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47599 Commits

Author SHA1 Message Date
Ricardo Wurmus 412153bbaf
gnu: r-bsgenome-celegans-ucsc-ce6: Permit substitution. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[arguments]:
Remove field.
 2019-09-11 23:59:28 +02:00
Ricardo Wurmus 86ced7b271
gnu: r-bsgenome-celegans-ucsc-ce6: Use bioconductor-uri. 
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[source]: Use
BIOCONDUCTOR-URI.
 2019-09-11 23:58:52 +02:00
Ricardo Wurmus 0f272518ec
gnu: python-ipython-documentation: Make reproducible. 
Fixes <https://bugs.gnu.org/37373/>.

* gnu/packages/python-xyz.scm (python-ipython)[arguments]: Add phase
"make-docs-reproducible" to remove timestamps from documentation generated in
dependent python-ipython-documentation package.
 2019-09-11 23:30:49 +02:00
Tobias Geerinckx-Rice 6f2f7bc88a
gnu: recode: Don't use NAME in source URI. 
* gnu/packages/textutils.scm (recode)[source]: Hard-code NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 5ca1900ba5
gnu: recode: Update to 3.7.5. 
* gnu/packages/textutils.scm (recode): Update to 3.7.5.
[native-inputs]: Use python@3 and python-cython@3.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 3b14974706
gnu: glslang: Use GIT-FILE-NAME. 
* gnu/packages/vulkan.scm (glslang)[source]: Use GIT-FILE-NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice 97e53dccc0
gnu: nghttp2: Don't use NAME in source URI. 
* gnu/packages/web.scm (nghttp2)[source]: Hard-code NAME.
 2019-09-11 22:56:04 +02:00
Tobias Geerinckx-Rice bfebc73a74
gnu: neofetch: Update to 6.1.0. 
* gnu/packages/admin.scm (neofetch): Update to 6.1.0.
 2019-09-11 22:56:04 +02:00
Rutger Helling e8cfac22c7
gnu: youtube-dl: Update to 2019.09.12. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.12.
 2019-09-11 21:03:02 +02:00
Tobias Geerinckx-Rice cf065aba1e
gnu: openssl: Update to 1.1.1d [fix CVE-2019-{1547,1549,1552,1563}]. 
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1d.
 2019-09-11 18:30:22 +02:00
Tobias Geerinckx-Rice b3f724b0a1
doc: Actually suggest ‘fc-cache -r’. 
A follow-up commit to 0cd3e99d64.

* doc/guix.texi (Application Setup): Fix my own typo.
 2019-09-11 18:05:38 +02:00
Joshua Branson 0cd3e99d64
doc: Run fc-cache verbosely and delete existing caches. 
* doc/guix.texi (Application Setup): Suggest ‘fc-cache -rv’ instead
of ‘fc-cache -f’.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-09-11 17:50:04 +02:00
宋文武 5df412bfe6
services: libvirtd: Use '/run/current-system/profile/bin' as PATH. 
This is a followup to ef640db2f5.

