Commit Graph

9839 Commits

Author SHA1 Message Date
Leo Famulari a1537ac2ba
gnu: gd: Fix CVE-2016-{5766,6128,6132,6214}.
* gnu/packages/patches/gd-CVE-2016-5766.patch,
gnu/packages/patches/gd-CVE-2016-6128.patch,
gnu/packages/patches/gd-CVE-2016-6132.patch,
gnu/packages/patches/gd-CVE-2016-6214.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gd.scm (gd): Use patches.
2016-07-16 12:49:22 -04:00
Leo Famulari b9174ff449
gnu: gd: Update to 2.2.2 [fixes CVE-2016-{5767,6161}].
* gnu/packages/gd.scm (gd): Update to 2.2.2.
2016-07-16 12:49:21 -04:00
Leo Famulari e31f05d435
gnu: pidgin: Update to 2.11.0 [security fixes].
Fixes CVE-2016-{2365,2366,2367,2368,2369,2370,2371,2372,2373,2374,2375,2376,
2377,2378,2379,2380,4323}.

* gnu/packages/messaging.scm (pidgin): Update to 2.11.0.
2016-07-16 11:54:20 -04:00
Ricardo Wurmus 12356eb8b0
gnu: geda-gaf: Update to 1.9.2.
* gnu/packages/engineering.scm (geda-gaf): Update to 1.9.2.
2016-07-16 17:19:26 +02:00
Ricardo Wurmus 2352c97df4
gnu: geda-gaf: Use modify-phases syntax.
* gnu/packages/engineering.scm (geda-gaf)[arguments]: Use modify-phases
  syntax.
2016-07-16 17:19:22 +02:00
Tobias Geerinckx-Rice fb8a5d633a
gnu: Add encfs.
* gnu/packages/crypto.scm (rlog, encfs): New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-16 14:41:39 +02:00
Ludovic Courtès b9bb50c608
services: dbus: Synchronize startup using dbus-daemon's PID file.
* gnu/services/dbus.scm (dbus-shepherd-service): Pass #:pid-file to
'make-forkexec-constructor'.
2016-07-16 14:41:39 +02:00
Andreas Enge ee6a5d0e3e
gnu: lm-sensors: Add alternate source URL.
* gnu/packages/linux.scm (lm-sensors)[source]: Add URL.
2016-07-15 19:18:36 +02:00
Leo Famulari 2d74d94b17 gnu: borg: Update to 1.0.6.
* gnu/packages/backup.scm (borg): Update to 1.0.6.
[source]: Use pypi-uri.
2016-07-15 12:20:29 -04:00
David Craven 71b0601a97
services: Add 'dropbear-service'.
* gnu/services/ssh.scm (<dropbear-configuration>): New record type.
(dropbear-activation, dropbear-shepherd-service, dropbear-service): New
procedures.
(dropbear-service-type): New variable.
* doc/guix.texi (Networking Services): Document it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-07-15 17:57:28 +02:00
David Craven 2102ae2e30
gnu: lsh: Move to (gnu packages ssh)
* gnu/packages/lsh.scm: Remove.  Move 'lsh and liboop' to...
* gnu/packages/ssh.scm (liboop, lsh): ... here.  New variables.
* gnu/services/ssh.scm, gnu/services/base.scm: Adjust accordingly.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-15 17:57:28 +02:00
Leo Famulari e538a245f3
gnu: diffoscope: Update to 54.
* gnu/packages/package-management.scm (diffoscope): Update to 54.
2016-07-15 11:40:02 -04:00
Tobias Geerinckx-Rice 7fb18f578a
gnu: Import (guix licenses) with #:prefix.
* gnu/packages/crypto.scm: Add 'license:' #:prefix for (guix licenses).

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-07-15 14:31:37 +02:00
Andreas Enge e05647add7
Update e-mail address for Tobias Geerinckx-Rice.
* .mailmap: Add Tobias Geerinckx-Rice.
* gnu/packages/disk.scm: Replace "tobias.geerinckx.rice@gmail.com" with
"me@tobias.gr".
* gnu/packages/linux.scm: Likewise.
* gnu/packages/networking.scm: Likewise.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2016-07-15 14:29:22 +02:00
Andreas Enge f0fbf2c11c
install: Add mdadm to the image.
* gnu/system/install.scm (installation-os)[packages]: Add mdadm.
2016-07-15 10:41:14 +02:00
Alex Vong 9ce2a95c30
gnu: racket: Update to 6.5.
* gnu/packages/scheme.scm (racket): Update to 6.5.

Signed-off-by: Andreas Enge <andreas@enge.fr>
2016-07-15 10:31:02 +02:00
Leo Famulari f0344d9369
gnu: git: Update to 2.9.1.
* gnu/packages/version-control.scm (git): Update to 2.9.1.
(git-manpages)[source]: Update hash.
2016-07-14 16:58:55 -04:00
Ricardo Wurmus 6619f9c769
gnu: Add eigensoft.
* gnu/packages/bioinformatics.scm (eigensoft): New variable.
2016-07-14 08:58:35 +02:00
Efraim Flashner 42d6d0d0d6
gnu: python-setuptools-scm: Update to 1.11.1.
* gnu/packages/python.scm (python-setuptools-scm): Update to 1.11.1.
2016-07-14 05:51:03 +03:00
Ludovic Courtès 2d94702ff4
system: Change the shell of 'nobody' to 'nologin'.
Fixes <http://bugs.gnu.org/23971>.
Reported by Vincent Legoll <vincent.legoll@gmail.com>.

* gnu/system/shadow.scm (%base-user-accounts): Add 'shell' field.  Set
'home-directory' to "/nonexistent".
2016-07-13 23:42:35 +02:00
Jan Nieuwenhuizen 4c7260011e
gnu: grub: Update to 2.02~beta3.
* gnu/packages/grub.scm (grub): Update to 2.02~beta3.
[arguments]: Modify tests/grub_func_test.in in 'patch-stuff' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-13 23:26:04 +02:00
Ludovic Courtès 66f8f5f9c3
gnu: screen: Remove unneeded configure flags.
* gnu/packages/screen.scm (screen)[arguments]: Remove --infodir and
--mandir, which are no longer needed.
2016-07-13 23:26:04 +02:00
George Clemmer a7e7981c7d
gnu: screen: Support 256 colors.
* gnu/packages/screen.scm (screen)[arguments]: Pass --enable-colors256.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-13 23:26:04 +02:00
Mark H Weaver 7a7d6b2bde
gnu: linux-libre: Update to 4.6.4.
* gnu/packages/linux.scm (linux-libre): Update to 4.6.4.
2016-07-12 22:09:08 -04:00
Mark H Weaver 8f1488c639
gnu: linux-libre-4.4: Update to 4.4.15.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.15.
2016-07-12 22:08:58 -04:00
Jan Nieuwenhuizen abba1d087e
gnu: Add gptfdisk.
* gnu/packages/disk.scm (gptfdisk): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-13 00:32:21 +02:00
Leo Famulari 91f9f33a19
Revert "gnu: Add python-imagesize."
This reverts commit d8fa9cf7f4.
2016-07-12 18:21:25 -04:00
Leo Famulari ced40bd7b5
Revert "gnu: Add python-alabaster."
This reverts commit 15c36240f0b9ab3e8dc0b57702bb6a5174e4ad58.
2016-07-12 18:21:24 -04:00
Leo Famulari ce09c02c4c
Revert "gnu: Add python-snowballstemmer."
This reverts commit b3283dbaf395e024b6d88e63dbb0ccff42209f28.
2016-07-12 18:21:24 -04:00
Leo Famulari 1a27944905
Revert "gnu: python-sphinx: Update to 1.4.4."
This reverts commit efb386ca5c07c5a4571de8561fd5dcd2a4d9cec7.
2016-07-12 18:21:24 -04:00
Leo Famulari bfd77809ec
Revert "gnu: python-sphinx-rtd-theme: Update to 0.1.9."
This reverts commit e1257225e7bb211e3dd8d9373fb5a81fe83b6baf.
2016-07-12 18:21:23 -04:00
Ludovic Courtès bdff55eac3
gnu: emacs-flycheck: Add missing dependency on emacs-seq.
Fixes a regression introduced in
afb6fdaa5d.

