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Author SHA1 Message Date
Kei Kebreau 1a82ba660e
gnu: ntfs-3g: Fix CVE-2017-0358. 
* gnu/packages/linux.scm (ntfs-3g)[source]: Add patch.
* gnu/packages/patches/ntfs-3g-CVE-2017-0358.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-02-09 22:27:51 -05:00
Mark H Weaver b2b02ba3ef
gnu: linux-libre: Update to 4.9.9. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.9.9.
(%linux-libre-hash): Update hash.
 2017-02-09 18:36:07 -05:00
Mark H Weaver 76e62ef723
gnu: linux-libre: Use %linux-libre-{version,hash} in package definition. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash): Move
above definition of 'linux-libre'.  Remove comment about avoiding minor
version bumps.
(linux-libre): Use %linux-libre-version and %linux-libre-hash to avoid
duplicate copies of that information.
 2017-02-09 18:33:36 -05:00
Mark H Weaver 69ff1794b3
gnu: linux-libre@4.4: Update to 4.4.48. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.48.
 2017-02-09 18:28:06 -05:00
Mathieu Othacehe c7adafa7c1
gnu: Add tlp. 
* gnu/packages/linux (tlp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-10 00:13:55 +01:00
Ludovic Courtès dc7010911d
gnu: emacs: Adjust 'tramp-remote-path' for remote GuixSD machines. 
* gnu/packages/emacs.scm (emacs)[source](snippet): Patch
'net/tramp-sh.el'.
 2017-02-10 00:13:55 +01:00
Muriithi Frederick Muriuki 8fd6850436
gnu: Add python2-ruamel.ordereddict. 
* gnu/packages/python.scm (python2-ruamel.ordereddict): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:24 +01:00
Muriithi Frederick Muriuki 2299b13738
gnu: Add python-pycosat. 
* gnu/packages/python.scm (python-pycosat, python2-pycosat): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:24 +01:00
Muriithi Frederick Muriuki 2f4623dbd8
gnu: Add python-ddt. 
* gnu/packages/python.scm (python-ddt, python2-ddt): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 23:41:23 +01:00
Muriithi Frederick Muriuki 1f42d824c1
gnu: Add python-flake8-polyfill. 
* gnu/packages/python.scm (python-flake8-polyfill, python2-flake8-polyfill):
New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 22:54:58 +01:00
Muriithi Frederick Muriuki 1a917fc9de
gnu: Add python-rst2ansi. 
* gnu/packages/python.scm (python-rst2ansi): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-09 22:54:58 +01:00
Marius Bakke c09fbf2058
gnu: xf86-video-intel: Update to 2.99.917-3-e4fe79c. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-3-e4fe79c.
 2017-02-09 22:02:35 +01:00
Marius Bakke 890795c709
gnu: vte-ng: Update to 0.46.1.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.46.1.a.
 2017-02-09 21:53:27 +01:00
Mathieu Lirzin 6554be68b4
git-download: Add 'git-predicate'. 
* guix/git-download.scm (git-predicate): New procedure.
* gnu/packages/package-management.scm (current-guix): Use it.
(make-git-predicate): Remove.
 2017-02-09 13:56:54 -06:00
Paul Garlick 4554813936
gnu: gmsh: Propagate opencascade-oce. 
* gnu/packages/maths.scm (gmsh)[propagated-inputs]: Add opencascade-oce.
[arguments]: Remove #:phases parameter for component8_in_a_box test

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-09 19:19:06 +01:00
ng0 ff71196067
gnu: libextractor: Move .a files to output "static". 
* gnu/packages/gnunet.scm (libextractor): Move .a files to "static" output.
[arguments](phases): New phase for moving .a files to output "static".

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-09 12:15:28 -05:00
ng0 b0a2adddc8
gnu: libextractor: Add dependencies. 
* gnu/packages/gnunet.scm (libextractor): Add dependencies:
tidy-html, libmp4v2, libsmf, bzip2.
[arguments](configure-flags): Add "--with-libtidy".
* Adjust the FIXME comment section accordingly.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-09 12:15:28 -05:00
ng0 a4f05b4620
gnu: Add libsmf. 
* gnu/packages/music.scm (libsmf): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-09 12:15:28 -05:00
ng0 1ad3c7f2e6
gnu: Add tidy-html. 
* gnu/packages/web.scm (tidy-html): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-09 12:15:28 -05:00
ng0 3a44c7bbdc
gnu: Add libmp4v2. 
* gnu/packages/video.scm (libmp4v2): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-09 12:15:28 -05:00
Marius Bakke e0c752f969
gnu: xf86-input-libinput: Update to 0.24.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.24.0.
 2017-02-09 15:16:28 +01:00
Marius Bakke 233a0c9437
gnu: lua: Update to 5.3.4. 
* gnu/packages/lua.scm (lua): Update to 5.3.4.
 2017-02-09 14:59:11 +01:00
Marius Bakke 65064909ed
gnu: libvpx: Update to 1.6.1. 
* gnu/packages/video.scm (libvpx): Update to 1.6.1.
* gnu/packages/patches/libvpx-CVE-2016-2818.patch: Adjust to indentation changes.
 2017-02-09 14:58:54 +01:00
Ben Woodcroft 206af46fe1
gnu: vsearch: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.0.
[source]: Convert most operations in the snippet to patch form and adjust
for 2.4.0.
* gnu/packages/patches/vsearch-unbundle-cityhash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-02-09 21:21:29 +10:00
Carlos Sánchez de La Lama c8916c3336
gnu: bash-minimal: Assume getcwd works correctly when cross-compiling 
* gnu/packages/bash.scm (bash-minimal): Assume getcwd works correctly
when cross compiling.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-02-09 13:05:17 +02:00
Efraim Flashner 98c8b963f4
gnu: mpv: Disable build date. 
* gnu/packages/video.scm (mpv)[arguments]: Add '--disable-build-date' to
the configure-flags.
 2017-02-09 12:15:05 +02:00
Efraim Flashner f4b7cb88a4
gnu: ffmpeg: Update to 3.2.3. 
* gnu/packages/video.scm (ffmpeg): Update to 3.2.3.
 2017-02-09 11:22:14 +02:00
Efraim Flashner 3548b83de1
gnu: isc-dhcp: Update bundled bind to 9.9.9-P6. 
* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.9-P6.
 2017-02-09 10:53:52 +02:00
Marius Bakke ba8b9f8de0
gnu: databases.scm: Use license: prefix. 
* gnu/packages/databases.scm (4store, gdbm, bdb, bdb-5.3, mysql, mariadb,
  postgresql, qdbm, rocksdb, sparql-query, sqlite, perl-dbi, redis,
  unixodbc, kyotocabinet, wiredtiger): Use license: prefix.
 2017-02-09 00:43:44 +01:00
Marius Bakke 06a035db42
gnu: databases.scm: Sort package imports. 
* gnu/packages/databases.scm (gnu): Sort module imports.
 2017-02-09 00:43:05 +01:00
Marius Bakke 77e52190fa
gnu: rocksdb: Update to 5.1.2. 
* gnu/packages/databases.scm (rocksdb): Update to 5.1.2.
[native-inputs]: Add WHICH.
 2017-02-09 00:40:35 +01:00
Marius Bakke 507809be15
gnu: weechat: Make sure it finds the correct python. 
Fixes <https://bugs.gnu.org/21879>.

* gnu/packages/irc.scm (weechat)[arguments]: Drop 'set-python-file-name' phase
in favor of a 'wrap' phase.
 2017-02-09 00:40:14 +01:00
Marius Bakke bafd5bea97
gnu: bind: Update to 9.10.4-P6. 
* gnu/packages/dns.scm (bind): Update to 9.10.4-P6.
 2017-02-09 00:32:23 +01:00
Thomas Danckaert cce0da5e8d
gnu: Add vinagre. 
* gnu/packages/gnome.scm (vinagre): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-08 16:17:05 +01:00
Thomas Danckaert 2149d3e3e5
gnu: Add freerdp. 
* gnu/packages/rdesktop.scm (freerdp): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-08 16:17:05 +01:00
Clément Lassieur 750a423996
services: shepherd: Replace spaces with hyphens in file names. 
This fixes a bug whereby names of files defining services would be
invalid if 'provisions' contained more than one element.

