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30382 Commits

Author SHA1 Message Date
Ludovic Courtès 301a424906
gnu: sed: Update to 4.5. 
* gnu/packages/base.scm (sed): Update to 4.5.
[arguments]: Remove 'patch-test-suite' phase.
[native-inputs]: New field.
 2018-04-01 18:41:28 +02:00
Ludovic Courtès d32922759b
gexp: 'compiled-modules' prints a line for each module. 
* guix/gexp.scm (compiled-modules)[build]: Add 'processed' parameter to
'process-entry' and 'process-directory'.  Print a message before each
'compile-file' call.
 2018-04-01 12:36:03 +02:00
Ludovic Courtès e640c9e6f3
gexp: compiled-modules: Factorize build code. 
* guix/gexp.scm (compiled-modules)[build]: Factorize 'process-entry'.
 2018-04-01 12:36:02 +02:00
Ludovic Courtès 6422bde9b4
gnu: glibc: Reinstate fallback code for systems lacking 'prlimit64'. 
* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file.
* gnu/packages/base.scm (glibc/linux)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-04-01 12:36:02 +02:00
Arun Isaac 6009cdb4e3
gnu: python-pycairo: Update to 1.16.3. 
* gnu/packages/gtk.scm (python-pycairo): Update to 1.16.3.
[source]: Remove patch.
[build-system]: Switch to python-build-system.
[native-inputs]: Remove python-waf.
[home-page]: Use HTTPS URI.
* gnu/packages/patches/pycairo-wscript.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.
 2018-03-31 00:29:35 +05:30
Arun Isaac 7ad5c6dd78
gnu: python-pytest: Update to 3.5.0. 
* gnu/packages/python.scm (python-six): Replace system* with invoke.
(python-six-bootstrap, python2-six-bootstrap, python2-funcsigs-bootstrap): New
variables.
(python-more-itertools)[propagated-inputs]: Replace python-six with
python-six-bootstrap.
* gnu/packages/check.scm (python-pytest): Update to 3.5.0.
[propagated-inputs]: Add python-attrs-bootstrap,
python-more-itertools-bootstrap, python-pluggy and python-six-bootstrap.
[properties]: Add python2-variant.
(python2-pytest)[propagated-inputs]: Add python2-funcsigs.
(python-pytest-bootstrap)[properties]: Add python2-variant.
(python2-pytest-bootstrap)[propagated-inputs]: Add python2-funcsigs-bootstrap.
 2018-03-31 00:29:35 +05:30
Arun Isaac 32b92480b3
gnu: python-py: Update to 1.5.3. 
* gnu/packages/python.scm (python-py): Update to 1.5.3.
[home-page]: Update URI.
 2018-03-31 00:29:35 +05:30
Arun Isaac b19a960f5f
gnu: python-hypothesis: Update to 3.52.0. 
* gnu/packages/check.scm (python-hypothesis): Update to 3.52.0.
[propagated-inputs]: Add python-attrs and python-coverage.
[home-page]: Update URI.
* gnu/packages/python.scm (python-attrs-bootstrap, python2-attrs-bootstrap):
New variables.
 2018-03-31 00:29:35 +05:30
Arun Isaac 180b6f3baa
gnu: Add python-more-itertools. 
* gnu/packages/python.scm (python-more-itertools, python2-more-itertools): New
variables.
 2018-03-31 00:29:35 +05:30
Arun Isaac 21f76d40cc
gnu: python-pluggy: Update to 0.6.0. 
* gnu/packages/python.scm (python-pluggy): Update to 0.6.0.
 2018-03-31 00:29:35 +05:30
Arun Isaac 769f56d735
gnu: python-pyasn1: Update to 0.4.2. 
* gnu/packages/python.scm (python-pyasn1): Update to 0.4.2.
 2018-03-31 00:29:34 +05:30
Arun Isaac fbec83b81a
gnu: python-attrs: Update to 17.4.0. 
* gnu/packages/python.scm (python-attrs): Update to 17.4.0.
 2018-03-31 00:29:34 +05:30
Leo Famulari 9b018ada13
gnu: tzdata: Update to 2018d. 
* gnu/packages/base.scm (tzdata): Update to 2018d.
 2018-03-29 20:15:49 -04:00
Ludovic Courtès d0a2db47fb
ld-wrapper: Allow linking with non-store libraries by default. 
This was suggested on several occasions, notably
<https://bugs.gnu.org/24544>.