* gnu/packages/emacs.scm (flycheck)[propagated-inputs]: Add EMACS-SEQ.
2016-07-12 22:47:08 +02:00
Ludovic Courtès c1629416d8
gnu: Remove unneeded 'imported-modules' fields for 'origin'.
* gnu/packages/engineering.scm (fastcap)[source](modules,
imported-modules): Remove.
* gnu/packages/wm.scm (awesome)[source](imported-modules): Remove.
* tests/packages.scm ("package-source-derivation, snippet"): Remove
'imported-modules' field.
2016-07-12 22:47:08 +02:00
Ludovic Courtès a91c3fc727
services: <shepherd-service> no longer has an 'imported-modules' field.
* gnu/services/shepherd.scm (<shepherd-service>)[imported-modules]:
Remove.
(%default-imported-modules): Make private.
(shepherd-service-file): Use 'with-imported-modules'.
(shepherd-configuration-file): Remove 'modules' and the calls to
'imported-modules' and 'compiled-modules'.  Use
'with-imported-modules' instead.
* doc/guix.texi (Shepherd Services): Adjust accordingly.
* gnu/services/base.scm (file-system-shepherd-service): Use
'with-imported-modules'.  Remove 'imported-modules' field.
* gnu/system/mapped-devices.scm (device-mapping-service-type): Remove
'imported-modules'.
(open-luks-device): Use 'with-imported-modules'.
* gnu/tests.scm (marionette-shepherd-service): Remove 'imported-modules'
field and use 'with-imported-modules'.
2016-07-12 22:47:08 +02:00
Ludovic Courtès fd12989398
gnu: Use 'gexp->file' in conjunction with 'with-imported-modules'.
* gnu/services.scm (activation-script): Remove code to set '%load-path'
and use 'with-imported-modules' instead.
(cleanup-gexp): Likewise.
* gnu/system/vm.scm (%vm-module-closure): New variable.
(expression->derivation-in-linux-vm): Remove #:modules.
[loader]: Remove code to set '%load-path'.
[builder]: Use %VM-MODULE-CLOSURE.
(qemu-image): Use 'with-imported-modules'.
2016-07-12 22:47:08 +02:00
Ludovic Courtès 2b4185792d
gexp: 'gexp->file' emits code to set '%load-path'.
* guix/gexp.scm (gexp->file): Add #:set-load-path? parameter and honor it.
* gnu/system.scm (operating-system-parameters-file): Pass
  #:set-load-path? #f.
* doc/guix.texi (G-Expressions): Adjust accordingly.
2016-07-12 22:47:08 +02:00
Ludovic Courtès 43dcce8674
linux-container: Fix list of imported modules.
This fixes a regression introduced in
958dd3ce68.