* gnu/services/shepherd.scm (shepherd-service-file-name): Update
'match-lambda' accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-08 16:17:05 +01:00
Ludovic Courtès 387e175492
services: Add 'special-files-service-type'. 
* gnu/build/activation.scm (activate-/bin/sh): Remove.
(activate-special-files): New procedure.
* gnu/services.scm (activation-script): Remove call to
'activate-/bin/sh'.
(special-files-service-type): New variable.
(extra-special-file): New procedure.
* gnu/services/base.scm (%base-services): Add SPECIAL-FILES-SERVICE-TYPE
instance.
* gnu/tests/base.scm (run-basic-test)[special-files]: New variables.
["special files"]: New test.
 2017-02-08 16:17:05 +01:00
宋文武 618739b063
gnu: nix: Update to 1.11.6. 
* gnu/packages/package-management.scm (nix): Update to 1.11.6.
 2017-02-08 20:54:42 +08:00
ng0 6bd9ad6942
gnu: python-dateutil-2: Update to 2.5.3. 
* gnu/packages/python.scm (python-dateutil-2): Update to 2.5.3.
 2017-02-08 08:33:16 +01:00
Ricardo Wurmus 4621acfd82
gnu: r: Build default packages reproducibly. 
This is a follow-up to commit de643f0c15.

* gnu/packages/statistics.scm (r)[arguments]: Set the built timestamp for core
packages to the epoch; add phase "build-recommended-packages-reproducibly".
 2017-02-07 20:04:49 +01:00
Danny Milosavljevic 98d403bb45
gnu: Add python-pyodbc-c. 
* gnu/packages/databases.scm (python-pyodbc-c, python2-pyodbc-c):
  New variables.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-07 13:34:38 -05:00
Tobias Geerinckx-Rice 22a7abf7e5
gnu: youtube-dl: Update to 2017.02.07. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.02.07.
 2017-02-07 18:55:46 +01:00
Tobias Geerinckx-Rice 4dcb3db0ee
gnu: fonts: Use install-file where appropriate. 
* gnu/packages/fonts.scm (font-wqy-microhei, font-google-roboto)[arguments]:
Substitute the simpler INSTALL-FILE for every COPY-FILE invoked with redundant
arguments.
 2017-02-07 18:51:14 +01:00
Tobias Geerinckx-Rice 33a8687a2a
gnu: mcelog: Update to 148. 
* gnu/packages/linux.scm (mcelog): Update to 148.
 2017-02-07 18:51:13 +01:00
Boskovits, Gábor 189d842257
gnu: Add lshw. 
* gnu/packages/linux.scm (lshw): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-02-07 17:56:06 +01:00
Ludovic Courtès ef753a1a8f
gnu: grub-efi: Really build the EFI variant. 
Fixes a regression introduced in
d846834fc2 where '--with-platform=efi'
would no longer be passed.

* gnu/packages/grub.scm (grub-efi)[arguments]: Provide a default value
for #:configure-flags.
 2017-02-07 11:15:33 +01:00
Mark H Weaver 6f48d9db10
gnu: epiphany: Update to 3.22.6 [security update]. 
See <https://bugzilla.gnome.org/show_bug.cgi?id=752738>.

* gnu/packages/gnome.scm (epiphany): Update to 3.22.6.
[arguments]: Add #:configure-flags '("CFLAGS=-std=gnu99").
 2017-02-06 22:25:18 -05:00
Ludovic Courtès a062b6ca99
services: bitlbee: Run in a container. 
* gnu/services/networking.scm (bitlbee-shepherd-service): Wrap in
'with-imported-modules' and add 'modules' field.  Use
'make-forkexec-constructor/container' and pass #:mappings.
 2017-02-07 00:08:11 +01:00
Ludovic Courtès 63302a4e55
Add (gnu build shepherd). 
* gnu/build/shepherd.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2017-02-07 00:08:11 +01:00
Ludovic Courtès c90db25f4c
linux-container: Add 'container-excursion*'. 
* gnu/build/linux-container.scm (container-excursion*): New procedure.
* tests/containers.scm ("container-excursion*")
("container-excursion*, same namespaces"): New tests.
 2017-02-07 00:08:10 +01:00
Ludovic Courtès b9a5efa596
services: bitlbee: Read the PID file. 
* gnu/services/networking.scm (bitlbee-shepherd-service): Pass
  #:pid-file to 'make-forkexec-constructor'.
 2017-02-07 00:08:10 +01:00
Ludovic Courtès 7597478e2e
file-systems: Add '%network-configuration-files' and '%network-file-mappings'. 
* gnu/system/file-systems.scm (%network-configuration-files)
(%network-file-mappings): New variables.
* guix/scripts/environment.scm (%network-configuration-files): Remove.
(launch-environment/container): Refer to '%network-file-mappings'
instead of calling 'filter-map'.
 2017-02-07 00:08:10 +01:00
Marius Bakke a24fda8114
gnu: bdb: Correct license. 
* gnu/packages/databases.scm (bdb)[license]: Replace with up-to-date
information. Move previous contents to ...
(bdb-5.3)[license]: ... here.
 2017-02-06 17:33:58 +01:00
Marius Bakke 5f0f368630
gnu: dosfstools: Update to 4.1. 
* gnu/packages/disk.scm (dosfstools): Update to 4.1.
[arguments]: Enable tests.
[native-inputs]: Add VIM.
 2017-02-06 14:22:16 +01:00
Marius Bakke d846834fc2
gnu: grub: Update to 2.02rc1. 
* gnu/packages/grub.scm (grub, grub-efi): Update to 2.02rc1.
[arguments]: Don't disable grub_func_test. Remove #:configure-flags.
 2017-02-06 14:22:16 +01:00
Leo Famulari 686d425904
gnu: certbot, python-acme: Update to 0.11.1. 
* gnu/packages/tls.scm (python-acme, python2-acme): Update to 0.11.1.
(certbot): Update to 0.11.1.
[version]: Use python-acme's version.
 2017-02-06 13:46:45 +01:00
Leo Famulari 6edc15798d
gnu: tcpdump: Fetch source from tcpdump.org. 
* gnu/packages/admin.scm (tcpdump)[source]: Remove temporary alternate URL.
 2017-02-06 13:08:59 +01:00
Marius Bakke 416c57f071
gnu: ddrescue: Update to 1.22. 
* gnu/packages/disk.scm (ddrescue): Update to 1.22.
[home-page]: Use HTTPS.
 2017-02-06 12:03:27 +01:00
Sergei Trofimovich cc1c3977d5
gnu: Add re2c. 
* gnu/packages/re2c.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add re2c.scm.

CC: ng0 <contact.ng0@cryptolab.net>
Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-06 10:51:25 +01:00
Ludovic Courtès 36c4917c91
linux-container: Add comment on exception handling. 
* gnu/build/linux-container.scm (run-container): Add note about writing
the exceptions.
 2017-02-06 10:51:25 +01:00
Ludovic Courtès 168aba2978
linux-container: Do not rely on 'isatty?'. 
This avoids problems where 'isatty?' return #t but 'ttyname' fails with
ENOTTY or such.

* gnu/build/linux-container.scm (mount-file-systems): Remove call of
'isatty?'.  Directly call 'ttyname' and catch 'system-error'.
 2017-02-06 10:51:25 +01:00
Danny Milosavljevic e69dc54559
gnu: xonsh: Update to 0.5.3. 
* gnu/packages/shell.scm (xonsh): Update to 0.5.3.
 2017-02-06 10:24:24 +01:00
Danny Milosavljevic 15308f6dc3
gnu: u-boot: Update to 2017.01. 
* gnu/packages/u-boot.scm (u-boot): Update to 2017.01.
 2017-02-06 10:00:24 +01:00
Danny Milosavljevic 40c4e3bbda
gnu: u-boot: Use scandir. 
* gnu/packages/u-boot.scm (make-u-boot-package): Modify.
 2017-02-06 09:53:20 +01:00
Leo Famulari 2d92eca154
gnu: imagemagick: Update to 6.9.7-7. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-7.
 2017-02-06 03:22:55 +01:00
Leo Famulari dd2c73f6a0
gnu: wget: Use libidn2. 
Suggested by Efraim Flashner <efraim@flashner.co.il>.

