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13058 Commits

Author SHA1 Message Date
John Darrington 0eefac0f2f
gnu: xfig: Use modify-phases. 
* gnu/packages/xfig.scm (xfig): Use modify-phases.
 2017-01-12 17:41:00 +01:00
John Darrington 5aae77e44b
gnu: xfd: Remove wrapper. 
* gnu/packages/xorg.scm (xfd): Remove wrapper.
 2017-01-12 17:40:55 +01:00
John Darrington 73ae4e69a1
gnu: editres: Use %app-defaults-dir. 
* gnu/packages/xorg.scm (editres): Replace string literal with
%app-defaults-dir.
 2017-01-12 17:40:47 +01:00
John Darrington 5dc8dd07b0
gnu: xfontsel: Simplify definition. 
* gnu/packages/xorg.scm (%app-defaults-dir): New variable.
(xfontsel): Remove wrapper.
 2017-01-12 17:40:35 +01:00
Danny Milosavljevic 35c99a1fa0
gnu: ghc-semigroups: Update to 0.18.2. 
* gnu/packages/haskell.scm (ghc-semigroups): Update to 0.18.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-12 16:49:47 +01:00
Danny Milosavljevic 9076281529
gnu: Add ghc-wave. 
* gnu/packages/haskell.scm (ghc-wave): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-12 16:49:47 +01:00
Danny Milosavljevic ff26453601
gnu: ghc-quickcheck: Update to 2.8.2. 
* gnu/packages/haskell.scm (ghc-quickcheck): Update to 2.8.2.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-12 16:49:47 +01:00
Roel Janssen ac1f1e4e02
gnu: Add r-ggthemes. 
* gnu/packages/statistics.scm (r-ggthemes):  New variable.
 2017-01-12 15:14:04 +01:00
Ludovic Courtès a91740655c
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to eefd042.
 2017-01-12 10:13:35 +01:00
Ludovic Courtès e5d861f305
gnu: eudev: Add 'eudev-with-hwdb' variant that contains 'hwdb.bin'. 
* gnu/packages/linux.scm (eudev-with-hwdb): New variable.
(usbutils)[inputs]: Use it instead of EUDEV.
 2017-01-12 10:13:35 +01:00
Roel Janssen c5173d74d6
gnu: Add r-txdb-mmusculus-ucsc-mm10-knowngene. 
* gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): New variable.
 2017-01-12 10:02:57 +01:00
Leo Famulari eefd042e60
gnu: bind: Update to 9.10.4-P5 [fixes CVE-2016-{9131,9147,9444}]. 
* gnu/packages/dns.scm (bind): Update to 9.10.4-P5.
 2017-01-11 18:13:39 -05:00
Leo Famulari 639168dde2
gnu: isc-dhcp: Update bundled bind to 9.9.9-P5 [security fixes]. 
Fixes CVE-2016-{9131,9147,9444}.

* gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.9-P5.
 2017-01-11 18:13:39 -05:00
Ludovic Courtès 5c3d6c1da8
gnu: fprintd: Provide the right file name for 'fprintd.conf'. 
* gnu/packages/freedesktop.scm (fprintd)[arguments]: New field.
 2017-01-11 23:01:54 +01:00
Ludovic Courtès aaa2581b61
gnu: abiword: Remove timestamps from libabiword. 
* gnu/packages/abiword.scm (abiword)[source](modules, snippet): New
fields.
 2017-01-11 23:01:54 +01:00
Ludovic Courtès 89b99531c2
gnu: abiword: Allow GTK+ schemas to be found. 
Fixes <http://bugs.gnu.org/25037>.
Reported by Adonay Felipe Nogueira <adfeno@openmailbox.org>.