* gnu/system/linux-container.scm (container-script)[script]: Add (guix
combinators) to the list of imported modules.
2016-07-12 22:47:08 +02:00
Ludovic Courtès 4ee96a7912
gnu: Switch to 'with-imported-modules'.
* gnu/services.scm (directory-union): Use 'with-imported-modules'
instead of the '#:modules' argument of 'computed-file'.
* gnu/services/base.scm (udev-rules-union): Likewise.
* gnu/services/dbus.scm (system-service-directory): Likewise.
* gnu/services/desktop.scm (wrapped-dbus-service):
(polkit-directory): Likewise.
* gnu/services/networking.scm (tor-configuration->torrc): Likewise.
* gnu/services/xorg.scm (xorg-configuration-directory): Likewise.
* gnu/system/install.scm (self-contained-tarball): Likewise.
* gnu/system/linux-container.scm (container-script): Likewise.
* gnu/system/linux-initrd.scm (expression->initrd): Likewise, and
remove #:modules parameter.
(flat-linux-module-directory): Use 'with-imported-modules'.
(base-initrd): Likewise.
* gnu/system/locale.scm (locale-directory): Likewise.
* gnu/system/shadow.scm (default-skeletons): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
* gnu/tests/base.scm (run-basic-test): Likewise.
* gnu/tests/install.scm (run-install): Likewise.
* doc/guix.texi (Initial RAM Disk): Update 'expression->initrd'
documentation.
2016-07-12 22:47:08 +02:00
Efraim Flashner 08858812b5
gnu: obs: Remove compiler flags for non-Intel hardware.
* gnu/packages/video.scm (obs)[arguments]: If compiling for arm or mips
devices then don't add Intel specific compiler flags.
2016-07-12 18:14:22 +03:00
Ricardo Wurmus 17dc32a400
gnu: Add Ribotaper.
* gnu/packages/bioinformatics.scm (ribotaper): New variable.
2016-07-12 12:19:39 +02:00
Ricardo Wurmus 9a8f309cf1
gnu: Add bedtools-2.18.
* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
2016-07-12 12:19:15 +02:00
Efraim Flashner 34c553b07e
gnu: xscreensaver: Update to 5.35.
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.35.
2016-07-12 10:34:43 +03:00
Efraim Flashner 46cd684e2c
gnu: sxhkd: Update to 0.5.6.
* gnu/packages/xdisorg.scm (sxhkd): Update to 0.5.6.
2016-07-12 09:59:10 +03:00
Efraim Flashner 1f1e620f88
gnu: mtdev: Update to 1.1.5.
* gnu/packages/xdisorg.scm (mtdev): Update to 1.1.5.
2016-07-12 09:45:07 +03:00
Efraim Flashner af2b0b1507
gnu: libxkbcommon: Update to 0.6.1.
* gnu/packages/xdisorg.scm (libxkbcommon): Update to 0.6.1.
2016-07-12 09:34:24 +03:00
Efraim Flashner 16d8f9beb5
gnu: arandr: Update to 0.1.9.
* gnu/packages/xdisorg.scm (arandr): Update to 0.1.9.
2016-07-12 09:29:57 +03:00
Leo Famulari 6dc4d4655e
gnu: mpd: Update to 0.19.17.
* gnu/packages/mpd.scm (mpd): Update to 0.19.17.
2016-07-12 01:54:47 -04:00
Ben Woodcroft 51d8039b4a
gnu: parallel: Update to 20160622.
* gnu/packages/parallel.scm (parallel): Update to 20160622.
2016-07-12 14:47:50 +10:00
Efraim Flashner 5edf2f0561
gnu: grue-hunter: Adapt to gzip-1.8 update.
* gnu/packages/games.scm (grue-hunter)[arguments]: Change gunzip call to
gzip call, add `-d' to the gzip command.
2016-07-11 16:52:41 +03:00
Efraim Flashner 38e9373b0d
gnu: glibc-2.21: Fix substitutes in glibc-2.21.
* gnu/packages/base.scm (glibc-2.21)[arguments]: Add back substitution
for /bin/pwd which was removed in the update of glibc to 2.23.
2016-07-11 16:52:40 +03:00
Efraim Flashner 4277313883
gnu: exim: Adjust to pcre output split.
* gnu/packages/mail.scm (exim)[native-inputs]: Add pcre:bin.
[inputs]: Remove pcre.
2016-07-11 16:52:36 +03:00
Matthew Jordan cdd8e0776e
gnu: Add Tmux Themepack.
* gnu/packages/tmux.scm (tmux-themepack): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-10 15:18:17 -04:00
Efraim Flashner 8ac012d0ca
gnu: help2man: Update to 1.47.4.
* gnu/packages/man.scm (help2man): Update to 1.47.4.
2016-07-10 21:34:37 +03:00
Efraim Flashner c635ff8369
gnu: man-pages: Update to 4.0.6.
* gnu/packages/man.scm (man-pages): Update to 4.0.6.
2016-07-10 21:34:37 +03:00
Efraim Flashner dfce38993e
gnu: man-db: Update to 2.7.5.
* gnu/packages/man.scm (man-db): Update to 2.7.5.
2016-07-10 21:34:37 +03:00
Efraim Flashner cf1dc4b7e6
gnu: obs: Update to 0.15.1.
* gnu/packages/video.scm (obs): Update to 0.15.1.
2016-07-10 21:34:37 +03:00
Efraim Flashner 5e3f68e67c
gnu: libbluray: Update to 0.9.3.
* gnu/packages/video.scm (libbluray): Update to 0.9.3.
2016-07-10 21:34:37 +03:00
Ricardo Wurmus 0e6ee10c07
gnu: libmtp: Update to 1.1.11.
* gnu/packages/patches/libmtp-devices.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu/packages/libusb.scm (libmtp): Update to 1.1.11.
2016-07-10 18:02:04 +02:00
Ben Woodcroft 7f575d3e56
gnu: diamond: Update to 0.8.12.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.12.
2016-07-10 22:32:57 +10:00
Alex Griffin 0e74bb5bd6
gnu: Add gnome-mpv.
* gnu/packages/video.scm (gnome-mpv): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-10 07:11:08 +03:00
Alex Griffin 6cf83e3f83
gnu: mpv: Enable shared library support.
* gnu/packages/video.scm (mpv): Enable shared library support.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-10 07:10:55 +03:00
Efraim Flashner 9d5448f35f
gnu: ccache: Update to 3.2.5.
* gnu/packages/ccache.scm (ccache): Update to 3.2.5.
[native-inputs]: Add which.
2016-07-10 06:48:27 +03:00
Efraim Flashner e9fd10a83b
gnu: ldb: Update to 1.1.26.
* gnu/packages/samba.scm (ldb): Update to 1.1.26.
2016-07-10 06:48:27 +03:00
Efraim Flashner ea26457dad
gnu: tevent: Update to 0.9.28.
* gnu/packages/samba.scm (tevent): Update to 0.9.28.
2016-07-10 06:48:27 +03:00
Efraim Flashner 67e7452dda
gnu: talloc: Update to 2.1.7.
* gnu/packages/samba.scm (talloc): Update to 2.1.7.
2016-07-10 06:48:27 +03:00
Efraim Flashner 8b21d22d6a
gnu: samba: Update to 4.3.11 [fixes CVE-2016-2119].
* gnu/packages/samba.scm (samba): Update to 4.3.11.
2016-07-10 06:48:27 +03:00
Leo Famulari 1a6d3d2df7
gnu: dropbear: Update to 2016.73.
* gnu/packages/ssh.scm (dropbear): Update to 2016.73.
2016-07-09 19:38:36 -04:00
Danny Milosavljevic a502dfbf4c
gnu: Add python-jedi.
* gnu/packages/python.scm (python-jedi, python2-jedi): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-09 14:12:14 -04:00
宋文武 8b5ed303dd
gnu: conky: Update to 1.10.3.
* gnu/packages/conky.scm (conky): Update to 1.10.3.
[arguments]: Add #:configure-flags.
[inputs]: Add libxinerama.
2016-07-09 20:50:38 +08:00
Ben Woodcroft ec2a67de88
gnu: Add python-dendropy.
* gnu/packages/bioinformatics.scm (python-dendropy, python2-dendropy): New
variables.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-07-09 08:00:34 +10:00
Ben Woodcroft c11f79a49e
gnu: star: Restrict supported systems to 64-bit systems.
* gnu/packages/bioinformatics.scm (star)[supported-systems]: Restrict to
x86_64-linux and mips64el-linux.
2016-07-08 22:10:05 +10:00
Leo Famulari 71ca053928
gnu: rxvt-unicode: Update to 9.22.
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.22.
2016-07-07 20:46:29 -04:00
ng0 6c12abbdb2
services: nginx: Fix typo.
* gnu/services/web.scm (nginx-service): Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-07 20:42:58 -04:00
John J. Foerch 614023981a
gnu: Add di.
* gnu/packages/admin.scm (di): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-07 20:38:49 -04:00
Efraim Flashner 1a5fd02a82
gnu: getmail: Update to 4.49.0.
* gnu/packages/mail.scm (getmail): Update to 4.49.0.
2016-07-07 20:02:11 +03:00
Efraim Flashner a0b15f5eef
gnu: python-pyusb: Update to 1.0.0.
* gnu/packages/libusb.scm (python-pyusb): Update to 1.0.0.
2016-07-07 19:59:25 +03:00
Efraim Flashner 6b810897a0
gnu: python-websocket-client: Update to 0.37.0.
* gnu/packages/python.scm (python-websocket-client): Update to 0.37.0.
[source]: Use pypi uri format.
2016-07-07 19:44:11 +03:00
Efraim Flashner 697e86ddca
gnu: ansible: Update to 2.1.0.0.
* gnu/packages/admin.scm (ansible): Update to 2.1.0.0.
[source]: Use pypi format.
2016-07-07 18:59:28 +03:00
Efraim Flashner 88535a4453
gnu: python-psutil: Update to 4.3.0.
* gnu/packages/python.scm (python-psutil): Update to 4.3.0.
[home-page]: Update home-page.
2016-07-07 17:38:20 +03:00
Ben Woodcroft d285657eae
gnu: bedtools: Update to 2.26.0.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.26.0.
2016-07-07 23:27:19 +10:00
Ben Woodcroft 7c7643a7f0
gnu: diamond: Update to 0.8.11.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.11.
2016-07-07 18:21:10 +08:00
Efraim Flashner 0b166a7559
gnu: quassel: Build with modular qt.
* gnu/packages/irc.scm (quassel)[inputs]: Remove qt, add qtbase,
qttools, qtscript.
[arguments]: Disable webkit.
2016-07-07 12:23:39 +03:00
Efraim Flashner 5f2074ca66
gnu: snorenotify: Build with modular qt.
* gnu/packages/kde.scm (snorenotify)[inputs]: Remove qt, add qtbase, qttools.
2016-07-07 12:23:39 +03:00
Efraim Flashner 05b9c00e59
gnu: qca: Build with qtbase.
* gnu/packages/kde.scm (qca)[inputs]: Remove qt, add qtbase.
2016-07-07 12:23:39 +03:00
Efraim Flashner 4742c4decc
gnu: Add qtscript.
* gnu/packages/qt.scm (qtscript): New variable.
2016-07-07 12:23:39 +03:00
Ricardo Wurmus 66cf0f054d
gnu: Add r-domc.
* gnu/packages/statistics.scm (r-domc): New variable.
2016-07-07 10:46:39 +02:00
Ricardo Wurmus 9003957e53
gnu: Add r-multitaper.
* gnu/packages/statistics.scm (r-multitaper): New variable.
2016-07-07 10:46:30 +02:00
Ricardo Wurmus 274da826f9
gnu: Add r-seqinr.
* gnu/packages/bioinformatics.scm (r-seqinr): New variable.
2016-07-07 10:46:17 +02:00
Ricardo Wurmus fdd0f7b2a3
gnu: Add r-ade4.
* gnu/packages/statistics.scm (r-ade4): New variable.
2016-07-07 10:46:05 +02:00
Efraim Flashner 939cf41c3f
gnu: python-oslosphinx: Update to 4.3.0.
* gnu/packages/openstack.scm (python-oslosphinx): Update to 4.3.0.
2016-07-07 06:54:06 +03:00
Efraim Flashner 8157af2e09
gnu: khmer: Limit to x86_64 systems only.
* gnu/packages/bioinformatics.scm (khmer)[supported-systems]: New field.
2016-07-07 06:33:28 +03:00
Leo Famulari 25a814ceab
gnu: httpd: Update to 2.4.23.
Fixes CVE-2016-4979.