Fixes support for internationalized domain names.

* gnu/packages/wget.scm (wget)[inputs]: Replace libidn with libidn2.
 2017-02-06 02:33:39 +01:00
Leo Famulari 0418ff7a37
gnu: libidn2: Update to 0.16. 
* gnu/packages/libidn.scm (libidn2): Update to 0.16.
[inputs]: Add libunistring.
 2017-02-06 02:33:31 +01:00
Mark H Weaver 2b742c2bb0
gnu: linux-libre: Update to 4.9.8. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.8.
 2017-02-05 01:22:44 -05:00
Mark H Weaver f719fe5219
gnu: linux-libre@4.4: Update to 4.4.47. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.47.
 2017-02-05 01:20:55 -05:00
José Miguel Sánchez García d160698319
gnu: youtube-dl: Update to 2017.02.01 
* gnu/packages/video.scm (youtube-dl): Update to 2017.02.01.
 2017-02-04 14:53:15 +01:00
ng0 1a0a5509dd
gnu: Add python-lzo. 
* gnu/packages/compression.scm (python-lzo): New variable.

Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
 2017-02-04 14:45:31 +01:00
ng0 1ae60db842
gnu: Add python-lz4. 
* gnu/packages/compression.scm (python-lz4): New variable.
 2017-02-04 14:45:31 +01:00
Marius Bakke 706998e73a
gnu: xscreensaver: Update license URI. 
* gnu/packages/xdisorg.scm (xscreensaver)[license]: Point to current URL.
 2017-02-04 10:45:41 +01:00
Marius Bakke 744dcb4910
gnu: redshift: Remove uneeded input. 
This is a followup to b4c400a75c.

* gnu/packages/xdisorg.scm (redshift): Remove LIBJPEG.
 2017-02-04 10:43:45 +01:00
Marius Bakke 38eefbb185
gnu: wget: Update to 1.19. 
* gnu/packages/wget.scm (wget): Update to 1.19.
[home-page]: Use HTTPS.
 2017-02-04 10:14:43 +01:00
Ben Woodcroft 182dde82ed
gnu: cddlib: Fix source URI. 
* gnu/packages/maths.scm (cddlib)[source]: Update source URI.
 2017-02-04 15:26:26 +10:00
Ludovic Courtès ad167d028e
file-systems: Remove dependency on (guix store). 
(gnu system file-systems) is used on the "build" side since commit
5970e8e248.

* gnu/system/file-systems.scm: Remove dependency on (guix store).
(%store-prefix): New procedure.
* tests/file-systems.scm ("does not pull (guix config)"): New test.
 2017-02-04 02:13:43 +01:00
Ludovic Courtès cf98d342b0
activation: Set the right owner for home directories. 
This fixes a regression introduced in
ae763b5b0b whereby home directories and
skeletons would be root-owned.

* gnu/build/activation.scm (copy-account-skeletons): Make 'directory' a
keyword parameter.  Add #:uid and #:gid and honor them.
[set-owner]: New procedure.
(activate-user-home): Add call to 'getpw' and 'chown'.  Pass UID and GID
to 'copy-account-skeletons'.
* gnu/tests/base.scm (run-basic-test)["skeletons in home directories"]:
Test file ownership under HOME.
 2017-02-04 02:13:43 +01:00
Tobias Geerinckx-Rice 33f7b5d20e
gnu: vim: Update to 8.0.0300. 
* gnu/packages/vim.scm (vim): Update to 8.0.0300.
 2017-02-04 00:27:44 +01:00
Efraim Flashner dfb493ceed
gnu: abcde: Update to 2.8.1. 
* gnu/packages/cdrom.scm (abcde): Update to 2.8.1.
 2017-02-03 22:33:49 +02:00
Efraim Flashner 1ac675a583
gnu: p7zip: Fix CVE-2016-9256. 
* gnu/packages/compression.scm (p7zip)[source]: Add patch.
* gnu/packages/patches/p7zip-CVE-2016-9296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-02-03 22:17:41 +02:00
Efraim Flashner b352b57655
gnu: qemu: Patch CVE-2017-{2615, 5578, 5579, 5856}. 
* gnu/packages/qemu.scm (qemu)[source]: Add patches.
* gnu/packages/patches/qemu-CVE-2017-2615,
gnu/packages/patches/qemu-CVE-2017-5578,
gnu/packages/patches/qemu-CVE-2017-5579,
gnu/packages/patches/qemu-CVE-2017-5856: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-02-03 21:56:35 +02:00
Thomas Danckaert 3e9750c368
gnu: Add emacs-mew. 
* gnu/packages/mail.scm (emacs-mew): New variable.

Co-authored-by: Alex Kost <alezost@gmail.com>
 2017-02-03 22:50:20 +03:00
Adonay Felipe Nogueira efc12a81ad
gnu: abbaye: Update to 2.0.1. 
* gnu/packages/games.scm: (abbaye): Update to 2.0.1.
[snippet]: Delete the bundled fonts.
[arguments]: Adjust 'patch-makefile' phase to patch only Makefile.  Add
"CC" make flag.
[inputs]: Use only required sdl2 packages.
[home-page]: Update to the new location.
[license]: Use the proper license.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-02-03 22:50:20 +03:00
Raoul Jean Pierre Bonnal c6dced88f2
gnu: Add r-rann. 
* gnu/packages/statistics.scm (r-rann): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:21:22 -05:00
Raoul Jean Pierre Bonnal 37337699d7
gnu: Add r-randomforest. 
* gnu/packages/statistics.scm (r-randomforest): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-03 14:12:51 -05:00
Efraim Flashner f2de078a10
gnu: git: Update to 2.11.1. 
* gnu/packages/version-control.scm (git): Update to 2.11.1.
 2017-02-03 19:54:30 +02:00
Efraim Flashner effd7198b9
gnu: zpaq: Tune for 'generic-armv7-a' on armhf. 
* gnu/packages/compression.scm (zpaq)[arguments]: Change the CXXFLAGS so
on armhf-linux we build with '-mtune=generic-armv7-a' and not '-mtune=generic'.
 2017-02-03 19:17:47 +02:00
Tobias Geerinckx-Rice 89eb56f05f
gnu: fish: Update to 2.5.0. 
* gnu/packages/shells.scm (fish): Update to 2.5.0.
[native-inputs]: Add autoconf, automake, and libtool.
[arguments]: Add ‘bootstrap’ phase.
 2017-02-03 15:06:08 +01:00
Mark H Weaver 883aab6462
gnu: linux-libre: Update to 4.9.7. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.7.
 2017-02-03 00:50:04 -05:00
Mark H Weaver 942f38ea7f
gnu: linux-libre@4.4: Update to 4.4.46. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.46.
 2017-02-03 00:48:55 -05:00
ng0 345504c79d
gnu: Add no-more-secrets. 
* gnu/packages/games.scm (no-more-secrets): New variable.