* gnu/services/virtualization.scm (libvirt-shepherd-service): Set
'#:environment-variables' for 'make-forkexec-constructor'.
 2019-09-11 23:12:02 +08:00
Tobias Geerinckx-Rice ae9b6dba19
gnu: foo2zjs: Update to 20190909. 
* gnu/packages/cups.scm (foo2zjs): Update to 20190909.
 2019-09-11 16:30:15 +02:00
Maxim Cournoyer d1c9684753
gnu: workrave: Correct the types of inputs used. 
* gnu/packages/gnome.scm (workrave)[propagated-inputs]: Move them all to...
[inputs]: ...here.
[native-inputs]: Move libxscrnsaver to the 'inputs' field.
 2019-09-11 22:07:13 +09:00
Maxim Cournoyer aa51d92cdb
gnu: workrave: Update to version 1.10.34. 
* gnu/packages/gnome.scm (workrave): Update version and hash strings.
[inputs]: Remove python-cheetah.
[native-inputs]: Add boost, python-3 and python-jinja2; remove the "bin"
output of glib.
 2019-09-11 22:07:12 +09:00
Ludovic Courtès 7dc4b2a728
gnu: emacs-debbugs: Update to 0.19. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.19.
 2019-09-11 14:44:15 +02:00
Ludovic Courtès 373546123e
gnu: emacs-smart-mode-line: Update to 2.13. 
* gnu/packages/emacs-xyz.scm (emacs-smart-mode-line): Update to 2.13.
 2019-09-11 14:43:57 +02:00
Ludovic Courtès 28123c01d1
gnu: guile-json: Use "mirror://savannah" URL. 
* gnu/packages/guile.scm (guile-json, guile-json-3): Change URL to
mirror://savannah.
 2019-09-11 14:08:34 +02:00
Ludovic Courtès 4e0299194d
gnu: guile-json: Update to 3.2.0. 
* gnu/packages/guile.scm (guile-json-3): Update to 3.2.0.
 2019-09-11 14:08:34 +02:00
Ludovic Courtès 9abc58d3ef
gnu: guile-gcrypt: Update to 0.2.0. 
* gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.2.0.
 2019-09-11 14:08:33 +02:00
宋文武 ef640db2f5
gnu: libvirt: Don't wrap with PATH. 
This reverts commit 903e051a71 to fix
<https://bugs.gnu.org/31365>.  The full path of the 'ip' command is already
embedded, and we want to search 'qemu' in PATH.

* gnu/packages/virtualization.scm (libvirt): Remove 'wrap-libvirtd phase.  Add
configure flags to run qemu as 'nobody:kvm'.
* gnu/services/virtualization.scm (libvirt-service-type): Add 'qemu' to the
system profile.
 2019-09-11 19:15:30 +08:00
Maxim Cournoyer e135ef9686
gnu: emacs-elpy: Update to 1.31.0. 
* gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.31.0.
 2019-09-11 18:10:21 +09:00
Maxim Cournoyer 296e1aea65
gnu: python-jedi: Update to 0.15.1 and re-enable tests. 
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.15.1; re-enable
tests.
 2019-09-11 18:10:20 +09:00
Maxim Cournoyer 4eb97c254e
gnu: python-parso: Run the test suite. 
* gnu/packages/python-xyz.scm (python-parso)[phases]: Replace the check phase.
 2019-09-11 18:10:20 +09:00
Maxim Cournoyer 1475094a45
gnu: python-parso: Update to 0.5.1. 
* gnu/packages/python-xyz.scm (python-parso): Update to 0.5.1.
 2019-09-11 18:10:20 +09:00
Steve Sprang 2316ce5187
gnu: Add openscad. 
* gnu/packages/engineering.scm (openscad): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2019-09-11 12:07:54 +03:00
Rutger Helling f8b7c35ad0
gnu: nftables: Update to 0.9.2. 
* gnu/packages/linux.scm (nftables): Update to 0.9.2.
 2019-09-11 10:21:55 +02:00
Rutger Helling c5e3f4f043
gnu: libnftnl: Update to 1.1.4. 
* gnu/packages/linux.scm (libnftnl): Update to 1.1.4.
 2019-09-11 10:21:55 +02:00
Tobias Geerinckx-Rice c1b79b3652
gnu: libsoup: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (libsoup)[source]: Hard-code NAME.
 2019-09-11 00:33:51 +02:00
Tobias Geerinckx-Rice b5b0fd2354
gnu: tracker: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (tracker)[source]: Hard-code NAME.
 2019-09-11 00:33:51 +02:00
Tobias Geerinckx-Rice 1d68eb321f
gnu: gvfs: Don't use NAME in source URI. 
* gnu/packages/gnome.scm (gvfs)[source]: Hard-code NAME.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice abab956bfc
gnu: umockdev: Update to 0.13.2. 
* gnu/packages/check.scm (umockdev): Update to 0.13.2.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 886534b4e0
gnu: yoshimi: Update to 1.6.0.1. 
* gnu/packages/music.scm (yoshimi): Update to 1.6.0.1.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 0edfe55332
gnu: perl-archive-zip: Update to 1.65. 
* gnu/packages/perl-compression.scm (perl-archive-zip): Update to 1.65.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 8e42b087f0
gnu: haveged: Use @acronym in description. 
* gnu/packages/linux.scm (havege)[description]: Substitute @acronym
for @dfn mark-up.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 6664ec0c8a
gnu: haveged: Use HTTPS home page. 
* gnu/packages/linux.scm (haveged)[home-page]: Use HTTPS.
 2019-09-11 00:33:50 +02:00
Tobias Geerinckx-Rice 389cae8b07
gnu: haveged: Update to 1.9.6. 
* gnu/packages/linux.scm (haveged): Update to 1.9.6.
 2019-09-11 00:33:50 +02:00
Brian Leung eb7ce870e0
gnu: emacs-helm-company: Update to 0.2.5. 
* gnu/packages/emacs-xyz.scm (emacs-helm-company): Update to 0.2.5.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Steve Sprang c3c0eda646
gnu: Add opencsg. 
* gnu/packages/graphics.scm (opencsg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Brian Leung 984cabc4a6
gnu: python-language-server: Update to 0.28.1. 
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.28.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-09-11 00:09:39 +02:00
Ludovic Courtès 489d16577e
gnu: cmake: Add package variant that knows about X.509 certificates. 
Fixes <https://bugs.gnu.org/37371>.