* gnu/packages/web.scm (httpd): Update to 2.4.23.
2016-07-06 14:37:46 -04:00
Efraim Flashner 15ca556bbc
gnu: pumpa: Remove extra input.
* gnu/packages/pumpio.scm (pumpa)[inputs]: Remove qjson.
2016-07-06 21:22:36 +03:00
Roel Janssen 8f82641ac9
gnu: Add emacs-hl-todo.
* gnu/packages/emacs.scm (emacs-hl-todo): New variable.
2016-07-06 19:02:13 +02:00
Federico Beffa 2d634d9b7e gnu: texlive: Fix 'texmf-local' search path.
* gnu/packages/tex.scm (texlive, texlive-minimal): Add
  'native-search-paths'.
  (texlive-texmf): Correct 'TEXMFLOCAL' definition in 'texmf.cnf' in
  'texmf-config' phase.
2016-07-06 18:23:03 +02:00
Roel Janssen 41184943ae
gnu: Add emacs-ess.
* gnu/packages/emacs.scm (emacs-ess): New variable.
2016-07-06 13:25:50 +02:00
Ricardo Wurmus 26112c0abb
gnu: python-numexpr: Update to 2.6.0.
* gnu/packages/python.scm (python-numexpr): Update to 2.6.0.
2016-07-06 12:02:18 +02:00
Ben Woodcroft 975cd29a98
gnu: r-ggplot2: Add r-svglite to propagated-inputs.
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
2016-07-06 15:17:29 +08:00
Ben Woodcroft 3aebedcc02
gnu: Add r-svglite.
* gnu/packages/statistics.scm (r-svglite): New variable.
2016-07-06 15:17:29 +08:00
Ben Woodcroft c5940b157e
gnu: Add r-gdtools.
* gnu/packages/statistics.scm (r-gdtools): New variable.
2016-07-06 15:17:29 +08:00
Efraim Flashner 6baa83d283
gnu: sudo: Update to 1.8.17p1.
* gnu/packages/admin.scm (sudo): Update to 1.8.17p1.
[source]: Remove patch.
* gnu/packages/patches/sudo-CVE-2015-5602.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-07-06 07:28:09 +03:00
Efraim Flashner fda746b198
gnu: menu-cache: Update to 1.0.1.
* gnu/packages/lxde.scm (menu-cache): Update to 1.0.1.
2016-07-05 22:36:13 +03:00
Efraim Flashner d78c952dfd
gnu: lxtask: Update to 0.1.7.
* gnu/packages/lxde.scm (lxtask): Update to 0.1.7.
2016-07-05 22:33:20 +03:00
Efraim Flashner d7ec759a7a
gnu: lxrandr: Update to 0.3.1.
* gnu/packages/lxde.scm (lxrandr): Update to 0.3.1.
2016-07-05 22:30:38 +03:00
Efraim Flashner 2c2a9ef79e
gnu: lxappearance: Update to 0.6.2.
* gnu/packages/lxde.scm (lxappearance): Update to 0.6.2.
2016-07-05 22:27:11 +03:00
Ricardo Wurmus 5fb5dffbd4
gnu: Add multiqc.
* gnu/packages/bioinformatics.scm (multiqc): New variable.
2016-07-05 16:32:37 +02:00
Roel Janssen 091963c69b
gnu: Add perltidy.
* gnu/packages/perl.scm (perltidy): New variable.
2016-07-05 16:12:23 +02:00
Ricardo Wurmus 1f1b20b8be
gnu: Add bits.
* gnu/packages/bioinformatics.scm (bits): New variable.
2016-07-05 15:43:36 +02:00
Manolis Ragkousis 9a745d76f6
gnu: cross-gcc-arguments: Disable libitm, libvtv and libsanitizer.
* gnu/packages/cross-base.scm (cross-gcc-arguments)[arguments]: Add
  "--disable-libitm", "--disable-libvtv" and "--disable-libsanitizer"
  when libc is not present.
2016-07-05 14:55:21 +03:00
Ricardo Wurmus 66e40e0065
gnu: Add EMBOSS.
* gnu/packages/bioinformatics.scm (emboss): New variable.
2016-07-05 12:32:12 +02:00
Ricardo Wurmus aae8ba4746
gnu: Add libharu.
* gnu/packages/pdf.scm (libharu): New variable.
2016-07-05 12:26:38 +02:00
Alex Sassmannshausen 5082eac957
gnu: Add perl-list-someutils.
* gnu/packages/perl.scm (perl-list-someutils): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:35 +02:00
Alex Sassmannshausen 8bcafb7440
gnu: Add perl-list-compare.
* gnu/packages/perl.scm (perl-list-compare): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:22 +02:00
Alex Sassmannshausen 056575421e
gnu: Add perl-io-captureoutput.
* gnu/packages/perl.scm (perl-io-captureoutput): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:12:04 +02:00
David Craven b58cbf9ac5
services: Add rngd-service.
* gnu/services/base.scm (<rngd-configuration>): New record type.
(rngd-service-type): New variable.
(rngd-service): New procedure.
* doc/guix.texi (Base Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-05 11:10:01 +02:00
Ricardo Wurmus cf91cfc0c4
gnu: testdisk: Update to 7.0.
* gnu/packages/admin.scm (testdisk): Update to 7.0.
2016-07-05 08:54:47 +02:00
Ricardo Wurmus d6a08ec0c6
gnu: testdisk: Add NTFS support.
* gnu/packages/admin.scm (testdisk)[inputs]: Add ntfs-3g.
2016-07-05 08:54:39 +02:00
Efraim Flashner 0adc21c293
gnu: Add python2-pytest-cache.
* gnu/packages/python.scm (python2-pytest-cache): New variable.
(python-pytest-cache)[properties]: New field.
2016-07-04 22:47:15 +03:00
Roel Janssen fa8af53e99
gnu: Add scrollkeeper.
* gnu/packages/documentation.scm (scrollkeeper): New variable.
2016-07-04 21:32:31 +02:00
ng0 42c4b24646
gnu: python2-pythondialog: Update to 3.4.0.
* gnu/packages/python.scm (python2-pythondialog): Update to 3.4.0.
[source]: Use pypi-uri.