Signed-off-by: Eric Bavier <bavier@member.fsf.org>
 2017-02-02 20:34:15 -06:00
Eric Bavier 2d1ac1d1b0
gnu: thefuck: Fix execution. 
Follow-up to 4a6b2a21bf

* gnu/packages/admin.scm (thefuck): Fix 'inputs' -> 'native-inputs'.
 2017-02-02 20:32:53 -06:00
Ludovic Courtès d2a5e6982d
file-systems: Add 'file-system-mapping->bind-mount'. 
* gnu/system/file-systems.scm (file-system-mapping->bind-mount): New
procedure.
* gnu/system/linux-container.scm (mapping->file-system): Remove.
(containerized-operating-system)[mapping->fs]: Use
'file-system-mapping->bind-mount' instead of 'mapping->file-system'.
* guix/scripts/environment.scm (launch-environment/container): Likewise.
 2017-02-03 00:23:28 +01:00
Ludovic Courtès 0f31d4f07f
gnu: guile-json: Texinfoify description. 
* gnu/packages/guile.scm (guile-json)[description]: Use Texinfo markup.
 2017-02-03 00:23:28 +01:00
Marius Bakke feeeee2418
gnu: gst-plugins-base: Fix build on 32bit. 
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
 2017-02-02 16:55:35 +01:00
Leo Famulari 8f8d39b30c
gnu: icedtea-8: Update to 3.3.0 [security fixes]. 
Fixes CVE-2016-{2183,5546,5547,5548,5549,5552} and
CVE-2017-{3231,3241,3252,3253,3260,3261,3272,3289}.

* gnu/packages/java.scm (icedtea-8): Update to 3.3.0.
 2017-02-02 07:58:45 -05:00
Alex Kost 3e27581887
gnu: emacs-with-editor: Update to 2.5.10. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.10.
 2017-02-02 12:02:39 +03:00
Nicolas Goaziou 1e458a430d
gnu: giac-xcas: Update to 1.2.3-19. 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.3-19.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-02 09:04:40 +01:00
Mathieu Othacehe eb122280a0
services: cuirass: Add load-path to cuirass configuration 
* gnu/services/cuirass.scm (<cuirass-configuration>): Add load-path field.
(cuirass-shepherd-service): Honor it.
* doc/guix.texi (Continuous Integration): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-02 09:04:40 +01:00
Mathieu Othacehe 7a9ca44a9c
gnu: cuirass: Update to 0.0.1 revision 4. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-02 09:04:40 +01:00
Eric Bavier 7904f18af2
gnu: joe: remove reference to WordStar. 
* gnu/packages/text-editors.scm (joe)[description]: Remove WordStar reference.
 2017-02-01 19:11:46 -06:00
ng0 c000b6b10f
gnu: reducelcs: Fix license. 
* gnu/packages/maths.scm (reducelcs)[license]: Change to GPL3+.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-01 19:51:36 -05:00
Leo Famulari a3df7e9f86
gnu: httpd: Update to 2.4.25 [fixes CVE-2016-{0736,2161,5387,8743}]. 
* gnu/packages/web.scm (httpd): Update to 2.4.25.
[source]: Remove obsolete patch 'httpd-CVE-2016-8740.patch'.
* gnu/packages/patches/httpd-CVE-2016-8740.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-02-01 18:14:55 -05:00
Leo Famulari 4a6b2a21bf
gnu: acme-client: Update to 0.1.16. 
* gnu/packages/tls.scm (acme-client): Update to 0.1.16.
 2017-02-01 18:05:01 -05:00
Clément Lassieur 60b57c3d5b
gnu: magit: Update to 2.10.1. 
* gnu/packages/emacs.scm (magit): Update to 2.10.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-01 23:53:35 +01:00
Huang Ying 728dc8fa29
gnu: Add polkit-gnome. 
* gnu/packages/polkit.scm (polkit-gnome): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-01 23:53:35 +01:00
ng0 7596ddf3f1
gnu: Add neomutt. 
* gnu/packages/mail.scm (neomutt): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-02-01 23:53:35 +01:00
Ludovic Courtès 8de3e4b35f
services: Make 'static-networking' extensible. 
This allows users to statically define several interfaces.

* gnu/services/networking.scm (<static-networking>)[provision]
[name-servers]: Add default values.
(static-networking-shepherd-service)
(static-networking-etc-files)
(static-networking-shepherd-services): New procedures.
(static-networking-service-type): Change to extend both
SHEPHERD-ROOT-SERVICE-TYPE and ETC-SERVICE-TYPE.
(static-networking-service): Remove default value of #:provision.
Implement using 'simple-service'.
* gnu/services/base.scm (%base-services): Replace
'static-networking-service' call with 'service' form.
* doc/guix.texi (Networking Services): Update documentation.
 2017-02-01 23:53:35 +01:00
Marius Bakke fd05d7ecd9
gnu: libevent: Skip tests that fail on 32bit. 
* gnu/packages/patches/libevent-2.1-skip-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/libevent.scm (libevent)[source]: Use it.
 2017-02-01 22:38:25 +01:00
Ricardo Wurmus 47055b273a
gnu: r-edger: Add r-statmod to inputs. 
* gnu/packages/bioinformatics.scm (r-edger)[propagated-inputs]: Add r-statmod.
 2017-02-01 22:12:01 +01:00
Arun Isaac 5430dbd95b
gnu: Add freeciv. 
* gnu/packages/games.scm (freeciv): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-02-01 14:45:06 -05:00
Tobias Geerinckx-Rice 36df995c94
gnu: Add zpaq. 
* gnu/packages/compression.scm (zpaq): New variable.
 2017-02-01 16:13:57 +01:00
Tobias Geerinckx-Rice 58f91e4d03
download: url-fetch/tarball: Make ‘name’ truly optional. 
* guix/download.scm (url-fetch/tarbomb): Fall back to ‘file-name’ if
‘name’ is #f, like the regular ‘url-fetch’ does.
* gnu/packages/bioinformatics.scm (muscle)[source]: Remove ‘file-name’.
* gnu/packages/engineering.scm (fastcap)[source]: Likewise.
* gnu/packages/scheme.scm (scmutils)[source]: Likewise.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice 61ac754453
gnu: Add nyx. 
* gnu/packages/tor.scm (nyx): New variable.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice 71794d7b94
gnu: tor: Use ‘license:’ prefix instead of #:select. 
* gnu/packages/tor.scm (tor, torsocks, privoxy, onionshare)[license]:
Add prefix.
 2017-02-01 15:53:32 +01:00
Tobias Geerinckx-Rice cf1bed97ca
gnu: youtube-dl: Update to 2017.01.29. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.29.
 2017-02-01 15:53:31 +01:00
Tobias Geerinckx-Rice 0bb1c35ac1
gnu: python-stem: Update to 1.5.4. 
* gnu/packages/python.scm (python-stem): Update to 1.5.4.
 2017-02-01 15:53:31 +01:00
Marius Bakke 3e32eeb247
gnu: gstreamer: Update to 1.10.3. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.3.
(gst-plugins-base): Likewise.
(gst-plugins-good): Likewise.
(gst-plugins-bad): Likewise.
(gst-plugins-ugly): Likewise.
(gst-libav): Likewise.
(python-gst): Likewise.
 2017-02-01 15:16:07 +01:00
Marius Bakke b2a6310ad9
gnu: xf86-video-intel: Update to 2.99.917-2-9fe04af. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-2-9fe04af.
 2017-02-01 15:05:50 +01:00
Marius Bakke ac6fec05e4
gnu: fio: Enable optional helper scripts. 
* gnu/packages/benchmark.scm (fio)[arguments]: Add 'patch-paths' and
'wrap-python-scripts' phases.
[inputs]: Add GNUPLOT, PYTHON-2, PYTHON2-NUMPY and PYTHON2-PANDAS.
 2017-02-01 14:13:55 +01:00
Marius Bakke 5fa1683617
gnu: fio: Update to 2.17. 
* gnu/packages/benchmark.scm (fio): Update to 2.17.
 2017-02-01 13:52:27 +01:00
Marius Bakke d736eec2ad
gnu: lftp: Update to 4.7.5. 
* gnu/packages/ftp.scm (lftp): Update to 4.7.5.
[source]: Rearrange mirrors.
 2017-02-01 13:52:27 +01:00
Marius Bakke 69ec039105
gnu: mumble: Update to 1.2.19. 
* gnu/packages/telephony.scm (mumble): Update to 1.2.19.
 2017-02-01 13:52:27 +01:00
Marius Bakke 75ba11afc2
gnu: xapian: Update to 1.4.3. 
* gnu/packages/search.scm (xapian): Update to 1.4.3.
 2017-02-01 13:52:27 +01:00
Danny Milosavljevic 4ae2a54df6
gnu: dtc: Update description to reference HOWTO. 
* gnu/packages/u-boot.scm (dtc)[description]: Modify.
 2017-02-01 13:49:55 +01:00
Ludovic Courtès 357db1f91d
system: More 'file-append' instead of #~(string-append #$thing …). 
* gnu/system/shadow.scm (<user-account>)[shell]: Use 'file-append'.
(%base-user-accounts): Likewise.
* gnu/system/grub.scm (%background-image): Likewise.
 2017-02-01 12:36:41 +01:00
Ludovic Courtès ae763b5b0b
system: Create home directories once 'file-systems' is up. 
Fixes <http://bugs.gnu.org/21108>.
Reported by Andy Patterson <ajpatter@uwaterloo.ca>
and Leo Famulari <leo@famulari.name>.