* gnu/packages/abiword.scm (abiword)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
 2017-01-11 23:01:54 +01:00
Danny Milosavljevic 8d67610bdc
gnu: Add python2-cheetah 
* gnu/packages/python.scm (python2-cheetah): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-11 13:09:21 -05:00
Mark H Weaver 57203ebba0
gnu: gnome-session: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-session): Update to 3.22.2.
 2017-01-11 11:35:11 -05:00
Mark H Weaver 2e45916c43
gnu: gnome-shell-extensions: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-shell-extensions): Update to 3.22.2.
 2017-01-11 11:35:09 -05:00
Mark H Weaver 759a077cca
gnu: gnome-shell: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-shell): Update to 3.22.2.
 2017-01-11 11:35:07 -05:00
Mark H Weaver fc119619c1
gnu: gjs: Update to 1.46.0. 
* gnu/packages/gnome.scm (gjs): Update to 1.46.0.
[arguments]: Start Xvfb in 'pre-check' phase.
 2017-01-11 11:35:05 -05:00
Mark H Weaver 7a6cd578e3
gnu: gnome-control-center: Update to 3.22.1. 
* gnu/packages/gnome.scm (gnome-control-center): Update to 3.22.1.
 2017-01-11 11:35:03 -05:00
Mark H Weaver e1f3c790d6
gnu: gnome-settings-daemon: Update to 3.22.1. 
* gnu/packages/gnome.scm (gnome-settings-daemon): Update to 3.22.1.
 2017-01-11 11:35:01 -05:00
Mark H Weaver 4edc6a9c7e
gnu: gdm: Update to 3.22.1. 
* gnu/packages/gnome.scm (gdm): Update to 3.22.1.
 2017-01-11 11:35:00 -05:00
Mark H Weaver 11bffbfab6
gnu: network-manager: Update to 1.4.4. 
* gnu/packages/gnome.scm (network-manager): Update to 1.4.4.
 2017-01-11 11:34:57 -05:00
Mark H Weaver 09d8890569
gnu: nautilus: Update to 3.22.2. 
* gnu/packages/gnome.scm (nautilus): Update to 3.22.2.
[arguments]: Remove "--disable-tracker" from configure flags.
[inputs]: Add gnome-autoar, nettle, and tracker.
 2017-01-11 11:34:55 -05:00
Mark H Weaver b64e217f0d
gnu: Add tracker. 
* gnu/packages/gnome.scm (tracker): New variable.
 2017-01-11 11:34:54 -05:00
Mark H Weaver dc69fe187b
gnu: Add gnome-autoar. 
* gnu/packages/gnome.scm (gnome-autoar): New variable.
 2017-01-11 11:34:52 -05:00
Mark H Weaver a88d5a0c25
gnu: mutter: Update to 3.22.2. 
* gnu/packages/gnome.scm (mutter): Update to 3.22.2.  Add comment
noting that forked versions of 'cogl' and 'clutter' are now bundled
with mutter.
[arguments]: Add "--disable-wayland" to configure flags.  Add TODO comments
reminding us to add support for wayland and the native backend.  Add configure
flags from 'cogl' and 'clutter'.
[propagated-inputs]: Remove clutter.  Add new inputs needed by
mutter-{clutter,cogl}-1.0.pc.
[inputs]: Add libgudev and libxrandr.  Move libxkbcommon to propagated-inputs.
Remove mesa-headers, replaced by mesa in propagated-inputs.
(cogl, clutter): Add comments to note that changes to cogl and clutter may
also be needed in mutter.
 2017-01-11 11:34:50 -05:00
Mark H Weaver ee0f4e78b0
gnu: zenity: Update to 3.22.0. 
* gnu/packages/gnome.scm (zenity): Update to 3.22.0.
 2017-01-11 11:34:48 -05:00
Mark H Weaver c88e669a44
gnu: aisleriot: Update to 3.22.1. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.1.
 2017-01-11 11:34:46 -05:00
Mark H Weaver d56bea89ea
gnu: gnome-sudoku: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-sudoku): Update to 3.22.2.
 2017-01-11 11:34:45 -05:00
Mark H Weaver 7399296264
gnu: gnome-mines: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-mines): Update to 3.22.2.
[inputs]: Add libgnome-games-support.
 2017-01-11 11:34:43 -05:00
Mark H Weaver f4eae76fb9
gnu: gnome-klotski: Update to 3.22.1. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.22.1.
[inputs]: libgames-support -> libgnome-games-support.
 2017-01-11 11:34:41 -05:00
Mark H Weaver 43ec26046c
gnu: Add libgnome-games-support. 
* gnu/packages/gnome.scm (libgnome-games-support): New variable.
 2017-01-11 11:34:39 -05:00
Mark H Weaver ac20cd7bbd
gnu: telepathy-mission-control: Update to 5.16.4. 
* gnu/packages/freedesktop.scm (telepathy-mission-control): Update to 5.16.4.
[source][uri]: Use .tar.gz file.
 2017-01-11 11:34:38 -05:00
Mark H Weaver f169ad102e
gnu: gnome-tweak-tool: Update to 3.22.0. 
* gnu/packages/gnome.scm (gnome-tweak-tool): Update to 3.22.0.
 2017-01-11 11:34:36 -05:00
Mark H Weaver acc5b65ef2
gnu: gnome-system-monitor: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-system-monitor): Update to 3.22.2.
 2017-01-11 11:34:34 -05:00
Mark H Weaver efa355bceb
gnu: gnome-screenshot: Update to 3.22.0. 
* gnu/packages/gnome.scm (gnome-screenshot): Update to 3.22.0.
 2017-01-11 11:34:32 -05:00
Mark H Weaver 4b8aae4177
gnu: gnome-calendar: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-calendar): Update to 3.22.2.
[inputs]: Add gsettings-desktop-schemas.
 2017-01-11 11:34:31 -05:00
Mark H Weaver b9e63fc9cb
gnu: gnome-backgrounds: Update to 3.22.1. 
* gnu/packages/gnome.scm (gnome-backgrounds): Update to 3.22.1.
 2017-01-11 11:34:29 -05:00
Mark H Weaver fd408e296f
gnu: dconf-editor: Update to 3.22.1. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.1.
 2017-01-11 11:34:27 -05:00
Mark H Weaver 3edeaeb229
gnu: baobab: Update to 3.22.1. 
* gnu/packages/gnome.scm (baobab): Update to 3.22.1.
 2017-01-11 11:34:25 -05:00
Mark H Weaver 7d04b13c14
gnu: d-feet: Update to 0.3.11. 
* gnu/packages/gnome.scm (d-feet): Update to 0.3.11.
 2017-01-11 11:34:24 -05:00
Mark H Weaver 4faa8abebe
gnu: rhythmbox: Update to 3.4.1. 
* gnu/packages/gnome.scm (rhythmbox): Update to 3.4.1.
 2017-01-11 11:34:22 -05:00
Mark H Weaver e6f5e6b65a
gnu: file-roller: Update to 3.22.2. 
* gnu/packages/gnome.scm (file-roller): Update to 3.22.2.
 2017-01-11 11:34:20 -05:00
Mark H Weaver 76aea80d45
gnu: devhelp: Update to 3.22.0. 
* gnu/packages/gnome.scm (devhelp): Update to 3.22.0.
 2017-01-11 11:34:18 -05:00
Mark H Weaver 491cc0dc61
gnu: yelp: Update to 3.22.0. 
* gnu/packages/gnome.scm (yelp): Update to 3.22.0.
 2017-01-11 11:34:16 -05:00
Mark H Weaver 0803a6b60d
gnu: epiphany: Update to 3.22.4. 
* gnu/packages/gnome.scm (epiphany): Update to 3.22.4.
 2017-01-11 11:34:15 -05:00
Mark H Weaver 0acaac9e3e
gnu: evince: Update to 3.22.1. 
* gnu/packages/gnome.scm (evince): Update to 3.22.1.
 2017-01-11 11:34:13 -05:00
Mark H Weaver 9beae2a2da
gnu: gedit: Update to 3.22.0. 
* gnu/packages/gnome.scm (gedit): Update to 3.22.0.
 2017-01-11 11:34:11 -05:00
Mark H Weaver f635aa8cd9
gnu: eog: Update to 3.20.5. 
* gnu/packages/gnome.scm (eog): Update to 3.20.5.
 2017-01-11 11:34:09 -05:00
Mark H Weaver 7f760a8474
gnu: totem: Update to 3.22.0. 
* gnu/packages/gnome.scm (totem): Update to 3.22.0.
[source]: Remove patch.
* gnu/packages/patches/totem-debug-format-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-11 11:34:08 -05:00
Mark H Weaver 22753632f7
gnu: grilo-plugins: Update to 0.3.3. 
* gnu/packages/gnome.scm (grilo-plugins): Update to 0.3.3.
 2017-01-11 11:34:06 -05:00
Mark H Weaver e7305878d3
gnu: grilo: Update to 0.3.2. 
* gnu/packages/gnome.scm (grilo): Update to 0.3.2.
[inputs]: Add nettle.
 2017-01-11 11:34:04 -05:00
Mark H Weaver 5e503e73a4
gnu: upower: Update to 0.99.4. 
* gnu/packages/gnome.scm (upower): Update to 0.99.4.
* gnu/packages/patches/upower-builddir.patch: Adapt.
 2017-01-11 11:34:02 -05:00
Mark H Weaver 59339bb480
gnu: gnome-terminal: Update to 3.22.1. 
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.22.1.
 2017-01-11 11:34:00 -05:00
Mark H Weaver de1215e20b
gnu: vte: Update to 0.46.1. 
* gnu/packages/gnome.scm (vte): Update to 0.46.1.
[propagated-inputs]: Add pcre2.
 2017-01-11 11:33:58 -05:00
Mark H Weaver 6b7d7e9b6f
gnu: gusb: Update to 0.2.9. 
* gnu/packages/gnome.scm (gusb): Update to 0.2.9.
 2017-01-11 11:33:56 -05:00
Mark H Weaver 8852ca2461
gnu: gvfs: Update to 1.30.3. 
* gnu/packages/gnome.scm (gvfs): Update to 1.30.3.
[inputs]: Add libcap and polkit.
 2017-01-11 11:33:54 -05:00
Mark H Weaver 41d54c1558
gnu: gnome-themes-standard: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-themes-standard): Update to 3.22.2.
 2017-01-11 11:33:52 -05:00
Mark H Weaver ea2c15825c
gnu: adwaita-icon-theme: Update to 3.22.0. 
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.22.0.
 2017-01-11 11:33:50 -05:00
Mark H Weaver b62a0070bf
gnu: hicolor-icon-theme: Update to 0.15. 
* gnu/packages/gnome.scm (hicolor-icon-theme): Update to 0.15.
[source][uri]: Use .tar.xz file.
 2017-01-11 11:33:49 -05:00
Mark H Weaver b18e5945b6
gnu: font-abattis-cantarell: Update to 0.0.25. 
* gnu/packages/fonts.scm (font-cantarell): Update to 0.0.25.
 2017-01-11 11:33:47 -05:00
Mark H Weaver aab951cda6
gnu: evolution-data-server: Update to 3.22.3. 
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.22.3.
 2017-01-11 11:33:45 -05:00
Mark H Weaver b1cd747b4f
gnu: gnome-online-accounts: Update to 3.22.3. 
* gnu/packages/gnome.scm (gnome-online-accounts): Update to 3.22.3.
 2017-01-11 11:33:44 -05:00
Mark H Weaver e980cbe99a
gnu: totem-pl-parser: Update to 3.10.7. 
* gnu/packages/gnome.scm (totem-pl-parser): Update to 3.10.7.
[source][uri]: Use 'version-major+minor'.
 2017-01-11 11:33:42 -05:00
Mark H Weaver c01deb86dc
gnu: gnome-desktop: Update to 3.22.2. 
* gnu/packages/gnome.scm (gnome-desktop): Update to 3.22.2.
 2017-01-11 11:33:40 -05:00
Mark H Weaver 0dd6aed9bd
gnu: libpeas: Update to 1.20.0. 
* gnu/packages/gnome.scm (libpeas): Update to 1.20.0.
 2017-01-11 11:33:38 -05:00
Mark H Weaver bd03f9db44
gnu: libgweather: Update to 3.20.4. 
* gnu/packages/gnome.scm (libgweather): Update to 3.20.4.
 2017-01-11 11:33:36 -05:00
Mark H Weaver 195bfa68d5
gnu: libnotify: Update to 0.7.7. 
* gnu/packages/gnome.scm (libnotify): Update to 0.7.7.
 2017-01-11 11:33:35 -05:00
Mark H Weaver 0abc663433
gnu: libgnomekbd: Update to 3.22.0. 
* gnu/packages/gnome.scm (libgnomekbd): Update to 3.22.0.
 2017-01-11 11:33:33 -05:00
Mark H Weaver 80f2d23a52
gnu: libchamplain: Update to 0.12.14. 
* gnu/packages/gnome.scm (libchamplain): Update to 0.12.14.
 2017-01-11 11:33:31 -05:00
Mark H Weaver 70241d9d7e
gnu: clutter-gst: Update to 3.0.22. 
* gnu/packages/gnome.scm (clutter-gst): Update to 3.0.22.
 2017-01-11 11:33:29 -05:00
Mark H Weaver a6e448358d
gnu: clutter-gtk: Update to 1.8.2. 
* gnu/packages/gnome.scm (clutter-gtk): Update to 1.8.2.
 2017-01-11 11:33:28 -05:00
Mark H Weaver 6a55accc80
gnu: cogl: Update to 1.22.2. 
* gnu/packages/gnome.scm (cogl): Update to 1.22.2.
 2017-01-11 11:33:26 -05:00
Mark H Weaver 124596f29a
gnu: gtkmm@2: Update to 2.24.5. 
* gnu/packages/gtk.scm (gtkmm-2): Update to 2.24.5.
 2017-01-11 11:33:24 -05:00
Mark H Weaver b1d6910e5d
gnu: gtkmm: Update to 3.22.0. 
* gnu/packages/gtk.scm (gtkmm): Update to 3.22.0.
 2017-01-11 11:33:23 -05:00
Mark H Weaver 44350d23da
gnu: gtk+: Update to 3.22.6. 
* gnu/packages/gtk.scm (gtk+): Update to 3.22.6.
 2017-01-11 11:33:21 -05:00
Mark H Weaver 8d2952e351
gnu: at-spi2-atk: Update to 2.22.0. 
* gnu/packages/gtk.scm (at-spi2-atk): Update to 2.22.0.
 2017-01-11 11:33:19 -05:00
Mark H Weaver d8c6438fe3
gnu: at-spi2-core: Update to 2.22.0. 
* gnu/packages/gtk.scm (at-spi2-core): Update to 2.22.0.
 2017-01-11 11:33:17 -05:00
Mark H Weaver 3084d8f4c3
gnu: atk: Update to 2.22.0. 
* gnu/packages/gtk.scm (atk): Update to 2.22.0.
 2017-01-11 11:33:15 -05:00
Mark H Weaver 53c18fac01
gnu: gtksourceview: Update to 3.22.2. 
* gnu/packages/gtk.scm (gtksourceview): Update to 3.22.2.
 2017-01-11 11:33:14 -05:00
Mark H Weaver 8c44bd581e
gnu: pango: Update to 1.40.3. 
* gnu/packages/gtk.scm (pango): Update to 1.40.3.
 2017-01-11 11:33:12 -05:00
Mark H Weaver f8671271dd
gnu: harfbuzz: Update to 1.4.1. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.4.1.
 2017-01-11 11:33:10 -05:00
Mark H Weaver 532cbe22c4
gnu: glib-networking: Update to 2.50.0. 
* gnu/packages/gnome.scm (glib-networking): Update to 2.50.0.
 2017-01-11 11:33:09 -05:00
Mark H Weaver d7a6d2ed6e
gnu: python-pygobject: Update to 3.22.0. 
* gnu/packages/glib.scm (python-pygobject): Update to 3.22.0.
 2017-01-11 11:33:07 -05:00
Mark H Weaver 707ae4e6e8
gnu: gsettings-desktop-schemas: Update to 3.22.0. 
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 3.22.0.
 2017-01-11 11:33:05 -05:00
Mark H Weaver 562a79de7d
gnu: desktop-file-utils: Update to 0.23. 
* gnu/packages/gnome.scm (desktop-file-utils): Update to 0.23.
 2017-01-11 11:33:03 -05:00
Mark H Weaver b43b584f8e
gnu: shared-mime-info: Update to 1.8. 
* gnu/packages/gnome.scm (shared-mime-info): Update to 1.8.
 2017-01-11 11:33:01 -05:00
Mark H Weaver ee2b2d2fe9
gnu: gmime: Update to 2.6.22. 
* gnu/packages/mail.scm (gmime): Update to 2.6.22.
 2017-01-11 11:33:00 -05:00
Mark H Weaver e60d3a5593
gnu: gdk-pixbuf: Eliminate graft. 
* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.3.
[replacement]: Remove field.
(gdk-pixbuf/fixed): Remove variable.
(package/inherit): Remove macro.
(gdk-pixbuf+svg): Remove use of 'package/inherit'.
 2017-01-11 11:32:58 -05:00
Mark H Weaver e31677719b
gnu: libgee: Update to 0.18.1. 
* gnu/packages/gnome.scm (libgee): Update to 0.18.1.
 2017-01-11 11:32:56 -05:00
Mark H Weaver 40a62e60c1
gnu: vala: Update to 0.34.4. 
* gnu/packages/gnome.scm (vala): Update to 0.34.4.
 2017-01-11 11:32:55 -05:00
Mark H Weaver aae468e980
gnu: gobject-introspection: Update to 1.50.0. 
* gnu/packages/glib.scm (gobject-introspection): Update to 1.50.0.
 2017-01-11 11:32:52 -05:00
Mark H Weaver ef51eb9907
gnu: libgsf: Update to 1.14.41. 
* gnu/packages/gnome.scm (libgsf): Update to 1.14.41.
 2017-01-11 11:32:50 -05:00
Mark H Weaver 919fc6aa03
gnu: dbus-glib: Update to 0.108. 
* gnu/packages/glib.scm (dbus-glib): Update to 0.108.
 2017-01-11 11:32:47 -05:00
Mark H Weaver 8344a85e9e
gnu: libxml++: Update to 3.0.1. 
* gnu/packages/gnome.scm (libxml++): Update to 3.0.1.
 2017-01-11 11:32:45 -05:00
Mark H Weaver 2913a8195d
gnu: glibmm: Update to 2.50.0. 
* gnu/packages/glib.scm (glibmm): Update to 2.50.0.
 2017-01-11 11:32:43 -05:00
Mark H Weaver 2b95aed464
gnu: glib: Update to 2.50.2. 
* gnu/packages/glib.scm (glib): Update to 2.50.2.
[inputs]: Add util-linux.
 2017-01-11 11:32:41 -05:00
Mark H Weaver d0d0f8d1de
gnu: mesa: Update to 13.0.3. 
* gnu/packages/gl.scm (mesa): Update to 13.0.3.
 2017-01-11 11:32:40 -05:00
Mark H Weaver b02733d495
gnu: libosinfo: Fix substitute fetching for usb.ids. 
* gnu/packages/qemu.scm (libosinfo)[native-inputs]: Add 'file-name' field to
'origin' record of "usb.ids".  Otherwise, the default file name contains a "?"
which leads to failure to fetch nars from substitute servers.
 2017-01-11 11:32:38 -05:00
David Craven c5edbb9790
gnu: ardour: Add eudev dependency. 
* gnu/packages/audio.scm (ardour)[inputs]: Add eudev.
 2017-01-11 11:23:44 -05:00
David Craven c96cb01a88
Revert "gnu: Add threaded variants of fftw and fftwf for Ardour and mod-host." 
These variants are no longer needed.

Followup to 86f4e9d76a.

This reverts commit 45591fd7fd.
 2017-01-11 11:23:43 -05:00
Ludovic Courtès 9e485ffa1b
gnu: kcrash: Work around race condition when starting Xvfb. 
Sometimes tests would start running before Xvfb is listening.
See <https://hydra.gnu.org/build/1750201>.