* gnu/packages/ld-wrapper.in (%allow-impurities?): Default to #t and
parse the value of 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
* guix/build/gnu-build-system.scm (set-paths): Set
'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'.
 2018-03-29 17:58:16 +02:00
Ludovic Courtès 1a5e07c3b5
ld-wrapper: Don't talk about "impure library". 
* gnu/packages/ld-wrapper.in (rpath-arguments): Clarify message instead
of saying "impure library".
 2018-03-29 17:58:16 +02:00
Ludovic Courtès 6764538327
ld-wrapper: Make sure debugging output goes through. 
* gnu/packages/ld-wrapper.in (ld-wrapper): Add call to 'force-output'.
 2018-03-29 17:58:16 +02:00
Ludovic Courtès c90fd42020
gremlin: Fix typo in export list. 
* guix/build/gremlin.scm: Really export 'elf-dynamic-info-soname'.
 2018-03-29 17:58:15 +02:00
Ludovic Courtès 5294836d6a
gnu: libarchive: Add '-L' flags in 'libarchive.pc'. 
* gnu/packages/backup.scm (libarchive)[arguments]: Add
'add--L-in-libarchive-pc' phase.
 2018-03-29 17:58:15 +02:00
Marius Bakke 5576cfabf3
Merge branch 'master' into core-updates 2018-03-29 17:34:41 +02:00
Marius Bakke 12cb6c31df
gnu: cmake: Update to 3.11.0. 
* gnu/packages/cmake.scm (cmake): Update to 3.11.0.
[arguments]: Enable fixed test.  Adjust file substitutions.  Run tests and
"./configure" in parallel.
(cmake-3.11): Remove variable.
* gnu/packages/storage.scm (ceph)[arguments]: Remove #:cmake.
 2018-03-29 16:54:52 +02:00
Roel Janssen e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
 2018-03-29 15:50:44 +02:00
Roel Janssen 53e42694e5
gnu: kaiju: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
 2018-03-29 15:40:52 +02:00
Vasile Dumitrascu d232e02ecf
gnu: Add duperemove. 
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-29 15:17:35 +02:00
Ludovic Courtès 9c3f2c2e83
gnu: Add python-debug. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
 2018-03-29 15:17:35 +02:00
Efraim Flashner 594e5d7368
gnu: nano: Update to 2.9.5. 
* gnu/packages/nano.scm (nano): Update to 2.9.5.
 2018-03-29 16:08:06 +03:00
Marius Bakke 1abc295b9b
gnu: libgpg-error: Update to 1.28. 
* gnu/packages/gnupg.scm (libgpg-error): Update to 1.28.
 2018-03-29 14:28:26 +02:00
Roel Janssen c974008d91
gnu: Add r-idr. 
* gnu/packages/cran.scm (r-idr): New variable.
 2018-03-29 14:26:44 +02:00
Roel Janssen 996bed0608
gnu: Add r-amap. 
* gnu/packages/cran.scm (r-amap): New variable.
 2018-03-29 14:11:21 +02:00
Roel Janssen 6174db2b2c
gnu: Add r-venndiagram. 
* gnu/packages/cran.scm (r-venndiagram): New variable.
 2018-03-29 14:08:36 +02:00
Roel Janssen ddbf2a98ba
gnu: Add r-pastecs. 
* gnu/packages/cran.scm (r-pastecs): New variable.
 2018-03-29 13:54:30 +02:00
Ricardo Wurmus 017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22. 
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
 2018-03-29 12:26:38 +02:00
Ricardo Wurmus b0a4b6d957
gnu: libusb-for-axoloti: Update patch. 
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
 2018-03-29 12:26:38 +02:00
Chris Marusich 7874e9e047
gnu: Refactor boot-service-type and activation-service-type. 
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
 2018-03-29 08:38:49 +02:00
Chris Marusich 881c61d062
doc: Improve <service-type> documentation. 
* doc/guix.texi (Service Reference): Correct and clarify some statements
  regarding the "compose" and "extend" procedures of <service-type>.
 2018-03-29 07:29:49 +02:00
Chris Marusich 3cd4447f56
guix-install.sh: Explicitly set root's home directory. 
* etc/guix-install.sh (ROOT_HOME): New variable.
  (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms):
  Use ROOT_HOME instead of ~root or the HOME environment variable.
* doc/guix.texi (Binary Installation): Instead of assuming that ~ and
  $HOME refer to root's directory simply because commands are being run
  as root, explicilty refer to it via ~root.

Fixes: <https://bugs.gnu.org/30728>
 2018-03-29 07:03:37 +02:00
Marius Bakke 61565a5f4a
gnu: tcl, tk: Update to 8.6.8. 
* gnu/packages/tcl.scm (tcl, tk): Update to 8.6.8.
 2018-03-29 02:56:23 +02:00
Marius Bakke ce35dc84a1
gnu: python: Update to 3.6.5. 
* gnu/packages/python.scm (python-3.6): Update to 3.6.5.
 2018-03-29 02:56:00 +02:00
Marius Bakke 7a08150429
gnu: icu4c: Update to 61.1. 
* gnu/packages/icu4c.scm (icu4c): Update to 61.1.
 2018-03-29 02:54:09 +02:00
Marius Bakke ab0bdd5456
gnu: util-linux: Update to 2.32. 
* gnu/packages/patches/util-linux-tests.patch: Adjust context.
* gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (util-linux): Update to 2.32.
[source](patches): Remove 'util-linux-CVE-2018-7738.patch'.
 2018-03-29 02:43:06 +02:00
Jelle Licht ce353a548f
gnu: node: Update to 9.10.0. 
* gnu/packages/node.scm (node): Update to 9.10.0.
 2018-03-28 23:33:53 +02:00
Jelle Licht b63af9b7c7
gnu: http-parser: Update to 2.8.0. 
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
 2018-03-28 23:33:43 +02:00
Marius Bakke 0a8985f395
gnu: xf86-video-ati: Update to 18.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
 2018-03-28 21:23:21 +02:00
Marius Bakke 4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
 2018-03-28 21:23:21 +02:00
Leo Famulari 935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes]. 
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
 2018-03-28 14:59:47 -04:00
Leo Famulari 590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
 2018-03-28 14:07:45 -04:00
Konrad Hinsen 1cde746700
gnu: Add r-parsedate. 
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:18:20 +02:00
Maxim Cournoyer 3481c714c6
gnu: mu: Fix tests failures triggered by DST. 
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:14:40 +02:00
Nadya Voronova 910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Ludovic Courtès c5e7bca248
build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON. 
* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm
to the HAVE_GUILE_JSON-guarded block.
 2018-03-28 17:06:33 +02:00
Ludovic Courtès 183445a6ed
weather: Report continuous integration stats. 
* guix/scripts/weather.scm (histogram, throughput, queued-subset): New
procedures.
(report-server-coverage): Report CI information.
* doc/guix.texi (Invoking guix weather): Document it.
 2018-03-28 16:17:06 +02:00