* gnu/build/activation.scm (activate-users+groups)[activate-user]: Pass
  #:create-home? #t iff CREATE-HOME? and SYSTEM?.
(activate-user-home): New procedure.
* gnu/system/shadow.scm (account-shepherd-service): New procedure.
(account-service-type)[extensions]: Add SHEPHERD-ROOT-SERVICE-TYPE
extension.
* gnu/tests/base.scm (run-basic-test)["home"]
["skeletons in home directories"]: New tests.
* gnu/tests/install.scm (%separate-home-os, %separate-home-os-source)
(%test-separate-home-os): New variables.
 2017-02-01 12:36:41 +01:00
Leo Famulari 524ee6c9e5
gnu: nginx: Update to 1.11.9. 
* gnu/packages/web.scm (nginx): Update to 1.11.9.
 2017-02-01 01:42:39 -05:00
Eric Bavier 25925725f4
gnu: mg: Upgrade to 20161005. 
* gnu/packages/mg.scm (mg)[source]: Upgrade to 20161005.
[native-inputs]: Add pkg-config.
[inputs]: Add libbsd.
[arguments]: Use modify-phases.  Use #:make-flags rather than patching the
Makefile.  Install tutorial.
[description]:  Clarify relation to GNU Emacs.
 2017-01-31 21:16:08 -06:00
Eric Bavier f255a6db17
gnu: Add JOE. 
* gnu/packages/text-editors.scm (joe): New variable.
 2017-01-31 20:26:20 -06:00
Marius Bakke e8fc1a0dcf
gnu: libevent: Update to 2.1.8 [security fixes]. 
* gnu/packages/libevent.scm (libevent): Update to 2.1.8.
[inputs]: Change 'python-wrapper' to 'python-2'. Move 'which' to ...
[native-inputs]: ... here. New field.
(libevent-2.0): New variable.
* gnu/packages/patches/libevent-2.1-dns-tests.patch,
  gnu/packages/patches/libevent-2.0-evdns-fix-remote-stack-overread.patch
  gnu/packages/patches/libevent-2.0-evdns-fix-searching-empty-hostnames.patch
  gnu/packages/patches/libevent-2.0-evutil-fix-buffer-overflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Change 'libevent' to 'libevent-2.0'.
 2017-02-01 02:42:12 +01:00
Ludovic Courtès fae88ae884
gnu: mdadm: Update to 4.0. 
* gnu/packages/linux.scm (mdadm): Update to 4.0.
[arguments]: Add "CC=gcc" to #:make-flags.
 2017-01-31 23:48:59 +01:00
Ludovic Courtès 4fc6985c1c
gnu: parallel: Update to 20170122. 
* gnu/packages/parallel.scm (parallel): Update to 20170122.
 2017-01-31 23:46:34 +01:00
Ludovic Courtès 8555a609df
gnu: kbd: Update to 2.0.4. 
* gnu/packages/linux.scm (kbd): Update to 2.0.4.
 2017-01-31 23:45:56 +01:00
Ludovic Courtès c886608e6b
gnu: gdb: Update to 7.12.1. 
* gnu/packages/gdb.scm (gdb): Update to 7.12.1.
 2017-01-31 23:44:57 +01:00
Ludovic Courtès 5f8edd7f37
gnu: xcalc: Update to 1.0.6. 
* gnu/packages/xorg.scm (xcalc): Update to 1.0.6.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès a43aca973e
system: Introduce 'file-systems' Shepherd service. 
* gnu/services/base.scm (file-system-shepherd-services): New procedure.
(file-system-service-type): Use it as the SHEPHERD-ROOT-SERVICE-TYPE
extension.
(user-processes-service-type): Change to take a single 'grace-delay'
parameter.
(user-processes-service): Remove 'file-systems' parameter.  Pass
GRACE-DELAY as the only value for the service.
* gnu/system.scm (essential-services): Adjust accordingly.
 2017-01-31 23:21:59 +01:00
Ludovic Courtès 2fe4ceee18
file-systems: Do not read superblocks past the end of a device. 
Fixes <http://bugs.gnu.org/25573>.
Reported by Alex Kost <alezost@gmail.com>.

* gnu/build/file-systems.scm (seek*): New procedure.
(read-superblock): Use it instead of 'seek' and ensure it returns
OFFSET.
 2017-01-31 23:21:59 +01:00
Raoul Jean Pierre Bonnal 69f2b3bdf9
gnu: Add r-rhdf5. 2017-01-31 22:35:11 +01:00
Raoul Jean Pierre Bonnal d4af25b51b
gnu: Add r-tximport. 2017-01-31 22:35:08 +01:00
Julien Lepiller f5c8cf3be7
gnu: Add ocaml-bin-prot. 
* gnu/packages/ocaml.scm (ocaml-bin-prot): New variable.
 2017-01-31 21:35:51 +01:00
Julien Lepiller f95ebba516
gnu: Add ocaml-js-build-tools. 
* gnu/packages/ocaml.scm (ocaml-js-build-tools): New variable.
 2017-01-31 21:35:45 +01:00
Julien Lepiller 5eed45a8d7
gnu: Add ocaml-oasis. 
* gnu/packages/ocaml.scm (ocaml-oasis): New variable.
 2017-01-31 21:35:42 +01:00
Julien Lepiller 77a515e9b5
gnu: Add ocaml-fileutils. 
* gnu/packages/ocaml.scm (ocaml-fileutils): New variable.
 2017-01-31 21:35:38 +01:00
Julien Lepiller 3763eea716
gnu: Add ocaml-expect. 
* gnu/packages/ocaml.scm (ocaml-expect): New variable.
 2017-01-31 21:35:35 +01:00
Julien Lepiller f8a12de1cb
gnu: Add ocaml-pcre. 
* gnu/packages/ocaml.scm (ocaml-pcre): New variable.
 2017-01-31 21:35:32 +01:00
Julien Lepiller 0e9e94b7ff
gnu: Add ocaml-batteries. 
* gnu/packages/ocaml.scm (ocaml-batteries): New variable.
 2017-01-31 21:35:30 +01:00
Julien Lepiller 41e8e07919
gnu: Add omake. 
* gnu/packages/ocaml.scm (omake): New variable.
* gnu/packages/patches/omake-fix-non-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.
 2017-01-31 21:35:27 +01:00
Julien Lepiller c590f1ae8a
gnu: Add ocamlify. 
* gnu/packages/ocaml.scm (ocamlify): New variable.
 2017-01-31 21:35:23 +01:00
Julien Lepiller 5d08f98d3e
gnu: Add ocaml-base64. 
* gnu/packages/ocaml.scm (ocaml-base64): New variable.
 2017-01-31 21:34:53 +01:00
Thomas Danckaert 59ae241f71
gnu: Add xinetd. 
* gnu/packages/web.scm (xinetd): New variable.
* gnu/packages/patches/xinetd-CVE-2013-4342.patch,
gnu/packages/patches/xinetd-fix-fd-leak.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-31 15:06:19 -05:00
Ricardo Wurmus 9b11eee955
gnu: Add neovim. 
* gnu/packages/vim.scm (neovim): New variable.
 2017-01-31 21:01:53 +01:00
Ricardo Wurmus d9ed1779b8
gnu: Add lua5.2-lpeg. 
* gnu/packages/lua.scm (lua5.2-lpeg): New variable.
 2017-01-31 20:39:39 +01:00
Ricardo Wurmus cf9a788d93
gnu: Add lua5.2-bitop. 
* gnu/packages/lua.scm (lua5.2-bitop): New variable.
 2017-01-31 20:36:30 +01:00
Ricardo Wurmus 369ee96b69
gnu: Add lua5.2-libmpack. 
* gnu/packages/serialization.scm (lua5.2-libmpack): New variable.
 2017-01-31 20:36:09 +01:00
Ricardo Wurmus 8e664e7e55
gnu: Add lua-libmpack. 
* gnu/packages/serialization.scm (lua-libmpack): New variable.
 2017-01-31 20:35:54 +01:00
Ricardo Wurmus c57e5fd0c0
gnu: Add libmpack. 
* gnu/packages/serialization.scm (libmpack): New variable.
 2017-01-31 20:34:01 +01:00
Paul Garlick 8a4d14fa71
gnu: gmsh: Update to 2.16.0 
* gnu/packages/maths.scm (gmsh): Update to 2.16.0