* gnu/packages/kde-frameworks.scm (kcrash)[arguments]: In
'start-xorg-server', add 'sleep' call after starting Xvfb.  Pass "Xvfb"
to 'system' instead of its absolute file name.
 2017-01-11 11:23:41 -05:00
Leo Famulari dca73a742c
Revert "gnu: nss: Add comment about test failures in NSS 3.27.2" 
This reverts commit 4f6ff977c2.
 2017-01-11 11:23:39 -05:00
Efraim Flashner 5a52e86eb4
gnu: cairomm: Update to 1.12.2. 
* gnu/packages/gtk.scm (cairomm): Update to 1.12.2.
[source]: Download from cairographics.org.
[home-page]: Use https.
 2017-01-11 11:23:37 -05:00
Efraim Flashner b3822954ea
gnu: cairo: Update to 1.14.8. 
* gnu/packages/gtk.scm (cairo): Update to 1.14.8.
[source]: Use https.
[home-page]: Use https.
 2017-01-11 11:23:36 -05:00
Efraim Flashner 16f6ee9932
gnu: harfbuzz: Update to 1.3.4. 
* gnu/packages/gtk.scm (harfbuzz): Update to 1.3.4.
 2017-01-11 11:23:34 -05:00
Efraim Flashner 51f0592fbf
gnu: poppler: Update to 0.50.0. 
* gnu/packages/pdf.scm (poppler): Update to 0.50.0.
 2017-01-11 11:23:32 -05:00
Efraim Flashner f8489f160b
gnu: cups-filters: Update to 1.13.1. 
* gnu/packages/cups.scm (cups-filters): Update to 1.13.1.
[inputs]: Switch libjpeg-8 to libjpeg.
[arguments]: Disable driverless printing, set location for bash shell.
 2017-01-11 11:23:30 -05:00
David Thompson b4c8c413ca
gnu: mesa: Enable floating point textures. 
* gnu/packages/gl.scm (mesa): Add --enable-texture-float to configure flags.
 2017-01-11 11:23:29 -05:00
Marius Bakke 5e107b22df
gnu: libxpm: Update to 3.5.12. 
* gnu/packages/xorg.scm (libxpm): Update to 3.5.12.
 2017-01-11 11:23:27 -05:00
Tobias Geerinckx-Rice 45e38a07eb
gnu: kmod: Update to 23. 
* gnu/packages/linux.scm (kmod): Update to 23.
 2017-01-11 11:23:25 -05:00
John Darrington 54d8d0fef1
gnu: Patch libxt's default search path. 
* gnu/packages/patches/libxt-guix-search-paths.patch: New file.
* gnu/packages/xorg.scm (libxt) [source]: Add patch.
 2017-01-11 11:23:23 -05:00
Leo Famulari 7b903a920c
gnu: eyed3: Update to 0.7.10. 
* gnu/packages/mp3.scm (eyed3): Update to 0.7.10.
 2017-01-11 00:48:48 -05:00
Leo Famulari 541b3f59ae
gnu: beets: Update to 1.4.3. 
* gnu/packages/music.scm (beets): Update to 1.4.3.
 2017-01-11 00:48:47 -05:00
Leo Famulari 653439c6b1
gnu: python-mutagen: Update to 1.36. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.36.
 2017-01-11 00:48:44 -05:00
Kei Kebreau 2fbc004f43
gnu: moc: Update to 2.5.2. 
* gnu/packages/music.scm (moc): Update to 2.5.2.
[source](modules, snippet): Remove timestamps from the output.
 2017-01-10 20:30:28 -05:00
Leo Famulari b0a567640c
gnu: cracklib: Fix buffer overflow. 
* gnu/packages/patches/cracklib-fix-buffer-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/password-utils.scm (cracklib)[source]: Use it.
 2017-01-10 17:52:42 -05:00
Leo Famulari 4b96149d8b
gnu: libtiff: Fix CVE-2016-{10092,10093,10094} and others. 
* gnu/packages/patches/libtiff-CVE-2016-10092.patch,
gnu/packages/patches/libtiff-CVE-2016-10093.patch,
gnu/packages/patches/libtiff-CVE-2016-10094.patch,
gnu/packages/patches/libtiff-assertion-failure.patch,
gnu/packages/patches/libtiff-divide-by-zero-ojpeg.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcp.patch,
gnu/packages/patches/libtiff-divide-by-zero-tiffcrop.patch,
gnu/packages/patches/libtiff-divide-by-zero.patch,
gnu/packages/patches/libtiff-heap-overflow-pixarlog-luv.patch,
gnu/packages/patches/libtiff-heap-overflow-tif-dirread.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcp.patch,
gnu/packages/patches/libtiff-heap-overflow-tiffcrop.patch,
gnu/packages/patches/libtiff-invalid-read.patch,
gnu/packages/patches/libtiff-null-dereference.patch,
gnu/packages/patches/libtiff-tiffcp-underflow.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff)[replacement]: New field.
(libtiff/fixed): New variable.
 2017-01-10 17:52:42 -05:00
Marius Bakke 8966c6b439
gnu: notmuch: Update to 0.23.5. 
* gnu/packages/mail.scm (notmuch, python2-notmuch): Update to 0.23.5.
 2017-01-10 23:42:38 +01:00
Marius Bakke 0d11a69f30
gnu: xapian: Update to 1.4.2. 
* gnu/packages/search.scm (xapian): Update to 1.4.2.
 2017-01-10 23:42:38 +01:00
Ludovic Courtès 3c0f7910e4
gnu: gnutls: Replace with 3.5.8 [fixes GNUTLS-SA-2017-{1,2}]. 
* gnu/packages/tls.scm (gnutls-3.5.8): New variable.
(gnutls)[replacement]: New field.
 2017-01-10 23:40:33 +01:00
Marius Bakke 88f2dd1ddf
gnu: rofi: Update to 1.3.1. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.1.
 2017-01-10 22:35:05 +01:00
Ludovic Courtès 39dc70323c
gnu: youtube-dl: Update to 2017.01.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.01.10.  Change
URLs to yt-dl.org.
 2017-01-10 22:15:27 +01:00
Ludovic Courtès 082be6d2a1
gnu: e2fsprogs: Remove timestamp from 'libext2fs.info.gz'. 
* gnu/packages/linux.scm (e2fsprogs)[source](snippet): Patch
'doc/Makefile.in' to use the '-n' option of gzip.
 2017-01-10 22:15:26 +01:00
Ludovic Courtès 74d212911e
gnu: e2fsprogs: Use symlinks instead of hard links. 
* gnu/packages/linux.scm (e2fsprogs)[arguments]: Pass
"--enable-symlink-install".
 2017-01-10 22:15:26 +01:00
Leo Famulari 6d3e08d4e8
gnu: Add sysstat. 
* gnu/packages/linux.scm (sysstat): New variable.
 2017-01-10 13:38:35 -05:00
Tobias Geerinckx-Rice d4acb6db2f
gnu: python-click: Update to 6.7. 
* gnu/packages/python.scm (python-click): Update to 6.7.
 2017-01-10 17:36:57 +01:00
Mark H Weaver 3720371580
gnu: linux-libre@4.4: Update hash for fixed upstream tarball. 
The initial upload of linux-libre-4.4.41-gnu.tar.xz was corrupted.

* gnu/packages/linux.scm (linux-libre-4.4)[source]: Update hash.
 2017-01-10 11:04:13 -05:00
Ludovic Courtès 022c977258
gnu: libgit2, python-pygit2: Update to 0.25.1 [security fixes]. 
See <http://www.openwall.com/lists/oss-security/2017/01/10/5>.

* gnu/packages/version-control.scm (libgit2): Update to 0.25.1.
* gnu/packages/python.scm (python-pygit2): Update to 0.25.0.
 2017-01-10 15:49:49 +01:00
David Craven f3e44f5cd0
gnu: Add btrfs-progs/static. 
* gnu/packages/linux.scm (btrfs-progs/static): New variable.
 2017-01-10 12:00:34 +01:00
David Craven 313880c73a
gnu: e2fsck/static: Only copy e2fsck. 
* gnu/packages/linux.scm (e2fsck/static)[arguments]: Only copy e2fsck.
  [synopsis, description]: Adjust accordingly.
 2017-01-10 11:58:11 +01:00
Ricardo Wurmus f03168327f
gnu: Add pcc. 
* gnu/packages/c.scm (pcc): New variable.
 2017-01-10 11:30:42 +01:00
Ben Woodcroft cba53c60d5
gnu: ruby-sqlite3: Update to 1.3.13. 
* gnu/packages/ruby.scm (ruby-sqlite3): Update to 1.3.13.
 2017-01-10 18:40:58 +10:00
Mark H Weaver d33f889dac
gnu: linux-libre: Update to 4.9.2. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.2.
 2017-01-09 22:42:32 -05:00
Mark H Weaver 75fd35b670
gnu: linux-libre@4.4: Update to 4.4.41. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.41.
 2017-01-09 22:41:21 -05:00
Alex Kost 28fd01bceb
gnu: emacs-guix: Update to 0.2.2. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.2.2.
 2017-01-10 00:23:07 +03:00
Alex Kost f6b1dd233d
gnu: emacs-bui: Update to 1.1.0. 
* gnu/packages/emacs.scm (emacs-bui): Update to 1.1.0.
 2017-01-10 00:23:07 +03:00
ng0 5ed962263c
gnu: whois: Update to 5.2.14. 
* gnu/packages/networking.scm (whois): Update to 5.2.14.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-09 16:04:55 -05:00
Leo Famulari 5ba5b4b240
gnu: imagemagick: Update to 6.9.7-3. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-3.
 2017-01-09 14:18:51 -05:00
John Darrington 4f903085ac
Revert "gnu: Update imagemagick to version 7.0.4-3." 
This reverts commit dea228cf12.
 2017-01-09 20:06:26 +01:00
Mathieu Lirzin 04927b6f26
gnu: cuirass: Update to 0.0.1 revision 3. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 3.
[arguments]: Move 'bootstrap' phase before 'configure'.  Disable
"tests/repo.scm" test.
 2017-01-09 18:57:15 +01:00
John Darrington cac19f0df9
gnu: Update aqbanking to version 5.6.12. 
* gnu/packages/gnucash.scm (aqbanking): Update to version 5.6.12.
 2017-01-09 18:55:27 +01:00
John Darrington dea228cf12
gnu: Update imagemagick to version 7.0.4-3. 
* gnu/packages/imagemagick.scm: Update to version 7.0.4-3
 2017-01-09 18:55:22 +01:00
José Miguel Sánchez García 84aafbbb66
gnu: Add nim. 
* gnu/packages/nim.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add nim.scm.
 2017-01-09 18:01:52 +01:00
David Craven 5d18d776d2
gnu: rustc: Retain binutils. 
* gnu/packages/rust.scm (rustc)[arguments]: Retain binutils. Add
  wrap-rustc phase.