Co-authored-by: Leo Famulari <leo@famulari.name>
2016-07-04 14:35:24 -04:00
Kei Kebreau 35e2e49577
gnu: Add chromium-bsu.
* gnu/packages/games.scm (chromium-bsu): New variable.
2016-07-04 11:36:38 -04:00
Roel Janssen 744004a31f
gnu: Add r-edger.
* gnu/packages/bioinformatics.scm (r-edger): New variable.
2016-07-04 14:49:07 +02:00
Roel Janssen 7d4224d794
gnu: Add r-limma.
* gnu/packages/bioinformatics.scm (r-limma):  New variable.
2016-07-04 14:39:16 +02:00
Roel Janssen 7034791aa2
gnu: Add emacs-eprime.
* gnu/packages/emacs.scm (emacs-eprime): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
2016-07-04 10:14:18 +03:00
Alex Kost e446182e38
gnu: guix: Add emacs-magit-popup to propagated-inputs.
* gnu/packages/package-management.scm (guix-0.10.0): Add
'emacs-magit-popup' to make it possible to use "M-x guix" command.
2016-07-04 10:14:18 +03:00
Alex Kost c1562e3de1
gnu: Add emacs-magit-popup.
* gnu/packages/emacs.scm (emacs-magit-popup): New variable.
2016-07-04 10:14:18 +03:00
ng0 7012e2c716
gnurl: Update to 7.48.0.
* gnu/packages/gnunet.scm (gnurl): Update to 7.48.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-04 10:01:12 +03:00
Leo Famulari 9852994842
gnu: python-sphinx-rtd-theme: Update to 0.1.9.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-sphinx-rtd-theme):
Update to 0.1.9.
2016-07-03 22:24:45 -04:00
Leo Famulari 5ebd95202c
gnu: python-sphinx: Update to 1.4.4.
* gnu/packages/python.scm (python-sphinx, python2-sphinx): Update to 1.4.4.
[source]: Use pypi-uri.
[inputs]: Add python-alabaster, python-babel, python-imagesize, python-six.
[propagated-inputs]: New field.
2016-07-03 22:24:45 -04:00
Leo Famulari 936984b421
gnu: Add python-snowballstemmer.
* gnu/packages/python.scm (python-snowballstemmer, python2-snowballstemmer): New
variables.
2016-07-03 22:24:44 -04:00
Leo Famulari afcb871954
gnu: Add python-alabaster.
* gnu/packages/python.scm (python-alabaster, python2-alabaster): New variables.
2016-07-03 22:24:44 -04:00
Leo Famulari d8fa9cf7f4
gnu: Add python-imagesize.
* gnu/packages/python.scm (python-imagesize, python2-imagesize): New variables.
2016-07-03 22:24:44 -04:00
ng0 679b535b03
Update name for ng0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-03 23:48:32 +02:00
David Craven 9b0942c1b0
gnu: Add rng-tools.
* gnu/packages/linux.scm (rng-tools): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 17:29:12 -04:00
David Craven 75750abbbc
gnu: Order module imports in (gnu packages linux) alphabetically.
* gnu/packages/linux.scm: Order module imports alphabetically.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 17:29:12 -04:00
Troy Sankey a2cb16b0c6
gnu: Add alot.
* gnu/packages/mail.scm (alot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 16:52:19 -04:00
Troy Sankey 47d0b29269
gnu: Add python-urwidtrees.
* gnu/packages/python.scm (python-urwidtrees, python2-urwidtrees):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-07-03 16:52:19 -04:00
Efraim Flashner b58c1b2d9b
gnu: sshfs-fuse: Update to 2.8.
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.8.
2016-07-03 22:09:21 +03:00
Leo Famulari df32099104
gnu: font-gnu-unifont: Update to 9.0.01.
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 9.0.01.
2016-07-03 14:16:48 -04:00
John J Foerch 3fa3151f8c
gnu: conkeror: Update to 1.0.3
* gnu/packages/conkeror.scm (conkeror): Update to 1.0.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-07-03 20:30:08 +03:00
Ricardo Wurmus 2bb006121e
gnu: Add Amsynth.
* gnu/packages/music.scm (amsynth): New variable.
2016-07-03 19:02:49 +02:00
Ricardo Wurmus 1095bd1db0
gnu: Add emacs-emms-player-mpv.
* gnu/packages/emacs.scm (emacs-emms-player-mpv): New variable.
2016-07-03 18:31:39 +02:00
Ricardo Wurmus d06d4d7b2a
gnu: emms: Rename package to "emacs-emms".
* gnu/packages/emacs.scm (emms): Rename to "emacs-emms".
2016-07-03 18:31:39 +02:00
Efraim Flashner 0c9df45755
gnu: smalltalk: Don't use bundled libraries.
* gnu/packages/smalltalk.scm (smalltalk)[native-inputs]: Add libffi,
libltdl, libsigsegv, pkg-config.
[home-page]: Update to new home-page.
2016-07-03 14:56:37 +03:00
Efraim Flashner 569d9efe3a
gnu: cgit: Update to 1.0.
* gnu/packages/version-control.scm (cgit): Update to 1.0.
2016-07-03 14:15:08 +03:00
Efraim Flashner 94d8726bfb
gnu: mercurial: Update to 3.8.4.
* gnu/packages/version-control.scm (mercurial): Update to 3.8.4.
2016-07-03 14:08:26 +03:00
Efraim Flashner 4dc9dcc272
gnu: exiv2: Update to 0.25.
* gnu/packages/geeqie.scm (exiv2): Update to 0.25.
[native-inputs]: Add intltool.
2016-07-03 12:55:02 +03:00
Efraim Flashner da6383b3ea
gnu: geeqie: Update to 1.3.
* gnu/packages/geeqie.scm (geeqie): Update to 1.3.
[arguments]: Add autogen phase.
[native-inputs]: Add autoconf, automake, glib.
2016-07-03 12:32:50 +03:00
Efraim Flashner dbd6bc5cc6
gnu: ninja: Update to 1.7.1.
* gnu/packages/ninja.scm (ninja): Update to 1.7.1.
* gnu/packages/patches/ninja-tests.patch: Update patch.
2016-07-03 12:00:25 +03:00
Efraim Flashner fa6a082ea8
gnu: emacs-helm: Update to 1.9.8.
* gnu/packages/emacs.scm (emacs-helm): Update to 1.9.8.
2016-07-03 11:15:15 +03:00
Efraim Flashner 54055e9ff9
gnu: emacs-slime: Update to 2.18.
* gnu/packages/emacs.scm (emacs-slime): Update to 2.18.
2016-07-03 11:12:43 +03:00
Efraim Flashner afb6fdaa5d
gnu: flycheck: Update to 28.
* gnu/packages/emacs.scm (flycheck): Update to 28.
2016-07-03 11:10:28 +03:00
Efraim Flashner 49f54a7454
gnu: openspecfun: Update to 0.5.2.
* gnu/packages/maths.scm (openspecfun): Update to 0.5.2.
2016-07-03 10:14:16 +03:00
Efraim Flashner 26f6e565a9
gnu: openlibm: Update to 0.5.1.
* gnu/packages/maths.scm (openlibm): Update to 0.5.1.
2016-07-03 10:07:17 +03:00
Efraim Flashner d7d7f99c48
gnu: librecad: Update to 2.1.1.
* gnu/packages/engineering.scm (librecad): Update to 2.1.1.
2016-07-03 09:56:45 +03:00
Efraim Flashner 0562a81eae
gnu: pugixml: Update to 1.7.
* gnu/packages/xml.scm (pugixml): Update to 1.7.
2016-07-03 08:28:51 +03:00
Efraim Flashner c17489124e
gnu: libetpan: Update to 1.7.2.
* gnu/packages/mail.scm (libetpan): Update to 1.7.2.
[inputs]: Add zlib.
2016-07-03 07:21:56 +03:00
Efraim Flashner 6a628e8ba7
gnu: openimageio: Update to 1.6.15.
* gnu/packages/graphics.scm (openimageio): Update to 1.6.15.
[source]: Remove patch.
* gnu/packages/patches/openimageio-boost-1.60.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-07-03 06:44:49 +03:00
Efraim Flashner 0a7fc756fe
gnu: cgal: Update to 4.8.1.
* gnu/packages/graphics.scm (cgal): Update to 4.8.1.
[source]: Release tarballs now at Github.
2016-07-03 03:28:03 +03:00
Efraim Flashner fbb060fec8
gnu: ffmpeg-2.8: Update to 2.8.7.
* gnu/packages/video.scm (ffmpeg): Update to 2.8.7.
2016-07-03 00:40:24 +03:00
Efraim Flashner cb764dc838
gnu: xorriso: Update to 1.4.4.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.4.
[home-page]: Use https.
2016-07-03 00:39:21 +03:00
Efraim Flashner 8ffa5a5798
gnu: ffmpeg: Update to 3.1.1.
* gnu/packages/video.scm (ffmpeg): Update to 3.1.1.
2016-07-02 23:14:06 +03:00
Efraim Flashner c5795adf61
gnu: enlightenment: Update to 0.21.0.
* gnu/packages/enlightenment.scm (enlightenment): Update to 0.21.0.
2016-07-02 22:15:32 +03:00
Alex Sassmannshausen abf18075ca
gnu: Add perl-ipc-system-simple.
* gnu/packages/perl.scm (perl-ipc-system-simple): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 2dca669e45
gnu: Add perl-guard.
* gnu/packages/perl.scm (perl-guard): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 7640c62dd2
gnu: Add perl-file-zglob.
* gnu/packages/perl.scm (perl-file-zglob): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d209710bd4
gnu: Add perl-config-ini.
* gnu/packages/perl.scm (perl-config-ini): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 4ca06e4c87
gnu: Add perl-mixin-linewise.
* gnu/packages/perl.scm (perl-mixin-linewise): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen 77ff12c987
gnu: Add perl-perlio-utf8-strict.
* gnu/packages/perl.scm (perl-perlio-utf8_strict): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen a65d0fdb7c
gnu: Add perl-test-class-most.
* gnu/packages/perl.scm (perl-test-class-most): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen d2d6cd67c2
gnu: Add perl-test-class.
* gnu/packages/perl.scm (perl-test-class): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Alex Sassmannshausen e957060ccb
gnu: perl-text-diff: Update perl-text-diff.
* gnu/packages/perl.scm (perl-text-diff): Correct URL, update to 1.44.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
John J. Foerch 6d3ef286b1
gnu: Add midicsv.
* gnu/packages/music.scm (midicsv): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-07-02 16:24:35 +02:00
Leo Famulari 9996ab16e6
gnu: gimp: Fix CVE-2016-4994.
* gnu/packages/patches/gimp-CVE-2016-4994.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gimp.scm (gimp): Use it.
2016-07-02 10:13:55 -04:00
Ludovic Courtès a4bbf41b25
tests: install: Adjust to new 'marionette-service-type' interface.
This is a followup to 037f9e07cd.
Reported by Mark H Weaver.