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-31 17:55:50 +01:00
Ben Woodcroft abb7eb7aca
gnu: bundler: Update to 1.14.3. 
* gnu/packages/ruby.scm (bundler): Update to 1.14.3.
 2017-01-31 20:16:11 +10:00
ng0 249eb38965
gnu: tor: Add hardening configure-flags. 
* gnu/packages/tor.scm (tor)[arguments]: Add '--enable-expensive-hardening',
'enable-gcc-hardening', '--enable-linker-hardening' to configure-flags.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-31 00:10:44 +01:00
Leo Famulari af7d72b16c
gnu: tcpdump: Update to 4.9.0 [security fixes]. 
Fixes CVE-2016-{7922,7923,7924,7925,7926,7927,7928,7929,7930,7931,7932,7933
7934,7935,7936,7937,7938,7939,7940,7973,7974,7975,7983,7984,7985,7986,7992,7993,
8574,8575} and CVE-2017-{5202,5203,5204,5205,5341,5342,5482,5483,5484,5485,
5486}.

* gnu/packages/admin.scm (tcpdump): Update to 4.9.0.
[source]: Add alternate URL and set the file-name.
 2017-01-30 15:51:32 -05:00
Leo Famulari df4a2b44d3
gnu: libpcap: Update to 1.8.1. 
* gnu/packages/admin.scm (libpcap): Update to 1.8.1.
 2017-01-30 14:49:42 -05:00
Marius Bakke 5a12bdaf8c
gnu: bitlbee: Update to 3.5.1 [security fixes]. 
* gnu/packages/messaging.scm (bitlbee): Update to 3.5.1.
[source]: Remove patches.
(%bitlbee-buddy-nick-change-patch): Remove.
(%bitlbee-always-use-nicks-patch): Remove.
 2017-01-30 19:48:09 +01:00
Marius Bakke d3c6ad0ab5
gnu: Add rocksdb. 
* gnu/packages/databases.scm (rocksdb): New variable.
 2017-01-30 16:52:29 +01:00
Marius Bakke d14ad134f1
gnu: xauth: Update to 1.0.10. 
* gnu/packages/xorg.scm (xauth): Update to 1.0.10.
 2017-01-30 16:17:43 +01:00
Marius Bakke 4a9c4a55ac
gnu: re2: Update to 2017-01-01. 
* gnu/packages/regex.scm (re2): Update to 2017-01-01.
[arguments]: End 'delete-static-library' phase on #t.
 2017-01-30 14:55:10 +01:00
Federico Beffa d8e85b2032
gnu: ghc-8: Update to 8.0.2. 
* gnu/packages/haskell.scm (ghc-8): Update to 8.0.2.
  [arguments]: Remove #:modules, #:imported-modules and phase
  configure-testsuite.
* gnu/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-01-30 14:39:35 +01:00
ng0 54052a54c1
gnu: Add reducelcs. 
* gnu/packages/maths.scm (reducelcs): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-01-30 07:46:28 -05:00
Roel Janssen aa3eeeb542
gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5. 
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
  New variable.
 2017-01-30 12:11:04 +01:00
José Miguel Sánchez García 01be4f939e
gnu: Add light. 
* gnu/packages/linux.scm (light): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
José Miguel Sánchez García 83421fc744
gnu: Add font-awesome. 
* gnu/packages/fonts.scm (font-awesome): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
Paul Garlick 5d4bd4cce1
gnu: Add opencascade-oce. 
* gnu/packages/maths.scm (opencascade-oce): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-30 10:52:45 +01:00
ng0 9016dbc2bb
gnu: Add catimg. 
* gnu/packages/image-viewers.scm (catimg): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
 2017-01-29 19:42:03 -05:00
Danny Milosavljevic 4fdcc5026f
gnu: Add dub. 
* gnu/packages/ldc.scm (dub): New variable.
 2017-01-29 23:46:33 +01:00
Leo Famulari 4bca1e7498
gnu: khal: Update to 0.9.1. 
* gnu/packages/calendar.scm (khal): Update to 0.9.1.
 2017-01-29 13:04:44 -05:00
Nicolas Goaziou cf95bd3a8d
gnu: emacs-org: Update to 20170124. 
* gnu/packages/emacs.scm (emacs-org): Update to 20170124.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-29 01:03:19 +01:00
Nicolas Goaziou 49a984ce3e
gnu: wireshark: Update to 2.2.4. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.4.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-29 01:03:19 +01:00
Nicolas Goaziou f1fb375b21
gnu: asymptote: Update to 2.39 
* gnu/packages/plotutils.scm (asymptote): Update to 2.39.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-29 01:03:19 +01:00
Tobias Geerinckx-Rice d389b6bbbc
gnu: vim: Update to 8.0.0257. 
* gnu/packages/vim.scm (vim): Update to 8.0.0257.
 2017-01-28 22:55:10 +01:00
Clément Lassieur c631233fd4
gnu: Add GNU Freetalk. 
* gnu/packages/messaging.scm (freetalk): New variable.

