Commit Graph

11256 Commits

Author SHA1 Message Date
Efraim Flashner a777535cd7
gnu: aria2: Update to 1.27.1.
* gnu/packages/bittorrent.scm (aria2): Update to 1.27.1.
2016-09-27 14:52:48 +03:00
Ben J Woodcroft 99caa6f75f
gnu: python-plastid: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-plastid, python2-plastid): Update to
1.4.6.
[propagated-inputs]: Add python-termcolor.
2016-09-27 20:07:12 +10:00
Ben J Woodcroft 67f66812f5
gnu: Add python-termcolor.
* gnu/packages/python.scm (python-termcolor, python2-termcolor): New
variables.
2016-09-27 20:07:02 +10:00
Marius Bakke f536dce522
gnu: python-pysam: Enable tests.
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Change from
PyPi to source archive due to missing test data.
[arguments]: Add check phase after install.
[native-inputs]: Add python-nose, samtools and bcftools.
2016-09-27 20:06:00 +10:00
Marius Bakke dff26b2363
gnu: python-pysam: Delete bundled htslib.
* gnu/packages/bioinformatics.scm (python-pysam)[source]: Add snippet
to delete htslib.
[arguments]: Add htslib flags in 'set-flags phase.
[propagated-inputs]: New field. Add htslib.
2016-09-27 20:06:00 +10:00
Marius Bakke 397d463a12
gnu: python-pysam: Use 'modify-phases'.
* gnu/packages/bioinformatics.scm (python-pysam)[arguments]: Use
'modify-phases'.
2016-09-27 20:06:00 +10:00
Marius Bakke bdc7be59eb
gnu: Add bcftools.
* gnu/packages/bioinformatics.scm (bcftools): New variable.
2016-09-27 20:06:00 +10:00
Marius Bakke e301bfc886
gnu: python2-pbcore: Update to 1.2.10.
* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
2016-09-27 20:06:00 +10:00
Marius Bakke c2efe1aea8
gnu: Add python-pyxb.
* gnu/packages/xml.scm (python-pyxb, python2-pyxb): New variables.
2016-09-27 20:06:00 +10:00
Marius Bakke fd49eb213f
gnu: python-pysam: Update to 0.9.1.4.
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): Update
to 0.9.1.4.
2016-09-27 20:05:57 +10:00
Ludovic Courtès 3c185b24f5
Add missing exports.
Reported by Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
at <https://lists.gnu.org/archive/html/guix-devel/2016-09/msg01686.html>.