Problem reported by Ben Woodcroft <donttrustben@gmail.com>.
 2017-01-09 18:01:52 +01:00
John Darrington 834458f6ff
gnu: Simplify the downloads from http://www.aquamaniac.de 
* gnu/packages/gnucash.scm (aqbanking, gwenhyfar): Remove dummy parameter
from source url.
 2017-01-09 17:50:49 +01:00
Christopher Allan Webber ab4a1731d8
gnu: guile-8sync: Add #t at end of setenv phase. 
* gnu/packages/guile.scm: Add #t at end of setenv phase.
 2017-01-09 09:51:10 -06:00
Christopher Allan Webber c5793e7eb7
gnu: Add guile-8sync. 
* gnu/packages/guile.scm (guile-8sync): New variable.
 2017-01-09 09:41:30 -06:00
Thomas Danckaert 7bbf2e39f7
gnu: hdf4: Update to 4.2.12. 
* gnu/packages/maths.scm (hdf4): Update to 4.2.12.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Maxim Cournoyer 392c26b0d1
gnu: python-pip: Update to 9.0.1 
* gnu/packages/python.scm (python-pip): Update to 9.0.1.
[native-inputs]: Remove.
[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 15:55:57 +01:00
Alex Sassmannshausen 814b18e587
gnu: Add Guile-ICS. 
* gnu/packages/guile.scm (guile-ics): New variable.
 2017-01-09 11:34:09 +01:00
Danny Milosavljevic ee719fba2d
gnu: Add corrode. 
* gnu/packages/haskell.scm (corrode): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:44:52 +01:00
ng0 f048f12ba1
gnu: Add dotherside. 
* gnu/packages/qt.scm (dotherside): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:33:07 +01:00
ng0 bb0756c7c7
gnu: Add font-google-roboto. 
* gnu/packages/fonts.scm (font-google-roboto): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-09 10:33:07 +01:00
Mark H Weaver 96404be814
gnu: gdk-pixbuf: Update replacement to 2.36.3. 
* gnu/packages/gtk.scm (gdk-pixbuf/fixed): Update to 2.36.3.
 2017-01-08 23:42:03 -05:00
Mark H Weaver 86c41ec3e4
gnu: icecat: Add fixes from upstream mozilla-esr45. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add selected fixes
from the upstream mozilla-esr45 repository.
 2017-01-08 20:36:29 -05:00
Mark H Weaver 989862005a
gnu: icecat: Rename patches that have been assigned CVEs. 
* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Rename patches that
have since been assigned CVEs.
 2017-01-08 20:36:27 -05:00
Mark H Weaver b9acdad717
gnu: gdk-pixbuf: Replace with 2.36.2. 
* gnu/packages/gtk.scm (gdk-pixbuf)[replacement]: New field.
(gdk-pixbuf/fixed): New variable.
(package/inherit): New macro.
(gdk-pixbuf+svg): Use 'package/inherit'.
 2017-01-08 20:36:20 -05:00
Clément Lassieur 84bf2a2e74
gnu: prosody: Make config and data files visible to 'prosodyctl'. 
* gnu/packages/messaging.scm (prosody)[arguments]: Add a 'fix-makefile' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-08 23:38:49 +01:00
Clément Lassieur 5b4946180e
gnu: prosody: Add OpenSSL and Coreutils to the PATH of programs. 
* gnu/packages/messaging.scm (prosody)[arguments]: In 'wrap-programs'
phase, add 'openssl' and 'coreutils' to 'PATH'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-08 23:37:06 +01:00
Ludovic Courtès 9e3e972d1e
gnu: Add fprintd. 
* gnu/packages/freedesktop.scm (fprintd): New variable.
 2017-01-08 23:26:47 +01:00
Ludovic Courtès dfb01baec4
gnu: Add libfprint. 
* gnu/packages/freedesktop.scm (libfprint): New variable.
 2017-01-08 23:26:47 +01:00
David Craven ec460a2a37
gnu: font-liberation: Use @item in @enumerate. 
* gnu/packages/fonts.scm (font-liberation)[description]: Use @item.

Followup to 0102fba27c.
 2017-01-08 23:00:55 +01:00
Mark H Weaver 3a3e309975
gnu: ruby-yard: Fix typo in source URI. 
This is a followup to commit 6499893ef8.

* gnu/packages/ruby.scm (ruby-yard)[source][uri]: Fix typo.
 2017-01-08 07:25:45 -05:00
Ben Woodcroft 6499893ef8
gnu: ruby-yard: Update to 0.9.6. 
* gnu/packages/ruby.scm (ruby-yard): Update to 0.9.6.
[source]: Use 'GitHub' source.
[arguments]: Run tests without 'Rakefile'.
[native-inputs]: Replace 'ruby-rspec-2' with ruby-rspec'.
* gnu/packages/patches/ruby-yard-fix-skip-of-markdown-tests.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-08 11:10:28 +10:00
Mark H Weaver 57fe28a082
gnu: linux-libre: Update to 4.9.1. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.9.1.
* gnu/packages/linux-libre-4.8-x86_64.conf,
gnu/packages/linux-libre-4.8-i686.conf: Delete files.
* gnu/packages/linux-libre-4.9-x86_64.conf,
gnu/packages/linux-libre-4.9-i686.conf: New files.
* Makefile.am (KCONFIGS): Update accordingly.
 2017-01-07 19:42:36 -05:00
Mark H Weaver 0860081413
gnu: linux-libre@4.4: Update to 4.4.40. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.40.
 2017-01-07 19:42:23 -05:00
Leo Famulari 1c9cea74b4
gnu: python-pygpgme: Fix build failure. 
* gnu/packages/patches/python-pygpgme-fix-pinentry-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[source]: Use it.
 2017-01-07 19:00:58 -05:00
Clément Lassieur 261f56914c
gnu: econnman: Add missing input. 
* gnu/packages/connman.scm (econnman)[inputs]: Add python2-dbus.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 23:02:48 +01:00
Alex Griffin 2b84170782
gnu: gnome-mpv: Update to 0.11. 
* gnu/packages/video.scm (gnome-mpv): Update to 0.11.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 22:55:40 +01:00
Thomas Danckaert e10872cc83
gnu: gpgme: Patch CMake files. 
* gnu/packages/gnupg.scm (gpgme)[arguments]: Substitute '@libsuffix@' by
  '.so'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-07 22:55:40 +01:00
Ludovic Courtès b2859a4fef
gnu: zlib: Fix alternate download URL. 
* gnu/packages/compression.scm (zlib)[source](uri): Update SourceForge URL.
 2017-01-07 22:55:40 +01:00
Leo Famulari 9385f0e9cb
Revert "gnu: nspr: Update to 4.13.1." 
There were many reports that NSS failed to build with this change.

This reverts commit 707c65aad7.
 2017-01-07 15:38:30 -05:00
Ludovic Courtès d7d5050c51
gnu: ao-cad: Point 'LD_LIBRARY_PATH' to Mesa. 
* gnu/packages/engineering.scm (ao)[arguments]: In
'install-guile-bindings', wrap 'ao-guile' to set 'LD_LIBRARY_PATH'.
[inputs]: Add MESA.
 2017-01-07 00:38:03 +01:00
Tobias Geerinckx-Rice a2bd16ff99
gnu: vim: Update to 8.0.0147. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0147.
 2017-01-07 00:26:23 +01:00
Tobias Geerinckx-Rice 0102fba27c
gnu: font-liberation: Use @enumerate in description. 
* gnu/packages/fonts.scm (font-liberation)[description]: Use @enumerate.
 2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice b4774d87e4
gnu: fonts: Improve synopses & descriptions. 
* gnu/packages/fonts.scm (font-google-noto, font-hack)[synopsis,
description]: Fix typos, grammar, and general style only.
(font-dejavu, font-terminus, font-wqy-zenhei)[description]: Likewise.
 2017-01-07 00:26:22 +01:00
Tobias Geerinckx-Rice 8837860c66
gnu: fonts: Use install-file where appropriate. 
* gnu/packages/fonts.scm (font-ubuntu, font-dejavu, font-bitstream-vera,
font-gnu-freefont-ttf, font-liberation, font-wqy-zenhei, font-anonymous-pro,
font-google-noto, font-un, font-hack): Substitute the simpler INSTALL-FILE
for every COPY-FILE invoked with redundant arguments.
 2017-01-07 00:26:12 +01:00
Tobias Geerinckx-Rice 9657aeb187
gnu: python-tblib: Properly @end enumerate. 
* gnu/packages/python.scm (python-tblib)[description]: Don't use
‘@end itemize’ to end an ‘@enumerate’ block.
 2017-01-07 00:23:53 +01:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459. 
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
 2017-01-06 13:50:18 -05:00
Leo Famulari 707c65aad7
gnu: nspr: Update to 4.13.1. 
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
 2017-01-06 13:09:05 -05:00
Ricardo Wurmus 3a3bf2f819
gnu: Add r-copywriter. 
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
 2017-01-06 16:31:19 +01:00
Ricardo Wurmus d407bdb931
gnu: Add r-copyhelper. 
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
 2017-01-06 16:31:14 +01:00
Ricardo Wurmus 6193563a36
gnu: Add r-chipseq. 
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
 2017-01-06 16:31:02 +01:00
Christopher Baines fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'. 
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Christopher Baines 7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system. 
This allows gobject introspection namespaces to be found.

* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-06 10:23:27 +01:00
Ben J Woodcroft dbf9d37114
gnu: bioruby: Update to 1.5.1. 
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
 2017-01-06 19:06:07 +10:00
Ben J Woodcroft 0c37e2a3d2
gnu: cd-hit: Update to 4.6.6. 
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
 2017-01-06 19:06:03 +10:00
Leo Famulari e50d5b8c9d
gnu: khal: Disable failing tests. 
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
 2017-01-06 03:19:40 -05:00
Leo Famulari e0c32fc817
gnu: vdirsyncer: Update to 0.14.1. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
 2017-01-06 03:19:40 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
 2017-01-06 03:19:36 -05:00
Ludovic Courtès fbec5abeef
gnu: gv: Do not propagate Ghostscript. 
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
 2017-01-05 23:45:38 +01:00
Alex Kost ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0. 
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
 2017-01-06 00:31:03 +03:00
Alex Kost 922ab34446
gnu: magit: Update to 2.10.0. 
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
 2017-01-06 00:29:23 +03:00
Alex Kost cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
 2017-01-06 00:29:23 +03:00
Danny Milosavljevic 6c8a387af2
gnu: Add ghc-markdown-unlit. 
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice 12c15242f4
gnu: beep: Ignore substitute* return value. 
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
 2017-01-05 17:40:54 +01:00
David Thompson 543bd0eede
gnu: sdl2: Add fcitx input. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
 2017-01-05 11:27:10 -05:00
David Thompson e0101b54b7
gnu: sdl2: Fix double input events bug. 
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
 2017-01-05 11:22:32 -05:00
Leo Famulari f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'." 
This commit causes too many rebuilds. It will be re-committed to core-updates.

This reverts commit 5b2834ae79.
 2017-01-05 11:22:07 -05:00
Leo Famulari 5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'. 
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
 2017-01-05 11:06:06 -05:00
Marius Bakke d9d23101ce
gnu: irssi: Update to 1.0.0. 
* gnu/packages/irc.scm (irssi): Update to 1.0.0.
[arguments]: Remove --with-ncurses configure flag.
[native-inputs]: Move 'perl' to ...
[inputs]: ... here.
[home-page]: Use HTTPS.
 2017-01-05 16:44:34 +01:00
Marius Bakke 1bd858cc14
gnu: Fix indentation of some python packages. 
This is a followup to abe2ec73..807a5b32.

* gnu/packages/python.scm (python-snowballstemmer,
  python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
 2017-01-05 16:28:01 +01:00
Danny Milosavljevic 807a5b32bf
gnu: Add python-sphinx-alabaster-theme. 
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
  python2-sphinx-alabaster-theme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 754bfd7019
gnu: Add python-sphinx-cloud-sptheme. 
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
  python2-sphinx-cloud-sptheme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:27 +01:00
Danny Milosavljevic 89cd988b6c
gnu: Add python-snowballstemmer. 
* gnu/packages/python.scm (python-snowballstemmer,
  python2-snowballstemmer): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-01-05 16:17:26 +01:00
José Miguel Sánchez García abe2ec735f
gnu: Add beep. 
* gnu/packages/terminals.scm (beep): New variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-01-05 13:09:19 +01:00
Tobias Geerinckx-Rice 88a46c9812
gnu: Remove unused module import from (gnu packages mtools). 
This is a follow-up to commit 3b0f2ba46b.