Signed-off-by: Mathieu Lirzin <mthl@gnu.org>
 2017-01-28 22:22:03 +01:00
Tobias Geerinckx-Rice 09e353d846
gnu: exfat-utils: Update to 1.2.6. 
* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.6.
 2017-01-28 21:54:58 +01:00
Tobias Geerinckx-Rice 9ff04ff725
gnu: fuse-exfat: Update to 1.2.6. 
* gnu/packages/linux.scm (fuse-exfat): Update to 1.2.6.
 2017-01-28 21:54:20 +01:00
Ludovic Courtès 55b2d92145
Use 'mlambda' instead of 'memoize'. 
* gnu/packages.scm (find-newest-available-packages): Use 'mlambda'
instead of (memoize (lambda ...) ...).
* gnu/packages/bootstrap.scm (package-with-bootstrap-guile): Likewise.
* guix/build-system/gnu.scm (package-with-explicit-inputs)[rewritten-input]:
Likewise.
* guix/build-system/python.scm (package-with-explicit-python)[transform]:
Likewise.
* guix/derivations.scm (derivation->string): Likewise.
* guix/gnu-maintenance.scm (gnu-package?): Likewise.
* guix/modules.scm (module-file-dependencies): Likewise.
* guix/scripts/graph.scm (standard-package-set): Likewise.
* guix/scripts/lint.scm (official-gnu-packages*): Likewise.
* guix/store.scm (store-regexp*): Likewise.
* guix/utils.scm (location): Likewise.
 2017-01-28 18:55:20 +01:00
Ludovic Courtès f9704f179a
Add (guix memoization). 
* guix/combinators.scm (memoize): Remove.
* guix/memoization.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
guix/build-system/gnu.scm, guix/build-system/python.scm,
guix/derivations.scm, guix/gnu-maintenance.scm,
guix/import/cran.scm, guix/import/elpa.scm,
guix/modules.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/store.scm, guix/utils.scm: Adjust imports accordingly.
 2017-01-28 18:55:20 +01:00
Mathieu Othacehe c695ed3cf5
gnu: Add emacs-mu4e-alert. 
* gnu/packages/emacs.scm (emacs-mu4e-alert): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-01-28 12:41:35 +03:00
Mathieu Othacehe 2c5e31faac
gnu: Add emacs-alert. 
* gnu/packages/emacs.scm (emacs-alert): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-01-28 12:41:35 +03:00
Mathieu Othacehe ba117841cd
gnu: Add emacs-gntp. 
* gnu/packages/emacs.scm (emacs-gntp): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-01-28 12:41:35 +03:00
Mathieu Othacehe 521f5d96f7
gnu: Add emacs-log4e. 
* gnu/packages/emacs.scm (emacs-log4e): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-01-28 12:41:35 +03:00
Mathieu Othacehe 1e523180ae
gnu: Add emacs-ht. 
* gnu/packages/emacs.scm (emacs-ht): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-01-28 12:41:35 +03:00
Alex Kost 1c6713465f
gnu: tvtime: Update to 1.0.11. 
* gnu/packages/tv.scm (tvtime): Update to 1.0.11.
 2017-01-28 12:41:35 +03:00
Alex Kost eccfa301f8
gnu: manaplus: Update to 1.7.1.21. 
* gnu/packages/games.scm (manaplus): Update to 1.7.1.21.
 2017-01-28 12:41:35 +03:00
Leo Famulari aaf111a2c4
gnu: transmission-remote-cli: Superseded by tremc. 
* gnu/packages/bittorrent.scm (transmission-remote-cli)[properties]: New field.
 2017-01-28 03:34:14 -05:00
Leo Famulari e906f4e116
gnu: Add tremc. 
* gnu/packages/bittorrent.scm (tremc): New variable.
 2017-01-28 03:34:13 -05:00
Leo Famulari 4ab09ac868
gnu: ldc: Add missing patches. 
This is a followup to commit 2429dde57d.

* gnu/packages/patches/ldc-1.1.0-disable-dmd-tests.patch,
gnu/packages/patches/ldc-1.1.0-disable-phobos-tests.patch: New files.
 2017-01-28 03:07:57 -05:00
宋文武 0050876bcf
gnu: assword: Wrap with the GObject typelib of GTK+. 
Fixes <https://debbugs.gnu.org/25457>.

* gnu/packages/password-utils.scm (assword)[inputs]: Add 'gtk+'.
[arguments]: Add 'wrap-assword' phase.
 2017-01-28 12:30:50 +08:00
宋文武 736cfc10f0
gnu: python-xdo: Hardcode the path of 'libxdo.so'. 
* gnu/packages/python.scm (python-xdo)[arguments]: Add 'patch-libxdo-path'
phase.
 2017-01-28 12:30:41 +08:00
宋文武 0b5e08637e
gnu: python-xdo: Add 'python-six' to 'propagated-inputs'. 
* gnu/packages/python.scm (python-xdo)[propagated-inputs]: New field.
 2017-01-28 12:02:34 +08:00
宋文武 bd05ea41b6
gnu: gtksourceview-2: Adjust inputs. 
Fixes <https://debbugs.gnu.org/25537>.

* gnu/packages/gtk.scm (gtksourceview-2): Move 'shared-mime-info' and
'xorg-server' to 'native-inputs'.  Move 'gtk+-2' to 'propagated-inputs'.
 2017-01-28 11:29:12 +08:00
Muriithi Frederick Muriuki 2429dde57d
gnu: Add ldc@1.1.0-beta6. 
* gnu/packages/ldc.scm (ldc-1.1.0-beta6, ldc-beta): New variables.
* gnu/packages/patches/ldc-1.1.0-disable-dmd-tests.patch: New file.
* gnu/packages/patches/ldc-1.1.0-disable-phobos-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-28 01:25:55 +01:00
Ludovic Courtès 38cb4766d8
gnu: emacs-emms: Add 'upstream-name' property. 
* gnu/packages/emacs.scm (emms)[properties]: New field.
 2017-01-28 00:38:20 +01:00
Tobias Geerinckx-Rice d61b2482df
gnu: offlineimap: Update to 7.0.13. 
* gnu/packages/mail.scm (offlineimap): Update to 7.0.13.
 2017-01-27 21:05:57 +01:00
Tobias Geerinckx-Rice eb714a10fa
gnu: btrfs-progs: Update to 4.9.1. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.9.1.
 2017-01-27 17:18:04 +01:00
Ricardo Wurmus 43337a733f
gnu: extremetuxracer: Update to 0.7.4. 
* gnu/packages/games.scm (extremetuxracer): Update to 0.7.4.
 2017-01-27 11:30:35 +01:00
Mark H Weaver 88dbf70f29
gnu: linux-libre: Update to 4.9.6. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.6.
 2017-01-26 21:49:01 -05:00
Mark H Weaver e1157d69f4
gnu: linux-libre@4.4: Update to 4.4.45. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.45.
 2017-01-26 21:47:05 -05:00
Troy Sankey cda0ef045f
gnu: pius: Update to 2.2.3. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.3.
[source]: Switch back to using the tarball release.
[arguments]: End 'set-gpg-file-name' phase on #t.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-27 01:29:11 +01:00
Carlo Zancanaro 95757d8999
gnu: kakoune: Move reproducibility substitution to source snippet. 
* gnu/packages/text-editors.scm (kakoune)[arguments]: Move substitution to ...
[source]: ... here.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-27 01:28:36 +01:00
Leo Famulari 70852355e6
gnu: openssl-next: Update to 1.1.0d [fixes CVE-2017-{3730, 3731, 3732}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0d.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-26 22:26:20 +01:00
Leo Famulari 544db93caf
gnu: openssl: Replace with openssl-1.0.2k [security fixes]. 
Fix CVE-2016-7055 and CVE-2017-{3731,3732}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2k): New variable.
(openssl-next)[replacement]: New field.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-26 22:26:12 +01:00
Marius Bakke 264ccbb31e
gnu: text-editors.scm: Fix imports. 
This is a followup to 5613ea79fc.

* gnu/packages/text-editors.scm: Import (gnu packages terminals).
 2017-01-26 22:12:13 +01:00
Carlo Zancanaro 5613ea79fc
gnu: Add kakoune. 
* gnu/packages/text-editors.scm (kakoune): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-26 21:16:57 +01:00
Tobias Geerinckx-Rice 5bbb224916
gnu: python-pbr: Update to 1.10.0. 
* gnu/packages/python.scm (python-pbr): Update to 1.10.0.
 2017-01-26 21:05:06 +01:00
Tobias Geerinckx-Rice 0e6df70b6a
gnu: python-wheel: Update to 0.30.0a0. 
* gnu/packages/python.scm (python-wheel): Update to 0.30.0a0.
 2017-01-26 21:05:05 +01:00
Tobias Geerinckx-Rice 60a8be3a56
gnu: awscli: Update to 1.11.43. 
* gnu/packages/python.scm (awscli): Update to 1.11.43.
[home-page]: Use HTTPS.
 2017-01-26 21:05:05 +01:00
Tobias Geerinckx-Rice d338ff580d
gnu: python-acme: Update to 0.10.2. 
* gnu/packages/tls.scm (python-acme): Update to 0.10.2.
 2017-01-26 21:05:05 +01:00
Tobias Geerinckx-Rice 80968df0d0
gnu: certbot: Update to 0.10.2. 
* gnu/packages/tls.scm (certbot): Update to 0.10.2.
[description]: Use present tense; expand acronyms.
 2017-01-26 21:05:04 +01:00
Tobias Geerinckx-Rice 28576403af
gnu: python-certifi: Update to 2017.1.23. 
* gnu/packages/python.scm (python-certifi): Update to 2017.1.23.
[arguments]: Remove: run tests if they're ever added.
[home-page]: Fix or update.
 2017-01-26 21:05:04 +01:00
John Darrington fc12bc3099
gnu: Add xcalc. 
* gnu/packages/xorg.scm (xcalc): New variable.
 2017-01-26 19:45:22 +01:00
Marius Bakke 9d58741a50
gnu: xf86-input-wacom: Update to 0.34.0. 
* gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.34.0.
 2017-01-26 17:12:32 +01:00
Marius Bakke 602d70f31e
gnu: dnscrypt-proxy: Update to 1.9.4. 
* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.9.4.
 2017-01-26 16:27:07 +01:00
Tobias Geerinckx-Rice ec8fdd3bf8
gnu: wine: Update to 2.0. 
* gnu/packages/wine.scm (wine): Update to 2.0.
 2017-01-26 08:52:06 +01:00
Tobias Geerinckx-Rice eff8d773d6
gnu: python-mistune: Fix source URI. 
* gnu/packages/python.scm (python-mistune)[source]: Use pypi-uri.
 2017-01-26 08:15:09 +01:00
Tobias Geerinckx-Rice 911a8fafb2
gnu: python-redis: Update to 2.10.5. 
* gnu/packages/python.scm (python-redis): Update to 2.10.5.
[source]: Use pypi-uri.
 2017-01-26 08:07:03 +01:00
Ben Woodcroft bfaf8efd74
gnu: ruby-minitar: Update to 0.5.4-1.e25205ec. 
Fixes the security-related issue reported at
http://seclists.org/oss-sec/2017/q1/178.

