.10.0. 
* gnu/packages/web.scm (tinyproxy): Update to 1.10.0.
[native-inputs]: Remove asciidoc.
 2018-09-10 15:29:12 +02:00
Tobias Geerinckx-Rice f6c8a97a04
gnu: spectrwm: Update to 3.2.0. 
* gnu/packages/wm.scm (spectrwm): Update to 3.2.0.
[arguments]: Remove 'fix-freetype-include' phase.
 2018-09-10 15:29:12 +02:00
Mădălin Ionel Patrașcu 57d70dbabc
gnu: Add yad. 
* gnu/packages/gtk.scm (yad): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-09-10 14:45:15 +02:00
Ludovic Courtès 94b3b6041d
gnu: hpcguix-web: Update to 53e09ea. 
* gnu/packages/web.scm (hpcguix-web): Update to 53e09ea.
 2018-09-10 12:18:14 +02:00
Ludovic Courtès 81317071fb
services: hpcguix-web: Produce a log file and rotate it. 
* gnu/services/web.scm (%hpcguix-web-log-file)
(%hpcguix-web-log-rotations): New variables.
(hpcguix-web-shepherd-service): Pass #:log-file.
(hpcguix-web-service-type): Extend ROTTLOG-SERVICE-TYPE.
 2018-09-10 12:12:52 +02:00
Ludovic Courtès 19de8273ee
services: tailon: Move to (gnu services web). 
This allows (gnu services admin) to remain deeper in the module graph
and to be used by (gnu services web).

* gnu/services/admin.scm (<tailon-configuration-file>)
(tailon-configuration-files-string)
(tailon-configuration-file-compiler, <tailon-configuration>)
(tailon-shepherd-service, %tailon-accounts)
(tailon-service-type): Move to...
* gnu/services/web.scm: ... here.
* gnu/tests/admin.scm: Remove.  Move test to...
* gnu/tests/web.scm (%tailon-os)
(run-tailon-test, %test-tailon): ... here.
 2018-09-10 12:12:50 +02:00
Alex Vong d930374014
gnu: youtube-dl: Update to 2018.08.04. 
* gnu/packages/video.scm (youtube-dl): Update to 2018.08.04.
 2018-09-10 11:31:34 +02:00
Leo Famulari de15ff1a6c
gnu: Add asignify. 
* gnu/packages/crypto.scm (asignify): New variable.
 2018-09-09 20:05:47 -04:00
Leo Famulari d4bd2453ec
gnu: certbot: Update to 0.27.1. 
* gnu/packages/tls.scm (python-acme): Update to 0.27.1.
[arguments]: Use invoke.
(certbot): Update to 0.27.1.
[native-inputs]: Use python-sphinx-1.6.
 2018-09-09 18:52:04 -04:00
Leo Famulari ced98c7e89
gnu: libgd: Fix CVE-2018-{5711,1000222}. 
* gnu/packages/patches/gd-CVE-2018-1000222.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd/fixed): New variable.
* gnu/packages/php.scm (gd-for-php)[source]: Use 'gd-CVE-2018-1000222.patch'.
 2018-09-09 18:13:19 -04:00
Ricardo Wurmus 45350539aa
gnu: r-chron: Update to 2.3-53. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-53.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus ab50580a9d
gnu: r-annotationhub: Update to 2.12.1. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.1.
 2018-09-09 22:26:02 +02:00
Ricardo Wurmus 35c076e619
gnu: r-chippeakanno: Update to 3.14.2. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.2.
 2018-09-09 22:26:02 +02:00
Roel Janssen c36d972531
gnu: Update texmaker to 5.0.2. 
* gnu/packages/tex.scm (texmaker): Update to 5.0.2.
 2018-09-09 21:59:08 +02:00
Marius Bakke 0084744b3a
gnu: ghostscript: Update replacement to 9.24 [security fixes]. 
The following CVEs are fixed with this release: CVE-2018-15908,
CVE-2018-15909, CVE-2018-15910, CVE-2018-15911, CVE-2018-16509,
CVE-2018-16510, CVE-2018-16511, CVE-2018-16513, CVE-2018-16539,
CVE-2018-16540, CVE-2018-16541, CVE-2018-16542, CVE-2018-16543.

* gnu/packages/patches/ghostscript-CVE-2018-10194.patch: Delete file.
* gnu/packages/patches/ghostscript-CVE-2018-16509.patch,
gnu/packages/patches/ghostscript-bug-699708.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ghostscript.scm (ghostscript/fixed): Update to 9.24.
[source](patches): Remove 'ghostscript-CVE-2018-10194.patch' and
'ghostscript-runpath.patch'.  Add 'ghostscript-CVE-2018-16509.patch' and
'ghostscript-bug-699708.patch'.
[arguments]: Add LDFLAGS to #:configure-flags, and a phase to create output
directory.
 2018-09-09 16:43:11 +02:00
Marius Bakke 910a20e2b8
gnu: jbig2dec: Replace with 0.15 [security fixes]. 
* gnu/packages/image.scm (jbig2dec-0.15): New public variable.
(jbig2dec)[replacement]: New field.
 2018-09-09 16:43:11 +02:00
Marius Bakke a617fd55df
gnu: OpenBLAS: Update source URI. 
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable
SourceForge mirror.
 2018-09-09 16:43:11 +02:00
Marius Bakke 1448fa2547
gnu: openal: Update to 1.19.0. 
* gnu/packages/audio.scm (openal): Update to 1.19.0.
 2018-09-09 16:43:11 +02:00
Marius Bakke e9c1492f66
gnu: glm: Update to 0.9.9.1. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
 2018-09-09 16:43:10 +02:00
Marius Bakke 91b3a6d4db
gnu: msmtp: Remove unneeded input. 
* gnu/packages/mail.scm (msmtp)[inputs]: Remove LIBIDN, which is only required
when using OpenSSL (or GnuTLS sans IDN support).
 2018-09-09 16:43:10 +02:00
Marius Bakke 37f9cfae43
gnu: msmtp: Update to 1.8.0. 
* gnu/packages/mail.scm (msmtp): Update to 1.8.0.
 2018-09-09 16:43:10 +02:00
Marius Bakke 249846bfde
gnu: libsoup: Update to 2.64.0. 
* gnu/packages/gnome.scm (libsoup): Update to 2.64.0.
[inputs]: Add LIBPSL.
 2018-09-09 16:43:10 +02:00
Marius Bakke 617cf5de92
gnu: mpfr: Update home page. 
* gnu/packages/multiprecision.scm (mpfr)[home-page]: Use HTTPS.
 2018-09-09 16:43:10 +02:00
Marius Bakke 81bf0fd0d4
gnu: julia: Update objconv input. 
* gnu/packages/julia.scm (julia)[inputs]: Update the hash of "objconv", which
does not have a stable URL.  Add a file name and use HTTPS while at it.
 2018-09-09 16:43:10 +02:00