* gnu/packages/mtools.scm: Remove import of (gnu packages python).
 2017-01-05 13:09:19 +01:00
Ben Woodcroft 19e5fb6030
gnu: ruby-nokogiri: Update to 1.7.0.1. 
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
 2017-01-05 21:00:51 +10:00
Ben Woodcroft 8e941f2068
gnu: ruby-hoe: Update to 3.16.0. 
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
 2017-01-05 20:52:22 +10:00
Leo Famulari 5f0fabec54
gnu: unrtf: Fix CVE-2016-10091. 
* gnu/packages/patches/unrtf-CVE-2016-10091.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/unrtf.scm (unrtf)[source]: Use it.
 2017-01-04 14:42:58 -05:00
Alex Griffin 7a203059d3
gnu: libreoffice: Update to 5.1.6.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.1.6.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-04 14:37:58 -05:00
David Craven 3dcaa1226d
gnu: ocamlmod: Enable tests. 
Followup to 93eeadf022.

* gnu/packages/ocaml.scm (ocamlmod)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
 2017-01-04 19:10:01 +01:00
David Craven 337273e41f
gnu: ocaml-ounit: Enable tests. 
Followup to 7a76b4afd0.

* gnu/packages/ocaml.scm (ocaml-ounit)[arguments]: Enable tests.

Problem reported by Julien Lepiller <julien@lepiller.eu>.
 2017-01-04 19:10:00 +01:00
Efraim Flashner 9c64f76e8a
gnu: aria2: Update to 1.30.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.30.0.
 2017-01-04 19:15:00 +02:00
Ricardo Wurmus 68f9067324
gnu: inkscape: Update to 0.92.0. 
* gnu/packages/patches/inkscape-drop-wait-for-targets.patch: Remove it.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/inkscape.scm (inkscape): Update to 0.92.0.
[build-system]: Use "cmake-build-system".
[native-inputs]: Add glib:bin.
[arguments]: Remove obsolete arguments; disable tests.
 2017-01-04 18:06:44 +01:00
Julien Lepiller 6548e53fcb
gnu: Add ocaml-cmdliner. 
* gnu/packages/ocaml.scm (ocaml-cmdliner): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller eb1ba73185
gnu: Add ocaml-mtime. 
* gnu/packages/ocaml.scm (ocaml-mtime): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 63147e5e1e
gnu: Add ocaml-rresult. 
* gnu/packages/ocaml.scm (ocaml-rresult): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller a359c7277c
gnu: Add ocaml-topkg. 
* gnu/packages/ocaml.scm (ocaml-topkg): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 704b990c36
gnu: Add ocaml-result. 
* gnu/packages/ocaml.scm (ocaml-result): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller 44c23cb8d8
gnu: Add ocaml-bitstring. 
* gnu/packages/ocaml.scm (ocaml-bitstring): New variable.
* gnu/packages/patches/ocaml-bitstring-fix-configure.patch: New file.
* gnu/local.mk (dist_patch_DATA): New patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:11 +01:00
Julien Lepiller a5b5bd1d18
gnu: Add ocaml-bisect. 
* gnu/packages/ocaml.scm (ocaml-bisect): New variable.
* gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch:
  New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller 3d598ebd35
gnu: Add ocaml-stringext. 
* gnu/packages/ocaml.scm (ocaml-stringext): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller 0472836fce
gnu: Add ocaml-qtest. 
* gnu/packages/ocaml.scm (ocaml-qtest): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Julien Lepiller ff891f10ed
gnu: Add ocaml-frontc. 
* gnu/packages/ocaml.scm (ocaml-frontc): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 17:41:10 +01:00
Ludovic Courtès a614ce389f
gnu: Add Guile-Bash. 
* gnu/packages/guile.scm (guile-bash): New variable.
 2017-01-04 16:18:52 +01:00
Julien Lepiller ddf2b503b1
gnu: Add ocaml-zarith. 
* gnu/packages/ocaml.scm (ocaml-zarith): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:28 +01:00
Julien Lepiller 93eeadf022
gnu: Add ocamlmod. 
* gnu/packages/ocaml.scm (ocamlmod): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:25 +01:00
Julien Lepiller bc2c3bc627
gnu: Add camlzip. 
* gnu/packages/ocaml.scm (camlzip): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:05:06 +01:00
Julien Lepiller 7a76b4afd0
gnu: Add ocaml-ounit. 
* gnu/packages/ocaml.scm (ocaml-ounit): New variable.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:04:51 +01:00
Julien Lepiller ad3d730e3a
gnu: camlp4: Install camlp4 META file. 
* gnu/packages/ocaml.scm (camlp4)[arguments]: Install in OCAMLPATH and
  META file.
  (ocaml-findlib)[arguments]: Delete camlp4 META file.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:04:32 +01:00
Julien Lepiller 56f73eadc0
gnu: ocaml: Use a helper function to download from ocaml-forge. 
* gnu/packages/ocaml.scm (ocaml-forge-origin): New procedure.
  (lablgtk)[origin]: Use it.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:56 +01:00
Julien Lepiller e6876cb9dc
gnu: Add ocaml-build-system. 
* guix/build/ocaml-build-system.scm: New file.
* guix/build-system/ocaml.scm: New file.
* Makefile.am (MODULES): Add them.
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Adjuste OCAMLPATH.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:39 +01:00
Julien Lepiller e0ddaa8be3
gnu: camlp4: Compile native version. 
* gnu/packages/ocaml.scm (camlp4)[arguments]: Disable parallel-build.
  Change default target to "all" to compile native and byte version.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:16 +01:00
David Craven 2b1f7b83f7
gnu: ocaml: Fix indentation. 
* gnu/packages/ocaml.scm (ocaml): Fix indentation.
 2017-01-04 16:03:07 +01:00
Julien Lepiller 796a17ab01
gnu: ocaml: Add CAML_LD_LIBRARY_PATH search-path. 
* gnu/packages/ocaml.scm (ocaml)[native-search-paths]: Add
  CAML_LD_LIBRARY_PATH.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:03:00 +01:00
Julien Lepiller 8bd10c1082
gnu: ocaml: Add a .file directive to generated .s files. 
* gnu/packages/ocaml.scm (ocaml)[origin]: Add patch.
* gnu/packages/patches/ocaml-Add-a-.file-directive.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.

Signed-off-by: David Craven <david@craven.ch>
 2017-01-04 16:02:38 +01:00
David Craven 1ff755d1d5
gnu: Reorder imports in (gnu packages ocaml). 
* gnu/packages/ocaml.scm: Reorder imports alphabetically.
 2017-01-04 14:07:56 +01:00
David Craven d8e0a08c26
gnu: Use 'license:' prefix in (gnu packages ocaml). 
* gnu/packages/ocaml.scm (ocaml, opam, camlp4, camlp5, hevea, coq,
  proof-general, ocaml-menhir, lablgtk, unison, ocaml-findlib)[license]:
  Add prefix.
 2017-01-04 14:07:56 +01:00
David Craven 3254e1aba9
gnu: Add idris-lens. 
* gnu/packages/idris.scm (idris-lens): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 5a16d828b3
gnu: Add idris-bifunctors. 
* gnu/packages/idris.scm (idris-bifunctors): New variable.
 2017-01-04 12:11:14 +01:00
David Craven 4e17fff386
gnu: Add idris-wl-pprint. 
* gnu/packages/idris.scm (idris-wl-pprint): New variable.
 2017-01-04 12:11:14 +01:00
David Craven ea3b38f1e1
gnu: Add idris-lightyear. 
* gnu/packages/idris.scm (idris-lightyear, idris-default-arguments):
  New variables.
 2017-01-04 12:11:14 +01:00
David Craven ae482ce12d
gnu: idris: Move to (gnu packages idris). 
* gnu/packages/haskell.scm: Move 'idris' to...
* gnu/packages/idris.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add idris.scm.
 2017-01-04 11:51:36 +01:00
David Craven c7a7129c5a
gnu: idris: Update to 0.99. 
* gnu/packages/haskell.scm (idris): Update to 0.99.
 2017-01-04 11:44:07 +01:00
David Craven c0d5b6452b
gnu: Order module imports in (gnu packages haskell) alphabetically. 
* gnu/packages/haskell.scm: Order module imports alphabetically.
 2017-01-04 11:44:07 +01:00
Ricardo Wurmus de793e9a5a
gnu: ghc-language-c: Fix up. 
* gnu/packages/haskell.scm (ghc-language-c): Fix up indentation and
description.
 2017-01-04 11:41:43 +01:00
David Craven 3b7ccbe94c
build-system: cargo: Use correct cargo. 
* gnu/packages/rust.scm (cargo-bootstrap): Make private.
* guix/build-system/cargo.scm (default-cargo): Use cargo.
 2017-01-04 11:29:15 +01:00
David Craven b5a09649db
gnu: Add cargo. 
* gnu/packages/rust.scm (cargo): New variable.
 2017-01-04 11:29:14 +01:00
Danny Milosavljevic 2d2388e243
gnu: Add ghc-language-c. 
* gnu/packages/haskell.scm (ghc-language-c): New variable.
 2017-01-04 11:27:24 +01:00
Leo Famulari 324f4fc559
gnu: mcrypt: Fix patches for CVE-2012-{4409,4527}. 
This fixes CVE-2012-{4409,4527}.

This is a followup to commit fd1461879c.