* gnu/tests/install.scm (%minimal-os): Pass a <marionette-configuration>
object as the value for the MARIONETTE-SERVICE-TYPE.
2016-07-02 14:59:30 +02:00
宋文武 2d02a7789a
gnu: mozjs-24: Disable parallel build.
* gnu/packages/gnuzilla.scm (mozjs-24)[arguments]: Add
'#:parallel-build? #f'.
2016-07-02 10:43:45 +08:00
Leo Famulari 328ae34112
gnu: python-sphinx-repoze-autointerface: Update to 0.8.
* gnu/packages/python.scm (python-sphinx-repoze-autointerface,
python2-sphinx-repoze-autointerface): Update to 0.8.
2016-07-01 20:55:53 -04:00
Leo Famulari 07abcc2e73
gnu: imagemagick: Update to 6.9.5-0.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-0.
2016-07-01 20:27:09 -04:00
Leo Famulari 9c509ca9a6
gnu: python-cryptography, python-cryptography-vectors: Update to 1.3.4.
* gnu/packages/python.scm (python-cryptography, python2-cryptography):
Update to 1.3.4.
[source]: Use pypi-uri.
(python-cryptography-vectors, python2-cryptography-vectors): Update to 1.3.4.
[source]: Use pypi-uri.
2016-07-01 20:23:07 -04:00
Leo Famulari 187e9094f7
Revert "gnu: wrap-python3: Create more symlinks."
This reverts commit 478e75b53b.
2016-07-01 17:03:36 -04:00
Efraim Flashner d5da7ee418
gnu: rofi: Update to 1.1.0.
* gnu/packages/xdisorg.scm (rofi): Update to 1.1.0.
2016-07-01 17:30:16 +03:00
Efraim Flashner 5bf834225a
gnu: libreoffice: Update to 5.1.4.2 [fixes CVE-2016-4324].
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.4.2.
[native-inputs]: Switch python to python-wrapper.
[arguments]: Add '--without-doxygen' and '--disable-gtk3'.
2016-07-01 15:53:08 +03:00
Efraim Flashner 2638ec61e0
gnu: orcus: Update to 0.9.2.
* gnu/packages/libreoffice.scm (orcus): Update to 0.9.2.
2016-07-01 15:51:32 +03:00
Ben Woodcroft 71830f0e49
gnu: vsearch: Update to 2.0.1.
*  gnu/packages/bioinformatics.scm (vsearch): Update to 2.0.1.
2016-07-01 09:01:28 +10:00
Ben Woodcroft c7f04517a6
gnu: Add r-glmnet.
* gnu/packages/statistics.scm (r-glmnet): New variable.
2016-07-01 09:01:20 +10:00
Efraim Flashner 84d08af653
gnu: busybox: Use 'modify-phases'.
* gnu/packages/busybox.scm (busybox)[arguments]: Use 'modify-phases'.
2016-06-30 19:11:45 +03:00
Efraim Flashner 2e5505e5ea
gnu: busybox: Update to 1.25.0.
* gnu/packages/busybox.scm (busybox): Update to 1.25.0.
[native-inputs]: Add which.
2016-06-30 19:11:27 +03:00
Ludovic Courtès d2375c4330
gnu: mit-krb5: Disable tests on all 32-bit platforms.
* gnu/packages/mit-krb5.scm (mit-krb5)[arguments]: Change #:tests? to
true only on x86_64-linux.
2016-06-30 10:47:24 +02:00
Efraim Flashner 5fc4df0cb5
gnu: owncloud-client: Remove some bundled libs.
* gnu/packages/owncloud.scm (owncloud-client)[source]: Add a snippet
removing some of the 3rd party projects.
2016-06-30 10:56:57 +03:00
Efraim Flashner 9b1c1ea129
gnu: owncloud-client: Update to 2.2.2.
* gnu/packages/owncloud.scm (owncloud-client): Update to 2.2.2.
2016-06-30 09:55:18 +03:00
Danny Milosavljevic f4155188c3
gnu: Add python-prompt-toolkit.
* gnu/packages/python.scm (python-prompt-toolkit, python2-prompt-toolkit):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-06-29 22:31:05 -04:00
Leo Famulari e4875826d8
gnu: python-wcwidth: Add missing 'properties' field.
This is a followup to commit a44fd439dc.