* gnu/packages/ruby.scm (ruby-minitar): Update to 0.5.4-1.e25205ec.
[source]: Use GitHub URL.
 2017-01-26 08:15:22 +10:00
Mathieu Othacehe 70dfa4e07a
services: Export guix-configuration getters. 
* gnu/services/base.scm (guix-configuration-*): Export.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-25 19:04:21 +01:00
Thomas Danckaert 864042c5c5
gnu: Add stunnel. 
* gnu/packages/web.scm (stunnel): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-25 14:30:36 +01:00
Clément Lassieur e57bd0bed8
services: Fix 'mkdir-p' in activation scripts. 
* gnu/services/cups.scm (%cups-activation): Import (guix build utils).
* gnu/services/mail.scm (opensmtpd-activation): Idem.
* gnu/services/networking.scm (ntp-service-activation): Idem.
* gnu/services/spice.scm (spice-vdagent-activation): Idem.
* gnu/services/ssh.scm (openssh-activation): Idem.
  (dropbear-activation): Idem.
* gnu/services/vpn.scm (%openvpn-activation): Idem.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-25 14:05:37 +01:00
Mark H Weaver ad91454281
gnu: icecat: Add more fixes from upstream mozilla-esr45. 
Includes fixes for CVE-2017-5373, CVE-2017-5375, CVE-2017-5376, CVE-2017-5378,
CVE-2017-5380, CVE-2017-5383, CVE-2017-5386, CVE-2017-5390, and CVE-2017-5396.

* gnu/packages/gnuzilla.scm (icecat)[source]: Rename existing patches to
reflect newly announced CVE assignments.  Add selected fixes from upstream
mozilla-esr45.
 2017-01-25 02:23:15 -05:00
Marius Bakke 5e217a8b4b
gnu: python-debian: Fix URL. 
* gnu/packages/python.scm (python-debian)[source]: Use 'pypi-uri'.
 2017-01-25 01:11:57 +01:00
Tobias Geerinckx-Rice a5dee1ac3a
gnu: emacs-seq: Update to 2.19. 
* gnu/packages/emacs.scm (emacs-seq): Update to 2.19.
 2017-01-24 23:58:35 +01:00
Tobias Geerinckx-Rice cd4d96b808
gnu: emacs-spinner: Update to 1.7.3. 
* gnu/packages/emacs.scm (emacs-spinner): Update to 1.7.3.
 2017-01-24 23:57:53 +01:00
Tobias Geerinckx-Rice 6b7f909f1e
gnu: emacs-auctex: Update to 11.90.0. 
* gnu/packages/emacs.scm (emacs-auctex): Update to 11.90.0.
 2017-01-24 23:27:08 +01:00
Tobias Geerinckx-Rice 3388438538
gnu: trash-cli: Update to 0.17.1.14. 
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.14.
 2017-01-24 23:27:07 +01:00
Tobias Geerinckx-Rice e80aaeb4ad
gnu: python2-pysqlite: Update to 2.8.3. 
* gnu/packages/python.scm (python2-pysqlite): Update to 2.8.3.
 2017-01-24 23:27:07 +01:00
Tobias Geerinckx-Rice 49d5e338d6
gnu: python-cov-core: Fix & improve synopsis & description. 
* gnu/packages/python.scm (python-cov-core)[synopsis]: Capitalise and add
‘coverage’ key-word.
[description]: Use @code.
 2017-01-24 23:27:07 +01:00
Tobias Geerinckx-Rice b165c215e1
gnu: python-email-validator: Update to 1.0.2. 
* gnu/packages/python.scm (python-email-validator): Update to 1.0.2.
 2017-01-24 23:27:06 +01:00
Tobias Geerinckx-Rice 08b813366e
gnu: python-mistune: Update to 0.7.3. 
* gnu/packages/python.scm (python-mistune): Update to 0.7.3.
 2017-01-24 23:27:06 +01:00
Tobias Geerinckx-Rice e6ace98d10
gnu: python-tabulate: Update to 0.7.7. 
* gnu/packages/python.scm (python-tabulate): Update to 0.7.7
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice ba1731dac5
gnu: python-paste: Update to 2.0.3. 
* gnu/packages/python.scm (python-paste): Update to 2.0.3.
[arguments]: Re-enable tests.  They now pass even on Python 3.
[properties]: Remove.
(python2-paste): Use package-with-python2 directly now.
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice 46e110cca5
gnu: python-colorama: Fix typo in synopsis. 
* gnu/packages/python.scm (python-colorama)[synopsis]: Capitalise.
 2017-01-24 23:27:05 +01:00
Tobias Geerinckx-Rice f92576f963
gnu: python-colorama: Update to 0.3.7. 
* gnu/packages/python.scm (python-colorama): Update to 0.3.7.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice 02d7f33705
gnu: python-debian: Update to 0.1.28. 
* gnu/packages/python.scm (python-debian): Update to 0.1.28.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice ccc1876210
gnu: python-seaborn: Update to 0.7.1. 
* gnu/packages/python.scm (python-seaborn): Update to 0.7.1.
 2017-01-24 23:27:04 +01:00
Tobias Geerinckx-Rice 5754fe9570
gnu: python-unidecode: Update to 0.04.20. 
* gnu/packages/python.scm (python-unidecode): Update to 0.04.20.
 2017-01-24 23:27:03 +01:00
Tobias Geerinckx-Rice 4418990d77
gnu: python-alembic: Update to 0.8.10. 
* gnu/packages/python.scm (python-alembic): Update to 0.8.10.
 2017-01-24 23:27:03 +01:00
Tobias Geerinckx-Rice 9e2802cb8d
gnu: python-orderedmultidict: Update to 0.7.11. 
* gnu/packages/python.scm (python-orderedmultidict): Update to 0.7.11.
 2017-01-24 23:27:03 +01:00
Tobias Geerinckx-Rice 6acff0f900
gnu: the-silver-searcher: Fix & improve description. 
* gnu/packages/code.scm (the-silver-searcher)[description]: Fix typo, use
@command and @file mark-up, and clarify a bit.
 2017-01-24 23:27:02 +01:00
Tobias Geerinckx-Rice 392f326655
gnu: the-silver-searcher: Update to 1.0.2. 
* gnu/packages/code.scm (the-silver-searcher): Update to 1.0.2.
[source]: Use signed tarball from home-page.  Remove file-name.
[native-inputs]: Remove autoconf, automake, and libtool, as well as...
[arguments]: ...the ‘autoconf’ phase since we're now building a release.
 2017-01-24 23:27:02 +01:00
Tobias Geerinckx-Rice db963aad3d
gnu: youtube-dl: Update to 2017.01.24. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.24.
 2017-01-24 23:27:02 +01:00