* gnu/packages/patches/mcrypt-CVE-2012-4409.patch,
gnu/packages/patches/mcrypt-CVE-2012-4527.patch: Apply the patches to the mcrypt
source code.
 2017-01-04 02:46:51 -05:00
Alex Griffin 37e8a2e219
gnu: calibre: Update to 2.76.0. 
* gnu/packages/ebook.scm (calibre): Update to 2.76.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-04 00:00:34 -05:00
Alex Griffin f7e9f1cadc
gnu: feh: Update to 2.18. 
* gnu/packages/image-viewers.scm (feh): Update to 2.18.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin eb5378f902
gnu: bs1770gain: Update to 0.4.12. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.4.12.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin 648733dc14
gnu: dwm: Update to 6.1. 
* gnu/packages/suckless.scm (dwm): Update to 6.1.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:22 -05:00
Alex Griffin bc47382a5d
gnu: dmenu: Update to 4.6. 
* gnu/packages/suckless.scm (dmenu): Update to 4.6.
[inputs]: Add libxft and freetype.
[arguments]: Set FREETYPEINC in #:make-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin f3a53f3c8f
gnu: slock: Update to 1.4. 
* gnu/packages/suckless.scm (slock): Update to 1.4.
[source] Remove CVE-2016-6866 patch (no longer needed).
* gnu/packages/patches/slock-CVE-2016-6866.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Alex Griffin 8efd807f95
gnu: trash-cli: Update to 0.17.1.1. 
* gnu/packages/shellutils.scm (trash-cli): Update to 0.17.1.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 23:39:21 -05:00
Tobias Geerinckx-Rice 3b40213923
gnu: Add wimlib. 
* gnu/packages/backup.scm (wimlib): New variable.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 835d371f4b
gnu: parallel: Update to 20161222. 
* gnu/packages/parallel.scm (parallel): Update to 20161222.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 0b2a91d8b7
gnu: global: Update to 6.5.6. 
* gnu/packages/code.scm (global): Update to 6.5.6.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 02dadd3827
gnu: nano: Update to 2.7.3. 
* gnu/packages/nano.scm (nano): Update to 2.7.3.
 2017-01-04 05:14:22 +01:00
Tobias Geerinckx-Rice 3b3b60d037
gnu: Use HTTPS for all sourceforge.net home pages. 
* gnu/packages/admin.scm (mingetty, clusterssh)[home-page]: Use HTTPS.
* gnu/packages/audio.scm (libbs2b, soxr)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (bless)[home-page]: Likewise.
* gnu/packages/display-managers.scm (slim)[home-page]: Likewise.
* gnu/packages/games.scm (extremetuxracer)[home-page]: Likewise.
* gnu/packages/ghostscript.scm (gs-fonts)[home-page]: Likewise.
* gnu/packages/haskell.scm (ghc-regex-base, ghc-regex-posix,
ghc-regex-compat)[home-page]: Likewise.
* gnu/packages/image.scm (imlib2)[home-page]: Likewise.
* gnu/packages/libreoffice.scm (librevenge, libcmis, libodfgen, libmwaw)
[home-page]: Likewise.
* gnu/packages/linux.scm (hdparm, acpid, libavc1394, rng-tools)
[home-page]: Likewise.
* gnu/packages/mail.scm (esmtp)[home-page]: Likewise.
* gnu/packages/mp3.scm (ripperx)[home-page]: Likewise.
* gnu/packages/onc-rpc.scm (libtirpc)[home-page]: Likewise.
* gnu/packages/perl.scm (perl-czplib)[home-page]: Likewise.
* gnu/packages/python.scm (python-pyasn1-modules)[home-page]: Likewise.
* gnu/packages/xdisorg.scm (xosd)[home-page]: Likewise.
 2017-01-04 05:14:22 +01:00
Christopher Baines 0916dc526e
gnu: Add emacs-git-gutter 
* gnu/packages/emacs.scm (emacs-git-gutter): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 22:46:55 -05:00
Kei Kebreau ea5cc29561
gnu: supertux: Update to 0.5.1. 
* gnu/packages/games.scm (supertux): Update to 0.5.1.
 2017-01-03 18:07:45 -05:00
Leo Famulari f339f2773d
gnu: assword: Update to 0.10. 
* gnu/packages/password-utils.scm (assword): Update to 0.10.
[arguments]: Use Python 3 instead of Python 2.
[inputs]: Use Python 3 variants of inputs. Replace python2-pygpgme with
python-gpg. Remove python2-pygtk. Add python-pygobject.
[native-inputs]: Replace help2man with txt2man.
[arguments]: Remove PYTHONPATH from 'Makefile' in the 'manpage' phase.
 2017-01-03 12:35:45 -05:00
Leo Famulari 7637de2313
gnu: Add python-xdo. 
* gnu/packages/python.scm (python-xdo): New variable.
(python2-xdo): Use package-with-python2.
 2017-01-03 12:35:44 -05:00
Leo Famulari e871c332a0
gnu: python2-xdo: Update to 0.3. 
* gnu/packages/python.scm (python2-xdo): Update to 0.3.
 2017-01-03 12:35:44 -05:00
Leo Famulari e3dd1f0cb8
gnu: Add python-gpg. 
* gnu/packages/gnupg.scm (python-gpg, python2-gpg): New variable.
 2017-01-03 12:35:44 -05:00
Leo Famulari 9e0f16f23f
gnu: gpgme: Update to 1.8.0. 
* gnu/packages/gnupg.scm (gpgme): Update to 1.8.0.
[arguments]: Don't set 'GPG=gpg2' in #:configure-flags. GnuPG-2.x is
installed as 'gpg' on Guix.
 2017-01-03 12:35:44 -05:00
Ludovic Courtès 70c6341110
gnu: Add Zile-on-Guile. 
* gnu/packages/zile.scm (zile-on-guile): New variable.
 2017-01-03 18:16:01 +01:00
Marius Bakke e2c3037427
gnu: pcsc-lite: Update to 1.8.20 [fixes CVE-2016-10109]. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.20.
 2017-01-03 17:15:04 +01:00
Manolis Ragkousis 367f701379
gnu: glibc-hurd: Disable werror. 
* gnu/packages/base.scm (glibc/hurd)[arguments]: Add "--disable-werror".
 2017-01-03 16:00:43 +02:00
Manolis Ragkousis 62596a158b
gnu: Use hurd-triplet? to check if GNU/Hurd. 
* gnu/packages/make-bootstrap.scm (hurd-triplet?): Move it from here..
* gnu/packages/hurd.scm: ..to here. New exported procedure.
* gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)
  [arguments]: Replace string-match.
  [inputs]: Same.
* gnu/packages/cross-base.scm (cross-libc)[native-inputs]: Same.
 2017-01-03 16:00:39 +02:00
Kei Kebreau 6a37872cd2
gnu: chicken: Fix CVE-2016-{6830,6831}. 
* gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
* gnu/packages/scheme.scm (chicken)[source]: Use it.
 2017-01-03 08:35:02 -05:00
Kei Kebreau b9b6db45e8
gnu: chicken: Update to 4.11.1. 
* gnu/packages/scheme.scm (chicken): Update to 4.11.1.
 2017-01-03 08:34:54 -05:00
Roel Janssen 7b030c9f9b
gnu: r-plotrix: Update to 3.6-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
 2017-01-03 13:51:05 +01:00
Roel Janssen 0c74399d98
gnu: r-git2r: Update to 0.18.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
 2017-01-03 13:49:18 +01:00
Roel Janssen 807db78fc9
gnu: r-hmisc: Update to 4.0-2. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
  [propagated-inputs]: Add r-base64enc.
 2017-01-03 13:46:14 +01:00
Roel Janssen 437d064dc5
gnu: r-openssl: Update to 0.9.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
 2017-01-03 13:39:51 +01:00
Roel Janssen 596fcfac88
gnu: r-jsonlite: Update to 1.2. 
* gnu/packages/web.scm (r-jsonlite): Update to 1.2.
 2017-01-03 13:37:55 +01:00
Roel Janssen da13738ef0
gnu: r-ggplot2: Update to 2.2.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
 2017-01-03 13:34:53 +01:00
Roel Janssen 407a280103
gnu: r-genomicranges: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.2.
 2017-01-03 13:28:35 +01:00
Roel Janssen ac370a3397
gnu: r-genomeinfodb: Update to 1.10.2. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.2.
 2017-01-03 12:47:36 +01:00
Efraim Flashner 4fb14fad94
gnu: sudo: Update to 1.8.19p1. 
* gnu/packages/admin.scm (sudo): Update to 1.8.19p1.
 2017-01-03 10:12:27 +02:00
Brandon Ludwig b1251a2f96
gnu: arc-theme: Update to 20161119. 
* gnu/packages/gnome.scm (arc-theme): Update to 20161119.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:29:42 -05:00
Maxim Cournoyer 6155186838
gnu: gimp: Enable PDF support 
* gnu/packages/gimp.scm (gimp)[inputs]: Add poppler.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-03 00:18:51 -05:00
Leo Famulari 47932c0d44
gnu: lynx: Update to 2.8.9dev.11 [fixes CVE-2016-9179]. 
* gnu/packages/lynx.scm (lynx): Update to 2.8.9dev.11.
 2017-01-02 23:52:12 -05:00
Leo Famulari b3e2ea8d48
gnu: Add sonic. 
* gnu/packages/speech.scm (sonic): New variable.
 2017-01-02 18:03:10 -05:00
Mathieu OTHACEHE 5819431c59
gnu: Add cmst. 
* gnu/packages/connman.scm (cmst): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Mathieu OTHACEHE 125e3cdece
gnu: connman: Add dependency on polkit. 
* gnu/packages/connman.scm (connman)[arguments]: Add "--enable-polkit".
[inputs]: Add POLKIT.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-01-02 22:55:33 +01:00
Efraim Flashner 832d60dc01
gnu: mpv: Update to 0.23.0. 
* gnu/packages/video.scm (mpv): Update to 0.23.0.
 2017-01-02 21:48:49 +02:00
Efraim Flashner 8d2de491e5
gnu: openvpn: Update to 2.3.14. 
* gnu/packages/vpn.scm (openvpn): Update to 2.3.14.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 68b3627cd6
gnu: ffmpeg@2.8: Update to 2.8.10. 
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.10.
 2017-01-02 21:48:48 +02:00
Efraim Flashner 4b50daab00
gnu: jasper: Update to 2.0.10. 
* gnu/packages/image.scm (jasper): Update to 2.0.10.
 2017-01-02 21:48:38 +02:00
Ludovic Courtès 1a49a10a94
gnu: fftw: Factorize creation of the --enable-threads variant. 
* gnu/packages/algebra.scm (pthread-variant): New procedure.
(fftw-with-threads, fftwf-with-threads): Use it.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 7355634db3
gnu: Disambiguate packages with the same name. 
* gnu/packages/algebra.scm (fftw-with-threads, fftwf-with-threads): Add
'name' field.
* gnu/packages/llvm.scm (llvm-for-extempore): Likewise.
 2017-01-02 14:54:24 +01:00
Ludovic Courtès 9af076245f
gnu: gfortran: Remove non-'eq?' duplicate of gfortran@4.9. 
* gnu/packages/gcc.scm (gfortran): Turn into an alias for GFORTRAN-4.9.
 2017-01-02 14:54:24 +01:00
Tobias Geerinckx-Rice 1b5ea0922f
gnu: python-s3transfer: Update to 0.1.10. 
* gnu/packages/python.scm (python-s3transfer): Update to 0.1.10.
 2017-01-02 08:37:26 +01:00
Tobias Geerinckx-Rice 1f89fb1691
gnu: python-greenlet: Update to 0.4.11. 
* gnu/packages/python.scm (python-greenlet): Update to 0.4.11.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice 3753f2e6e9
gnu: python-mako: Update to 1.0.6. 
* gnu/packages/python.scm (python-mako): Update to 1.0.6.
 2017-01-02 08:37:25 +01:00
Tobias Geerinckx-Rice af27e845e1
gnu: awscli: Update to 1.11.35. 
* gnu/packages/python.scm (awscli): Update to 1.11.35.
 2017-01-02 08:37:24 +01:00
Tobias Geerinckx-Rice bbb99d6b37
gnu: python-werkzeug: Update to 0.11.15. 
* gnu/packages/python.scm (python-werkzeug): Update to 0.11.15.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice 27f9148e1d
gnu: python-backports-abc: Update to 0.5. 
* gnu/packages/python.scm (python-backports-abc): Update to 0.5.
 2017-01-02 08:37:23 +01:00
Tobias Geerinckx-Rice d79fa7da1b
gnu: python-decorator: Update to 4.0.10. 
* gnu/packages/python.scm (python-decorator): Update to 4.0.10.
 2017-01-02 08:37:22 +01:00
Tobias Geerinckx-Rice 819939cb94
gnu: python-pycparser: Use ‘modify-phases’ syntax. 
* gnu/packages/python.scm (python-pycparser)[arguments]: Use
‘modify-phases’.
 2017-01-02 08:37:21 +01:00
Tobias Geerinckx-Rice 5043b20dcd
gnu: python-pycparser: Update to 2.17. 
* gnu/packages/python.scm (python-pycparser): Update to 2.17.
 2017-01-02 08:28:28 +01:00
Leo Famulari 0d48ff811f
gnu: beets: Build with Python 3. 
* gnu/packages/music.scm (beets)[arguments]: Build with python@3.
(native-inputs): Use Python-2 variants of all inputs.
(inputs): Use Python-2 variants of all inputs. Remove python-pyechonest.
 2017-01-01 21:06:32 -05:00
Leo Famulari 27ccefc3d2
gnu: beets: Update to 1.4.2. 
* gnu/packages/music.scm (beets): Update to 1.4.2.
 2017-01-01 21:06:24 -05:00
Leo Famulari 2e161eafd8
gnu: python-pyicu: Update to 1.9.5. 
* gnu/packages/python.scm (python-pyicu, python2-pyicu): Update to 1.9.5.
[source]: Use pypi-uri.
 2017-01-01 20:15:06 -05:00
Theodoros Foradis 9a93f57473
gnu: yosys: Update to 0.7. 
* gnu/packages/fpga.scm (yosys): Update to 0.7.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis f90f6b683e
gnu: yosys: Add xdot functionality. 
* gnu/packages/fpga.scm (yosys)[inputs]: Add xdot, graphviz and psmisc.
[arguments]: Add 'fix-paths' phase.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Theodoros Foradis abdd28e8c1
gnu: Add xdot. 
* gnu/packages/graphviz.scm (xdot): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 20:06:43 -05:00
Leo Famulari 7be13d0006
gnu: python-ndg-httpsclient: Use pypi-uri. 
* gnu/packages/python.scm (python-ndg-httpsclient, python2-ndg-httpsclient)
[source]: Use pypi-uri.
 2017-01-01 17:01:32 -05:00
Ricardo Wurmus 5dbeccf5b4
gnu: diffoscope: Embed tool references. 
Fixes <http://bugs.gnu.org/25315>.