* gnu/packages/python.scm (python-wcwidth)[properties]: New field.
2016-06-29 22:25:44 -04:00
Ludovic Courtès 468e0b18d1
gnu: ceres-solver: Propagate GLOG.
* gnu/packages/maths.scm (ceres)[inputs]: Move GLOG to...
[propagated-inputs]: ... here.  New field.
2016-06-29 16:08:46 +02:00
Jan Nieuwenhuizen ad85791265
gnu: linux-initrd: Support NVMe devices.
* gnu/system/linux-initrd.scm (base-initrd): Add nvme to linux-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-06-29 16:08:46 +02:00
Ben Woodcroft 8dec2229a2
gnu: blast+: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (blast+): Update to 2.4.0.
2016-06-29 22:42:47 +10:00
Ludovic Courtès bc3a2e3503
gnu: ceres-solver: Depend on glog.
* gnu/packages/maths.scm (ceres)[arguments]: Remove -DMINIGLOG=ON.
[inputs]: Add GLOG.
2016-06-29 12:01:05 +02:00
Ludovic Courtès 53d159f843
gnu: Add glog.
* gnu/packages/logging.scm (glog): New variable.
2016-06-29 11:13:03 +02:00
Ludovic Courtès 2de091f0c8
gnu: node: Make sure 'npm' remains a symlink after 'patch-shebangs'.
Fixes <http://bugs.gnu.org/23744>.
Reported by Jovany Leandro G.C <bit4bit@riseup.net>
and Jelle Licht <jlicht@fsfe.org>.

* gnu/packages/node.scm (node)[arguments]: Replace 'patch-shebangs'
phase.
2016-06-29 10:06:18 +02:00
Ludovic Courtès c2c36f5fab
gnu: openexr: Install 'ImfStdIO.h'.
* gnu/packages/graphics.scm (openexr)[source](snippet): Modify
IlmImf/Makefile.in so that it installs 'ImfStdIO.h'.
2016-06-29 10:06:18 +02:00
Ricardo Wurmus b0069a6777
gnu: avrdude: Use libusb-compat.
* gnu/packages/patches/avrdude-fix-libusb.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/flashing-tools.scm (avrdude)[source]: Remove patch.
[inputs]: Replace "libusb" with "libusb-compat".
2016-06-29 07:15:33 +02:00
Ben Woodcroft 3bce0f14b2
gnu: star: Update to 2.5.2a.
* gnu/packages/bioinformatics.scm (star): Update to 2.5.2a.
2016-06-29 10:14:22 +10:00
Ben Woodcroft 6c737963f6
gnu: htslib: Update to 1.3.1.
* gnu/packages/bioinformatics.scm (htslib): Update to 1.3.1.
2016-06-29 10:14:22 +10:00
Ricardo Wurmus ec9466388e
gnu: Add SEEK.
* gnu/packages/bioinformatics.scm (seek): New variable.
2016-06-28 22:49:05 +02:00
Ludovic Courtès d9ecec9b87
gnu: mit-krb5: Disable tests on i686.
* gnu/packages/mit-krb5.scm (mit-krb5)[arguments]: Add #:tests?.
2016-06-28 14:21:09 +02:00
Ben Woodcroft d6e374a0d9
gnu: mafft: Update to 7.299.
* gnu/packages/bioinformatics.scm (mafft): Update to 7.299.
2016-06-28 21:42:15 +10:00
Efraim Flashner 48d4ce6ea3
Revert "gnu: qtbase: Don't propagate mesa."
This reverts commit 763a8e6e23.
2016-06-28 14:33:37 +03:00
Ben Woodcroft 45469ebe52
gnu: metabat: Update to 0.26.3.
* gnu/packages/bioinformatics.scm (metabat): Update to 0.26.3.
[arguments]: Update include and linking paths accordingly.
2016-06-28 21:28:06 +10:00
Ben Woodcroft af45244e36
gnu: diamond: Update to 0.8.9.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.9.
2016-06-28 19:31:25 +10:00
Ricardo Wurmus 05e9f30f1e
gnu: r: Add pango to inputs.
* gnu/packages/statistics.scm (r)[inputs]: Remove cairo, add pango.
2016-06-28 09:36:00 +02:00
Ricardo Wurmus de1b319dbf
gnu: pulseaudio: Enable support for Bluetooth.
* gnu/packages/pulseaudio.scm (pulseaudio)[arguments]: Add
"--enable-bluez5" to configure flags.
[inputs]: Add "bluez" and "sbc".
2016-06-28 08:35:39 +02:00
Ludovic Courtès d2fa61bc35
tests: Add Avahi and NSS-mDNS test.
* gnu/tests/base.scm (%avahi-os): New variable.
(run-nss-mdns-test): New procedure.
(%test-nss-mdns): New variable.
2016-06-27 21:41:38 +02:00
Ludovic Courtès c8695f325d
services: avahi: Add #:debug? parameter.
* gnu/services/avahi.scm (<avahi-configuration>)[debug?]: New field.
(avahi-shepherd-service): Honor it.
(avahi-service): Add #:debug? and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
2016-06-27 21:41:38 +02:00
Ludovic Courtès 194ccecf77
services: avahi: Pass --daemonize and check for the PID file.
This makes sure the service's 'start' finishes when avahi-daemon is
ready to process requests.