* gnu/packages/patches/cmake-curl-certificates.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/cmake.scm (cmake/fixed): New variable.
 2019-09-11 00:09:39 +02:00
Tobias Geerinckx-Rice 7e143375d3
gnu: links: Update to 2.20.1 [security fix for tor users]. 
* gnu/packages/web-browsers.scm (links): Update to 2.20.1.
 2019-09-10 23:01:25 +02:00
Tobias Geerinckx-Rice 08dd5f673d
gnu: strongswan: Update to 5.8.1. 
* gnu/packages/networking.scm (strongswan): Update to 5.8.1.
 2019-09-10 21:51:11 +02:00
Tobias Geerinckx-Rice db05b57205
gnu: youtube-dl: Update to 2019.09.01. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.01.
 2019-09-10 21:38:55 +02:00
Tobias Geerinckx-Rice 97e036cac1
gnu: i3blocks: Update to 1.5. 
* gnu/packages/wm.scm (i3blocks): Update to 1.5.
[source]: Use git tag.
[arguments]: Remove entirely.
 2019-09-10 21:37:19 +02:00
Tobias Geerinckx-Rice 07c0110eac
gnu: weechat: Update to 2.6. 
* gnu/packages/irc.scm (weechat): Update to 2.6.
[source]: Remove obsolete patch.
[inputs]: Replace python-2 with python(@3).
[arguments]: Remove ‘wrap’ phase.
* gnu/packages/patches/weechat-python.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-09-10 21:37:19 +02:00
Hartmut Goebel 4eb69bf0d3
import: KDE updater finds packages even in sub-directory. 
Fixes <http://issues.guix.gnu.org/issue/30345> and
finally fixes <http://issues.guix.gnu.org/issue/25020>.

Formerly packages living in a path like
/stable/frameworks/5.60/portingAids/kross-5.60.0.tar.xz
have not been found.

* guix/import/kde.scm (uri->kde-path-pattern): New procedure.
  (latest-kde-release): Use pattern to search for file.
 2019-09-10 19:04:06 +02:00
Hartmut Goebel d1dce0c363
upstream: Move KDE updater into a separate module. 
As it was done for (guix import gnome).

* guix/import/kde.scm: New file.
* Makefile.am (MODULES): Add it.
* guix/gnu-maintenance.scm (%kde-updater) (%kde-file-list-uri)
  (download.kde.org-files) (latest-kde-release): Remove.
 2019-09-10 19:04:06 +02:00
Hartmut Goebel 33f53947aa
gnu-maintenance: KDE updater no longer relies on FTP access. 
Fetch the ls-lR.bz2 file list for download.kde.org, convert it into a list of
file paths and cache the list.

* guix/gnu-maintenance.scm (%kde-file-list-uri): New variable.
  (download.kde.org-files): New procedure.
  (latest-kde-release): Change to use DOWNLOAD.KDE.ORG-FILES and search
  for files in this list.
 2019-09-10 19:04:06 +02:00