* gnu/packages/package-management.scm (diffoscope)[inputs]: Add
colordiff and vim.
[arguments]: Add "embed-tool-references" build phase to embed references
to "colordiff", "xxd", and "readelf".
 2017-01-01 21:53:50 +01:00
Alex Vong ed88dd4512
gnu: mariadb: Update to 10.1.20. 
* gnu/packages/databases.scm (mariadb): Update to 10.1.20.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:51:04 -05:00
Alex Vong e63b19f509
gnu: mysql: Update to 5.7.17. 
* gnu/packages/databases.scm (mysql): Update to 5.7.17.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-01-01 14:45:23 -05:00
Ricardo Wurmus 395bbfdbea
gnu: Add propeller-development-suite. 
* gnu/packages/embedded.scm (propeller-development-suite): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 3ebc86d9bd
gnu: Add spinsim. 
* gnu/packages/embedded.scm (spinsim): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 0a7860c438
gnu: Add spin2cpp. 
* gnu/packages/embedded.scm (spin2cpp): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus c6b96af794
gnu: Add propeller-load. 
* gnu/packages/embedded.scm (propeller-load): New variable.
 2017-01-01 13:56:28 +01:00
Ricardo Wurmus 150e0a1ec6
gnu: Add openspin. 
* gnu/packages/embedded.scm (openspin): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus eb88fbafcd
gnu: Add propeller-toolchain. 
* gnu/packages/embedded.scm (propeller-toolchain): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 0d0079b2c5
gnu: Add proplib. 
* gnu/packages/embedded.scm (proplib): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 68cb27840e
gnu: Add propeller-gcc. 
* gnu/packages/embedded.scm (propeller-gcc): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 2d7c92134e
gnu: Add propeller-binutils. 
* gnu/packages/embedded.scm (propeller-binutils): New variable.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus 6f5b1c9107
gnu: Add dummy linker for propeller-elf. 
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for
propeller-elf.
 2017-01-01 13:56:27 +01:00
Ricardo Wurmus c26ba570cc
gnu: clisp: Remove timestamps. 
* gnu/packages/lisp.scm (clisp)[arguments]: Add "remove-timestamps"
phase to remove "__DATE__" and "__TIME__".
 2017-01-01 13:55:50 +01:00
Ricardo Wurmus 636c77d066
gnu: clisp: Use modify-phases syntax. 
* gnu/packages/lisp.scm (clisp)[arguments]: Use modify-phases syntax.
 2017-01-01 13:55:50 +01:00
Alex Kost c50dc711a1
gnu: manaplus: Update to 1.6.12.24. 
* gnu/packages/games.scm (manaplus): Update to 1.6.12.24.
 2017-01-01 11:47:08 +03:00
Ben Woodcroft 25d84d3122
gnu: python-dendropy: Update to 4.2.0. 
* gnu/packages/bioinformatics.scm (python-dendropy): Update to 4.2.0.
[source]: Remove patch.
(python2-dendropy)[source]: Use the same source as python-dendropy.
* gnu/packages/patches/python-dendropy-exclude-failing-tests.patch: Remove
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-01-01 16:47:47 +10:00
Ben Woodcroft 322a583fcf
gnu: diamond: Update to 0.8.31. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.31.
 2017-01-01 16:47:47 +10:00
Ludovic Courtès 7fc2d377d1
gnu: nagios: Update to 4.2.4 [fixes CVE-2016-{9565,9566}]. 
* gnu/packages/monitoring.scm (nagios): Update to 4.2.4.
[native-inputs]: New field.
 2016-12-31 20:02:59 +01:00
Tobias Geerinckx-Rice b13a5b4d16
gnu: python-graphql-relay: Update to 0.4.5. 
* gnu/packages/python.scm (python-graphql-relay): Update to 0.4.5.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 0c315fb394
gnu: python-freezegun: Update to 0.3.8. 
* gnu/packages/python.scm (python-freezegun): Update to 0.3.8.
 2016-12-31 16:51:56 +01:00
Tobias Geerinckx-Rice 234ade2d7b
gnu: python-ply: Update to 3.9. 
* gnu/packages/python.scm (python-ply): Update to 3.9.
[source]: Use pypi-uri.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice ab0c342924
gnu: python-pyquery: Update to 1.2.17. 
* gnu/packages/python.scm (python-pyquery): Update to 1.2.17.
 2016-12-31 16:51:55 +01:00
Tobias Geerinckx-Rice 42734b9a88
gnu: python-click-log: Update to 0.1.8. 
* gnu/packages/python.scm (python-click-log): Update to 0.1.8.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice ae476d01da
gnu: python-ndg-httpsclient: Update to 0.4.2. 
* gnu/packages/python.scm (python-ndg-httpsclient): Update to 0.4.2.
 2016-12-31 16:51:54 +01:00
Tobias Geerinckx-Rice f165648e1b
gnu: python-ipykernel: Update to 4.5.2. 
* gnu/packages/python.scm (python-ipykernel): Update to 4.5.2.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 45cc957c72
gnu: python-jupyter-core: Update to 4.2.1. 
* gnu/packages/python.scm (python-jupyter-core): Update to 4.2.1.
 2016-12-31 16:51:53 +01:00
Tobias Geerinckx-Rice 594358f5b6
gnu: python2-fastlmm: Update to 0.2.26. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.26.
 2016-12-31 16:51:40 +01:00
Tobias Geerinckx-Rice a5f92ca04f
gnu: python-pytz: Update to 2016.10. 
* gnu/packages/python.scm (python-pytz): Update to 2016.10.
 2016-12-31 16:36:20 +01:00
Tobias Geerinckx-Rice bf5e4bc42a
gnu: python-pyyaml: Update to 3.12. 
* gnu/packages/python.scm (python-pyyaml): Update to 3.12.
[source]: Use pypi-uri.
 2016-12-31 15:27:24 +01:00
Tobias Geerinckx-Rice 7d2e758df5
gnu: python-pygments: Update to 2.1.3. 
* gnu/packages/python.scm (python-pygments): Update to 2.1.3.
 2016-12-31 15:27:23 +01:00
Kei Kebreau c055a37c8c
gnu: tiled: Update to 0.18.0. 
* gnu/packages/game-development.scm (tiled): Update to 0.18.0.
 2016-12-30 21:45:51 -05:00
ng0 da62a4a19e
gnu: mc: Partially fix absolute file paths. 
Partially fixes <http://bugs.gnu.org/25273>.

* gnu/packages/mc.scm (mc)[arguments]: Add new phase 'fix-absolutism.
This substitutes absolute file paths with functional file paths.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
Troy Sankey 0f391063d9
gnu: pius: Update to 2.2.2-0.891687c. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.2-0.891687c.
[inputs]: Change GNUPG-2.0 to GNUPG (2.1).

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-31 01:44:04 +01:00
José Miguel Sánchez García 68415aa4e1
gnu: libtermkey: Update to 0.19. 
* gnu/packages/terminals.scm (libtermkey): Update to 0.19.

Co-authored-by: Leo Famulari <leo@famulari.name>
 2016-12-30 16:15:25 -05:00
Leo Famulari 858b9afeaf
gnu: libpng: Mention CVE-2016-10087. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: Rename to ...
* gnu/packages/patches/libpng-CVE-2016-10087.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust.
* gnu/packages/image.scm (libpng/fixed)[source]: Use renamed patch.
 2016-12-30 14:33:21 -05:00
Mark H Weaver 4037e5f52b
gnu: linux-libre@4.1: Update to 4.1.37. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.37.
 2016-12-30 04:26:11 -05:00
Ben Woodcroft a29929b32c
gnu: multiqc: Update to 0.9. 
Suggested by Raoul Bonnal <ilpuccio.febo@gmail.com>.