* gnu/services/avahi.scm (avahi-shepherd-service): Use --daemonize
instead of --syslog and add #:pid-file.
2016-06-27 21:41:38 +02:00
Ludovic Courtès 037f9e07cd
tests: 'marionette-service-type' nows takes a <marionette-configuration>.
* gnu/tests.scm (<marionette-configuration>): New record type.
(marionette-shepherd-service): Argument now is a <marionette-configuration>.
(marionette-operating-system): Adjust accordingly.  Add #:requirements
parameter and honor it.
2016-06-27 21:41:38 +02:00
Ludovic Courtès 858d372c98
tests: base: Add host name resolution tests.
* gnu/tests/base.scm (run-basic-test)["host name resolution",
"host not found"]: New tests.
2016-06-27 21:41:38 +02:00
Ludovic Courtès 9009538d84
services: Export more service types.
* gnu/services/base.scm (syslog-service-type): Export.
(urandom-seed-service-type): Export.
2016-06-27 21:41:38 +02:00
Ludovic Courtès 04101d99ee
services: nscd: Wait for the PID file.
* gnu/services/base.scm (nscd-shepherd-service): Pass #:pid-file.
2016-06-27 21:41:38 +02:00
Kei Kebreau aea7d1d516
gnu: Add orage.
* gnu/packages/xfce.scm (orage): New variable.
2016-06-27 12:58:06 -04:00
宋文武 06961617a1
gnu: python2-orator: Rearrange inputs.
* gnu/packages/python.scm (python2-orator)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 b26760302a
gnu: python-orator: Rearrange inputs.
* gnu/packages/python.scm (python-orator)[native-inputs]: Move
python-arrow, python-blinker, python-cleo, python-fake-factory,
python-inflection, python-lazy-object-proxy, python-pyaml,
python-simplejson, python-wrapt ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 24c9aa1810
gnu: python2-fake-factory: Rearrange inputs.
* gnu/packages/python.scm (python2-fake-factory)[native-inputs]: Move
python2-ipaddress ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 bbcd729791
gnu: python-fake-factory: Rearrange inputs.
* gnu/packages/python.scm (python-fake-factory)[native-inputs]: Move
python-dateutil-2, python-six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 d42560bdfa
gnu: python-email-validator: Rearrange inputs.
* gnu/packages/python.scm (python-email-validator)[native-inputs]: Move
python-dnspython, python-idna ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 9403150a96
gnu: python-cleo: Rearrange inputs.
* gnu/packages/python.scm (python-cleo)[native-inputs]: Move
python-psutil, python-pylev ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 36aed73648
gnu: python-arrow: Rearrange inputs.
* gnu/packages/python.scm (python-arrow)[native-inputs]: Move
python-dateutil-2 ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 c8fa3d9b73
gnu: python-pykafka: Rearrange inputs.
* gnu/packages/python.scm (python-pykafka)[native-inputs]: Move
python-gevent, python-kazoo, python-tabulate ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 c18899e8cf
gnu: python-kazoo: Rearrange inputs.
* gnu/packages/python.scm (python-kazoo)[native-inputs]: Move
six ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
宋文武 4591217058
gnu: python-twisted: Rearrange inputs.
* gnu/packages/python.scm (python-twisted)[native-inputs]: Move
python-zope-interface ...
[propagated-inputs]: to here.
2016-06-27 22:17:21 +08:00
Matthew Jordan 7a2941a83e
gnu: Add Go 1.4.
* gnu/local.mk: Modified file.
* gnu/packages/golang.scm: New file.

Co-authored-by: Efraim Flashner <efraim@flashner.co.il>
Co-authored-by: Andy Wingo <wingo@igalia.com>
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-06-27 14:09:10 +02:00
Ben Woodcroft 94ff31572d
gnu: Add khmer.
* gnu/packages/bioinformatics.scm (khmer): New variable.
* gnu/packages/patches/khmer-use-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-06-27 21:35:16 +10:00
Ben Woodcroft 9ded145717
gnu: Add python-screed.
* gnu/packages/bioinformatics.scm (python-screed, python2-screed):
New variables.
2016-06-27 21:16:39 +10:00
Ludovic Courtès 8601feaea6
gnu: git: Fix builds with Make 4.2.
* gnu/packages/version-control.scm (git)[arguments]: Add 'add-PM.stamp'
phase.
2016-06-27 09:50:56 +02:00
Ludovic Courtès 98378db6ba
gnu: git: Use 'modify-phases'.
* gnu/packages/version-control.scm (git)[arguments]: Use
'modify-phases'.
2016-06-27 09:42:06 +02:00
Ludovic Courtès 01497dfe6c
Merge branch 'master' into core-updates 2016-06-27 09:30:01 +02:00
Efraim Flashner 095b7fea44
gnu: qttools: Update to 5.6.1-1.
* gnu/packages/qt.scm (qttools): Update to 5.6.1-1.
2016-06-27 05:25:32 +03:00
Efraim Flashner 677b98ae68
gnu: qtlocation: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtlocation): Update to 5.6.1-1.
2016-06-27 05:25:30 +03:00
Efraim Flashner a2a256562f
gnu: qtwebchannel: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwebchannel): Update to 5.6.1-1.
2016-06-27 05:25:27 +03:00
Efraim Flashner 33741e16f4
gnu: qtserialport: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtserialport): Update to 5.6.1-1.
[inputs]: Add eudev.
2016-06-27 05:25:10 +03:00
Efraim Flashner 66f26a35f1
gnu: qtwayland: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwayland): Update to 5.6.1-1.
2016-06-27 05:25:05 +03:00
Efraim Flashner 99f6f56f4f
gnu: qtmultimedia: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtmultimedia): Update to 5.6.1-1.
2016-06-27 05:25:02 +03:00
Efraim Flashner 2743daffab
gnu: qtsensors: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtsensors): Update to 5.6.1-1.
2016-06-27 05:25:00 +03:00
Efraim Flashner fb767debee
gnu: qtwebsockets: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtwebsockets): Update to 5.6.1-1.
2016-06-27 05:24:58 +03:00
Efraim Flashner 4254b206b4
gnu: qtconnectivity: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtconnectivity): Update to 5.6.1-1.
2016-06-27 05:24:56 +03:00
Efraim Flashner f3a3210cfd
gnu: qtdeclarative: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtdeclarative): Update to 5.6.1-1.
2016-06-27 05:24:53 +03:00
Efraim Flashner d547a1970d
gnu: qtxmlpatterns: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtxmlpatterns): Update to 5.6.1-1.
2016-06-27 05:24:51 +03:00
Efraim Flashner 0835e22816
gnu: qtx11extras: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtx11extras): Update to 5.6.1-1.
2016-06-27 05:24:49 +03:00
Efraim Flashner 1c16029b7f
gnu: qtimageformats: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtimageformats): Update to 5.6.1-1.
2016-06-27 05:24:46 +03:00
Efraim Flashner 7de7d8a639
gnu: qtsvg: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtsvg): Update to 5.6.1-1.
2016-06-27 05:24:44 +03:00
Efraim Flashner c7386f4e0c
gnu: qtbase: Update to 5.6.1-1.
* gnu/packages/qt.scm (qtbase): Update to 5.6.1-1.
2016-06-27 05:24:42 +03:00
Efraim Flashner f66970a7ed
gnu: qtbase: Add eudev and libinput support.
* gnu/packages/qt.scm (qtbase)[inputs]: Add eudev, libinput.
2016-06-27 05:24:40 +03:00