* gnu/packages/bioinformatics.scm (multiqc): Update to 0.9.
[origin]: Add patch.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-12-30 17:22:43 +10:00
Chris Marusich 95d7d0c57f
gnu: elogind: Enable ACL support. 
* gnu/packages/freedesktop.scm (elogind) [inputs]: Add acl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:42:23 +01:00
Leo Famulari 87b5209558
gnu: mpd: Install systemd service files. 
* gnu/packages/mpd.scm (mpd)[arguments]: Add 'install-service-files' phase.
 2016-12-29 17:28:34 -05:00
Ricardo Wurmus 76b64381cb
gnu: r-genomicfeatures: Update to 1.26.2. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.2.
 2016-12-29 22:24:12 +01:00
Ricardo Wurmus 2f642e5229
gnu: r-biostrings: Update to 2.42.1. 
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.42.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 72c2693b9e
gnu: r-limma: Update to 3.30.7. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.7.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5796af9981
gnu: r-variantannotation: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.2.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 5d3acc0b36
gnu: r-edger: Update to 3.16.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.16.5.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 81a17b61e7
gnu: r-genomeinfodb: Update to 1.10.1. 
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 54d9b568fc
gnu: r-iranges: Update to 2.8.1. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus 86fc9c4a2c
gnu: r-s4vectors: Update to 0.12.1. 
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.1.
 2016-12-29 22:24:11 +01:00
Ricardo Wurmus c8ad8b6976
gnu: r-biocstyle: Update to 2.2.1. 
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.2.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus 007ee80277
gnu: r-deseq2: Update to 1.14.1. 
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.14.1.
 2016-12-29 22:24:10 +01:00
Ricardo Wurmus d0f0579e6f
gnu: r-annotate: Update to 1.52.1. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.52.1.
[propagated-inputs]: Add r-rcurl.
 2016-12-29 22:24:10 +01:00
Leo Famulari a57495e27a
gnu: khard: Update to 0.11.3. 
* gnu/packages/mail.scm (khard): Update to 0.11.3.
[arguments]: Build with python instead of python-2. Remove
'disable-egg-compression' phase.
[propagated-inputs]: Don't use python-2 variants of propagated-inputs.
 2016-12-29 16:12:13 -05:00
Ricardo Wurmus 35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus 28c041afe8
gnu: Add r-plogr. 
* gnu/packages/statistics.scm (r-plogr): New variable.
 2016-12-29 21:49:13 +01:00
Ricardo Wurmus ab607061cd
gnu: r-hmisc: Update to 4.0-1. 
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 0811f0f9d2
gnu: Add r-base64. 
* gnu/packages/statistics.scm (r-base64): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus ca380feb37
gnu: r-rmarkdown: Update to 1.3. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus 046e27e3f5
gnu: Add r-rprojroot. 
* gnu/packages/statistics.scm (r-rprojroot): New variable.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus b1c1f4d012
gnu: armadillo: Update to 7.600.2. 
* gnu/packages/maths.scm (armadillo): Update to 7.600.2.
 2016-12-29 21:49:12 +01:00
Ricardo Wurmus c729d3dc0e
gnu: r-zoo: Update to 1.7-14. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 53941eb7a5
gnu: r-fastcluster: Update to 1.1.22. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3a181dc46e
gnu: r-plotly: Update to 4.5.6. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0. 
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 1a44753b95
gnu: r-r-utils: Update to 2.5.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 62350c0797
gnu: r-coda: Update to 0.19-1. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus 3607afbe4c
gnu: r-chron: Update to 2.3-48. 
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
 2016-12-29 21:49:11 +01:00
Ricardo Wurmus eaec5506ad
gnu: r-knitr: Update to 1.15.1. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus fd7810d323
gnu: r-bh: Update to 1.62.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus dd4ae2950a
gnu: r-svglite: Update to 1.2.0. 
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 48a87bbe3b
gnu: r-gdtools: Update to 0.1.3. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus b94b03b7fa
gnu: r-scales: Update to 0.4.1. 
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
 2016-12-29 21:49:10 +01:00
Ricardo Wurmus 421f7772b4
gnu: r-qtl: Update to 1.40-8. 
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.40-8.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 2a1c1b8074
gnu: r-hms: Update to 0.3. 
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 85455a08f4
gnu: r-git2r: Update to 0.17.0. 
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus abb6f0540e
gnu: r-ade4: Update to 1.7-5 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus db1b38af4e
gnu: r-xml: Update to 3.98-1.5. 
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 773a50114c
gnu: r-sparsem: Update to 1.74. 
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 76ce7c3767
gnu: r-data-table: Update to 1.10.0. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
 2016-12-29 21:49:09 +01:00
Ricardo Wurmus 58b93ad5d9
gnu: r-estimability: Update to 1.2. 
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus eebac90aa8
gnu: r-rcpp: Update to 0.12.8. 
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus 9cdf10f1c9
gnu: r-yaml: Update to 2.1.14. 
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus c616810720
gnu: r-htmlwidgets: Update to 0.8. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 0.8.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus f4ca28d911
gnu: r-curl: Update to 2.3. 
* gnu/packages/web.scm (r-curl): Update to 2.3.
 2016-12-29 21:49:08 +01:00
Ricardo Wurmus d3122150ca
gnu: r-servr: Update to 0.5. 
* gnu/packages/web.scm (r-servr): Update to 0.5.
 2016-12-29 21:49:08 +01:00
Alex Kost deb6276dda
Remove Emacs interface. 
* emacs/guix-about.el: Remove file.
* emacs/guix-backend.el: Likewise.
* emacs/guix-base.el: Likewise.
* emacs/guix-buffer.el: Likewise.
* emacs/guix-build-log.el: Likewise.
* emacs/guix-command.el: Likewise.
* emacs/guix-config.el.in: Likewise.
* emacs/guix-devel.el: Likewise.
* emacs/guix-entry.el: Likewise.
* emacs/guix-external.el: Likewise.
* emacs/guix-geiser.el: Likewise.
* emacs/guix-guile.el: Likewise.
* emacs/guix-help-vars.el: Likewise.
* emacs/guix-helper.scm.in: Likewise.
* emacs/guix-history.el: Likewise.
* emacs/guix-hydra-build.el: Likewise.
* emacs/guix-hydra-jobset.el: Likewise.
* emacs/guix-hydra.el: Likewise.
* emacs/guix-info.el: Likewise.
* emacs/guix-init.el: Likewise.
* emacs/guix-license.el: Likewise.
* emacs/guix-list.el: Likewise.
* emacs/guix-location.el: Likewise.
* emacs/guix-main.scm: Likewise.
* emacs/guix-messages.el: Likewise.
* emacs/guix-pcomplete.el: Likewise.
* emacs/guix-popup.el: Likewise.
* emacs/guix-prettify.el: Likewise.
* emacs/guix-profiles.el: Likewise.
* emacs/guix-read.el: Likewise.
* emacs/guix-ui-generation.el: Likewise.
* emacs/guix-ui-license.el: Likewise.
* emacs/guix-ui-location.el: Likewise.
* emacs/guix-ui-package.el: Likewise.
* emacs/guix-ui-system-generation.el: Likewise.
* emacs/guix-ui.el: Likewise.
* emacs/guix-utils.el: Likewise.
* emacs/local.mk: Likewise.
* doc/emacs.texi: Likewise.
* doc/guix.texi: Remove cross-references to Emacs nodes.
(Package Management): Mention 'emacs-guix' package.
* doc/contributing.texi (The Perfect Setup): Remove the reference.
* doc/htmlxref.cnf: Add 'emacs-guix' URL.
* Makefile.am: Remove Emacs stuff.
* configure.ac: Likewise.
* gnu/packages/package-management.scm (guix-0.12.0)[native-inputs]:
Remove "emacs".
[propagated-inputs]: Remove "geiser" and "emacs-magit-popup".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2016-12-29 23:40:24 +03:00
Ricardo Wurmus 94a6f20baf
gnu: r-colorspace: Update to 1.3-2. 
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
 2016-12-29 20:10:07 +01:00
Raoul Jean Pierre Bonnal 2fd261a37a
gnu: Add r-statmod. 
* gnu/packages/statistics.scm (r-statmod): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 294304169a
gnu: Add r-ggbeeswarm. 
* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 649d0c4841
gnu: Add r-sourcetools. 
* gnu/packages/statistics.scm (r-sourcetools): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 6ba279853c
gnu: Add r-beeswarm. 
* gnu/packages/statistics.scm (r-beeswarm): New variable.
 2016-12-29 19:54:59 +01:00
Raoul Jean Pierre Bonnal 069581351b
gnu: Add r-vipor. 
* gnu/packages/statistics.scm (r-vipor): New variable.
 2016-12-29 19:54:58 +01:00
Leo Famulari fc604eda3d
gnu: libpng-1.2: Update to 1.2.57 [security update]. 
* gnu/packages/image.scm (libpng-1.2): Update to 1.2.57.
[replacement]: New field.
 2016-12-29 13:41:43 -05:00
Leo Famulari 322e724bfa
gnu: libpng: Fix a null pointer dereference [fixes security issue]. 
* gnu/packages/patches/libpng-fix-null-ptr-dereference.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libpng)[replacement]: New field.
(libpng/fixed): New variable.
 2016-12-29 13:36:00 -05:00
Leo Famulari d835c6cc4b
gnu: mpd: Update to 0.19.21. 
* gnu/packages/mpd.scm (mpd): Update to 0.19.21.
 2016-12-29 11:30:31 -05:00
ng0 b954256337
gnu: rustc: Update to 1.14.0. 
* gnu/packages/rust.scm (rustc): Update to 1.14.0.
  %rust-bootstrap-binaries: Update to 1.13.0.

Signed-off-by: David Craven <david@craven.ch>
 2016-12-29 12:38:23 +01:00
Ricardo Wurmus e62e975b1f
gnu: mu: Avoid bootstrapping. 
* gnu/packages/mail.scm (mu)[arguments]: Rename "patch-configure.ac" to
"patch-configure" and only patch "configure" script; remove "autoreconf"
phase.
[native-inputs]: Remove "autoconf", "automake", "libtool", and
"texinfo".
 2016-12-29 09:20:08 +01:00
Ricardo Wurmus e7b9da2411
gnu: mu: Update to 0.9.18. 
* gnu/packages/mail.scm (mu): Update to 0.9.18.
 2016-12-29 08:58:57 +01:00
Tobias Geerinckx-Rice 43c0b9beaf
gnu: perl-zip: Update to 1.59. 
* gnu/packages/zip.scm (perl-zip): Update to 1.59.
 2016-12-29 05:37:01 +01:00
ng0 d5bbf806f3
gnu: Add python-trollius-redis. 
* gnu/packages/python.scm (python-trollius-redis, python2-trollius-redis): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 789de5e279
gnu: Add python-straight-plugin. 
* gnu/packages/python.scm (python-straight-plugin, python2-straight-plugins):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 a0e41de4ab
gnu: Add python-openid-teams. 
* gnu/packages/python.scm (python-openid-teams, python2-openid-teams): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:53 -05:00
ng0 03702173f1
gnu: Add python-openid-cla. 
* gnu/packages/python.scm (python-openid-cla, python2-openid-cla): New
variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 3ef00f5609
gnu: Add python2-openid. 
* gnu/packages/python.scm (python2-openid): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 0151a8df22
gnu: Add python-pygit2. 
* gnu/packages/python.scm (python-pygit2, python2-pygit2): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:52 -05:00
ng0 460fccd4b3
gnu: Add python-munch. 
* gnu/packages/python.scm (python-munch, python2-munch): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 9f21414de4
gnu: Add python-kitchen. 
* gnu/packages/python.scm (python-kitchen, python2-kitchen): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a2c7d88e74
gnu: Add python-flask-multistatic. 
* gnu/packages/python.scm (python-flask-multistatic, python2-flask-multistatic):
New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:51 -05:00
ng0 a7ad802be5
gnu: Add python-flask-wtf. 
* gnu/packages/python.scm (python-flask-wtf, python2-flask-wtf): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-28 22:41:45 -05:00
Tobias Geerinckx-Rice 50f7da2fc8
gnu: xonsh: Update to 0.5.1. 
* gnu/packages/shells.scm (xonsh): Update to 0.5.1.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 6a34f4ccc8
gnu: python-prompt-toolkit: Update to 1.0.9. 
* gnu/packages/python.scm (python-prompt-toolkit): Update to 1.0.9.
 2016-12-29 02:38:21 +01:00
Tobias Geerinckx-Rice 791ac6a68d
gnu: python-markdown: Update to 2.6.7. 
* gnu/packages/python.scm (python-markdown): Update to 2.6.7.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice 2ee57340f4
gnu: python-numexpr: Update to 2.6.1. 
* gnu/packages/python.scm (python-numexpr): Update to 2.6.1.
 2016-12-29 02:38:20 +01:00
Tobias Geerinckx-Rice ffb1e98d74
gnu: python-babel: Update to 2.3.4. 
* gnu/packages/python.scm (python-babel): Update to 2.3.4.
 2016-12-29 02:38:20 +01:00
Manolis Ragkousis 1d9c889881
gnu: glibc-hurd: Update to 2.23. 
* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 2.23.
 2016-12-28 21:14:20 +02:00
Marius Bakke 517c3207d3
gnu: rofi: Update to 1.3.0. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.3.0.
 2016-12-28 18:00:02 +01:00
Tobias Geerinckx-Rice 48dc9f3af3
gnu: znc: Update to 1.6.4. 
* gnu/packages/messaging.scm (znc): Update to 1.6.4.
 2016-12-28 05:14:05 +01:00
Nicolas Goaziou 4dbaa12f5d
gnu: wireshark: Update to 2.2.3. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.3.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:05:07 +01:00
Nicolas Goaziou d531b9fdfe
gnu: emacs-org: Update to 20161224. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161224.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 17:03:45 +01:00
Stefan Reichoer 9e6c7c425e
gnu: Add httpstat. 
* gnu/packages/networking.scm (httpstat): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:56:34 +01:00
Thomas Danckaert ea8450c82a
gnu: Add python-netcdf4. 
* gnu/packages/python.scm (python-netcdf4, python2-netcdf4): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-12-27 16:30:59 +01:00
Ricardo Wurmus 2c8d6c0be4
gnu: r-rcas: Update to 1.1.1. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.1.1.
[propagated-inputs]: Add plotrix.
 2016-12-27 14:50:55 +01:00
Leo Famulari 1194575b3c
gnu: python-pycrypto: Add TODO "removal" comment. 
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto): Add
comment.
 2016-12-26 19:51:54 -05:00
Leo Famulari 4de2a710a6
gnu: python-stem: Don't use python-pycrypto. 
Python-pycrypto is an optional dependency of python-stem. Python-pycrypto is
unmaintained [0] and contains an exploitable buffer overflow bug [1].

[0] https://github.com/dlitz/pycrypto/issues/173
[1] https://github.com/dlitz/pycrypto/issues/176

* gnu/packages/python.scm (python-stem, python2-stem)[propagated-inputs]: Remove
python-pycrypto.
 2016-12-26 19:51:49 -05:00
ng0 91426243f1
gnu: awesome: Update to 4.0. 
* gnu/packages/wm.scm (awesome): Update to 4.0.
[source]: Adjust URL.
[inputs]: Add xcb-util-xrm and libxkbcommon.
* gnu/packages/patches/awesome-reproducible-png.patch: Adjust patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-12-26 19:13:27 -05:00
Ben Woodcroft 9916ef8bb6
gnu: diamond: Update to 0.8.30. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.30.
 2016-12-27 09:18:05 +10:00
Leo Famulari c976b319fe
gnu: python-stem: Update to 1.5.3. 
* gnu/packages/python.scm (python-stem, python2-stem): Update to 1.5.3.
[source]: Update URL.
 2016-12-26 13:20:52 -05:00
Ben Woodcroft f1775db660
gnu: ruby-minitest: Update to 5.10.1. 
* gnu/packages/ruby.scm (ruby-minitest): Update to 5.10.1.
 2016-12-26 22:43:59 +10:00