* gnu/system/file-systems.scm (%tty-gid): Export.
* guix/build-system/python.scm (default-python, default-python2):
Export.
2016-09-27 11:22:56 +02:00
Leo Famulari 9ad0965228
gnu: openssl-next: Update to 1.1.0b [fixes CVE-2016-6309].
* gnu/packages/tls.scm (openssl-next): Update to 1.1.0b.
2016-09-26 17:09:08 -04:00
Leo Famulari 8be42e5daf
gnu: openssl: Update replacement to 1.0.2j [fixes CVE-2016-7052].
* gnu/packages/tls.scm (openssl): Update replacement to 1.0.2j.
(openssl-1.0.2i): Replace with...
(openssl-1.0.2j): ... new variable.
2016-09-26 17:09:05 -04:00
Danny Milosavljevic 58478cc1cb
gnu: libftdi: Propagate the libusb input.
* gnu/packages/libftdi.scm (libftdi): Change libusb from an input to a
propagated-input.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-26 14:30:37 -04:00
Ricardo Wurmus 675d7ae26f
gnu: ncbi-vdb: Only build on i686 and x86_64.
* gnu/packages/bioinformatics.scm (ncbi-vdb)[supported-systems]: Only
build on i686 and x86_64.
[arguments]: Add mandatory "-msse2" flag to CFLAGS.
2016-09-26 14:30:59 +02:00
Ricardo Wurmus bc600b80a2
gnu: ghc-pandoc: Update to 1.17.2.
* gnu/packages/haskell.scm (ghc-pandoc): Update to 1.17.2.
2016-09-26 14:30:59 +02:00
Ricardo Wurmus 5a502d9abd
gnu: ghc-texmath: Update to 0.8.6.5.
* gnu/packages/haskell.scm (ghc-texmath): Update to 0.8.6.5.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 2e9b1276b7
gnu: ghc-cmark: Update to 0.5.3.1.
* gnu/packages/haskell.scm (ghc-cmark): Update to 0.5.3.1.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 8f1e2dca55
gnu: ghc-highlighting-kate: Update to 0.6.3.
* gnu/packages/haskell.scm (ghc-highlighting-kate): Update to 0.6.3.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus ae87e4fcde
gnu: ghc-pandoc-types: Update to 1.16.1.1.
* gnu/packages/haskell.scm (ghc-pandoc-types): Update to 1.16.1.1.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 1da48e4302
gnu: ghc-tagsoup: Update to 0.14.
* gnu/packages/haskell.scm (ghc-tagsoup): Update to 0.14.
2016-09-26 14:30:58 +02:00
Ricardo Wurmus 1a545a1e7c
gnu: tbb: Fail on test errors.
* gnu/packages/tbb.scm (tbb)[arguments]: Add phase
"fail-on-test-errors".
2016-09-26 14:30:58 +02:00
Ricardo Wurmus ba4529c4f7
gnu: ghc-tls: Update to 1.3.8.
* gnu/packages/haskell.scm (ghc-tls): Update to 1.3.8.
2016-09-26 14:30:57 +02:00
Ricardo Wurmus 7f5ca399bf
gnu: tbb: Use modify-phases syntax.
* gnu/packages/tbb.scm (tbb)[arguments]: Use "modify-phases" syntax.
2016-09-26 14:30:57 +02:00
Ben Woodcroft af8de20386
gnu: vsearch: Update to 2.1.1.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.1.
2016-09-26 20:35:32 +10:00
Ricardo Wurmus 204adc3017
gnu: azr3: Fix libsigc++ build errors.
* gnu/packages/audio.scm (azr3)[arguments]: Add "-std=gnu++11" flag.
[source]: Add patch.
* gnu/packages/patches/azr3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-26 10:47:58 +02:00
Ricardo Wurmus 3ef08dceb3
gnu: qtractor: Update to 0.7.9.
* gnu/packages/music.scm (qtractor): Update to 0.7.9.
2016-09-26 08:16:13 +02:00
Ricardo Wurmus f3cfe4515a
gnu: Add r-txdb-hsapiens-ucsc-hg19-knowngene.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene):
  New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 684f29bd2e
gnu: Add r-grohmm.
* gnu/packages/bioinformatics.scm (r-grohmm): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus 7f903d7300
gnu: Add r-systempiper.
* gnu/packages/bioinformatics.scm (r-systempiper): New variable.
2016-09-26 07:47:55 +02:00
Ricardo Wurmus cb99d457f0
gnu: Add r-shortread.
* gnu/packages/bioinformatics.scm (r-shortread): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 89f40c5e4e
gnu: Add r-gostats.
* gnu/packages/bioinformatics.scm (r-gostats): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus 1a1931f7e0
gnu: Add r-category.
* gnu/packages/bioinformatics.scm (r-category): New variable.
2016-09-26 07:47:54 +02:00
Ricardo Wurmus ad740ff818
gnu: Add r-gseabase.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
2016-09-26 07:47:53 +02:00
Ricardo Wurmus cd9e7dc7ff
gnu: Add r-rbgl.
* gnu/packages/bioinformatics.scm (r-rbgl): New variable.
2016-09-26 03:25:23 +02:00
Ricardo Wurmus e816377374
gnu: Add r-annotationforge.
* gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
2016-09-26 03:25:17 +02:00
Ricardo Wurmus 9e330278ee
gnu: Add r-batchjobs.
* gnu/packages/statistics.scm (r-batchjobs): New variable.
2016-09-26 03:25:11 +02:00
Ricardo Wurmus dc4fb16d25
gnu: Add r-fail.
* gnu/packages/statistics.scm (r-fail): New variable.
2016-09-26 03:25:06 +02:00
Ricardo Wurmus cd26ec3bbf
gnu: Add r-bbmisc.
* gnu/packages/statistics.scm (r-bbmisc): New variable.
2016-09-26 03:25:02 +02:00
Ricardo Wurmus 929d4aaea1
gnu: Add r-checkmate.
* gnu/packages/statistics.scm (r-checkmate): New variable.
2016-09-26 03:24:59 +02:00
Ricardo Wurmus 0d90462fa3
gnu: Add r-backports.
* gnu/packages/statistics.scm (r-backports): New variable.
2016-09-26 03:24:55 +02:00
Ricardo Wurmus 8e1bfc7e8c
gnu: Add r-sendmailr.
* gnu/packages/statistics.scm (r-sendmailr): New variable.
2016-09-26 03:24:50 +02:00
Ricardo Wurmus 0c77fd50f8
gnu: Add r-pheatmap.
* gnu/packages/statistics.scm (r-pheatmap): New variable.
2016-09-26 03:24:44 +02:00
Ricardo Wurmus 092197a548
gnu: Add r-matrix.
* gnu/packages/statistics.scm (r-matrix): New variable.
2016-09-26 03:21:32 +02:00
Ricardo Wurmus ad34f0ac96
gnu: Add r-deseq2.
* gnu/packages/bioinformatics.scm (r-deseq2): New variable.
2016-09-26 03:21:27 +02:00
Ricardo Wurmus 2301fd3e4d
gnu: Add r-genefilter.
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
2016-09-26 03:21:19 +02:00
Ricardo Wurmus 2d21d44dbd
gnu: Add r-hmisc.
* gnu/packages/statistics.scm (r-hmisc): New variable.
2016-09-26 03:21:13 +02:00
Ricardo Wurmus 07a664cde0
gnu: Add r-geneplotter.
* gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
2016-09-26 03:21:07 +02:00
Ricardo Wurmus 8c6de58849
gnu: Add r-annotate.
* gnu/packages/bioinformatics.scm (r-annotate): New variable.
2016-09-26 03:20:59 +02:00
Ricardo Wurmus 2213730c5b
gnu: Add r-rpart.
* gnu/packages/statistics.scm (r-rpart): New variable.
2016-09-26 03:20:52 +02:00
Ricardo Wurmus 356c6d61a6
gnu: Add r-rjson.
* gnu/packages/web.scm (r-rjson): New variable.
2016-09-26 03:20:44 +02:00
Ricardo Wurmus bbed0ab6b4
gnu: Add r-hwriter.
* gnu/packages/web.scm (r-hwriter): New variable.
2016-09-26 03:20:19 +02:00
Ricardo Wurmus 57a31efb4b
gnu: tcc: Disable build on MIPS.
* gnu/packages/c.scm (tcc)[supported-systems]: Disable build on
mips64el.
2016-09-26 03:01:06 +02:00
Arun Isaac 9311722703
gnu: Add optipng.
* gnu/packages/image.scm (optipng): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-25 16:53:00 -04:00
Ludovic Courtès 5babe521c8
system: Don't emit a GRUB 'search' command when passed a GRUB file name.
Reported by Tomáš Čech <tcech@suse.com>
at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>.

* gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE
is a string that does not denote an absolute file name.
2016-09-26 00:18:39 +09:00
Ricardo Wurmus 7acd71d13d
gnu: epiphany: Drop NSS and libwnck.
These dependencies were dropped in Epiphany 3.21.x.

* gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 9f58932ecc
gnu: epiphany: Update to 3.22.0.
* gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
2016-09-25 13:04:00 +02:00
Ricardo Wurmus 58d04dbaf0
gnu: python-virtualenv: Update to 15.0.3.
* gnu/packages/python.scm (python-virtualenv): Update to 15.0.3.
[arguments]: Disable failing test.
2016-09-25 13:04:00 +02:00
Mark H Weaver 1535c0a6b6
gnu: linux-libre: Update to 4.7.5.
* gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
2016-09-25 03:57:57 -04:00
Mark H Weaver dfcce0cc8d
gnu: linux-libre@4.4: Update to 4.4.22.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
2016-09-25 03:55:37 -04:00
John Darrington 94c5dc8c03
gnu: Add pam-krb5
* gnu/packages/admin.scm (pam-krb5): New variable.
2016-09-25 06:40:29 +02:00
Efraim Flashner a8f3d49280
gnu: privoxy: Update to 3.0.26.
* gnu/packages/tor.scm (privoxy): Update to 3.0.26.
[home-page]: Use https.
2016-09-24 23:09:14 +03:00
Efraim Flashner 0ab57b0d04
gnu: tor: Update to 0.2.8.8.
* gnu/packages/tor.scm (tor): Update to 0.2.8.8.
[source]: Update source url.
[home-page]: Use https.
2016-09-24 22:27:16 +03:00
Carlos Sánchez de La Lama 0f65f54ebd
system: grub.cfg uses correct file names when store is not in root partition.
Fixes <http://bugs.gnu.org/24346>.
Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama).

* guix/scripts/system.scm (previous-grub-entries): Get the initrd file
name from PARAMS.
* gnu/system.scm (operating-system-grub.cfg): Use
'operating-system-initrd-file' to retrieve the initrd file name.
* gnu/system/grub.scm (strip-mount-point): New procedure.
(grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for
LINUX and INITRD.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-09-24 17:48:13 +09:00
Ludovic Courtès d7b342d815
system: 'read-boot-parameters' reads the 'initrd' parameter.
* gnu/system.scm (<boot-parameters>)[initrd]: New field.
(read-boot-parameters): Read the 'initrd' element and fill in the
'initrd' field of the result.
2016-09-24 17:48:12 +09:00
ng0 6fc48c2ee2
gnu: Add gforth.
* gnu/packages/gforth.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
2016-09-24 14:07:12 +08:00
Rene Saavedra 54021cd8c6
gnu: Add gnome-calculator.
* gnu/packages/gnome.scm (gnome-calculator): New variable.

Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2016-09-24 00:51:52 -04:00
Erik Edrosa 8058880017
gnu: Add cmark.
* gnu/packages/markdown.scm (cmark): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 20:56:51 -04:00
ng0 93666cf783
gnu: Add enet.
* gnu/packages/networking.scm (enet): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:18:10 -04:00
Danny Milosavljevic 03ddad84ba
gnu: flashrom: Update to 0.9.9
* gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9.
[source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch".
[aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags.
* gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 19:03:19 -04:00
ng0 0f5de84e98
gnu: Add nickle.
* gnu/packages/nickle.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 18:54:24 -04:00
Efraim Flashner 047cd01d11
gnu: orpheus: Use 'modify-phases'.
* gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases'
syntax.
2016-09-23 17:38:25 +03:00
Efraim Flashner 5bd6270211
gnu: orpheus: Fix build on mips64el.
* gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass
"--host=mips64el-unknown-linux-gnu" to ./configure.
2016-09-23 17:38:24 +03:00
Nicolas Goaziou 236d522b80
gnu: giac-xcas: Update to 1.2.2-81.
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-23 09:57:20 -04:00
Ricardo Wurmus 8f309571d3
gnu: r-curl: Respect CURL_CA_BUNDLE variable.
* gnu/packages/web.scm (r-curl)[arguments]: Add phase
"allow-CURL_CA_BUNDLE".
2016-09-23 13:13:41 +02:00
Ricardo Wurmus 646a84338d
gnu: sra-tools: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
2016-09-23 11:46:53 +02:00
Ricardo Wurmus 40974c933e
gnu: ncbi-vdb: Update to 2.7.0.
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
2016-09-23 11:46:26 +02:00
Ricardo Wurmus 48b419ebd6
gnu: ngs-sdk: Update to 1.2.5.
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
2016-09-23 11:45:24 +02:00
Ricardo Wurmus 4781820147
gnu: randomjungle: Only build on x86_64 and i686.
* gnu/packages/machine-learning.scm (randomjungle)[supported-systems]:
Only build on x86_64 and i686.
2016-09-23 08:23:51 +02:00
Efraim Flashner fc3b2cbb04
gnu: retroarch: Update to 1.3.6.
* gnu/packages/games.scm (retroarch): Update to 1.3.6.
2016-09-23 09:02:03 +03:00
Ricardo Wurmus 5989d4eaac
gnu: synfig: Fix isnan error.
* gnu/packages/animation.scm (synfig)[arguments]: Add build phase to
replace "::isnan" with "std::isnan".
2016-09-23 07:45:16 +02:00
Eric Bavier 56f33f3fd5
gnu: ccache: Upgrade to 3.3.1.
* gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1.
[description]: Adjust supported languages.
2016-09-22 23:56:17 -05:00
Eric Bavier bd368c7174
gnu: ccache: Use modify-phases.
* gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
2016-09-22 23:43:20 -05:00
Eric Bavier 1a0ae573c7
gnu: boost: Add -j for build.
* gnu/packages/boost.scm (boost)[arguments]: Add -j flag for build
phase.
2016-09-22 22:34:04 -05:00
Eric Bavier 6941965526
gnu: boost: Upgrade to 1.61.0.
* gnu/packages/boost.scm (boost): Upgrade to 1.61.0
* gnu/packages/databases.scm (mysql)[arguments]: Compute boost minor
version for substitution.
2016-09-22 22:33:37 -05:00
ng0 71b611bc34
gnu: Add ghc-transformers-0.4.2.0.
* gnu/packages/haskell.scm (ghc-transformers-0.4.2.0): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:01 -04:00
ng0 10a03d6665
gnu: Add ghc-system-fileio.
* gnu/packages/haskell.scm (ghc-system-fileio): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 23feb6e4fb
gnu: Add ghc-system-filepath.
* gnu/packages/haskell.scm (ghc-system-filepath): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 58c85b1f82
gnu: Add ghc-options.
* gnu/packages/haskell.scm (ghc-options): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 c92d944c1e
gnu: Add ghc-chell-quickcheck.
* gnu/packages/haskell.scm (ghc-chell-quickcheck): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:10:00 -04:00
ng0 475d366866
gnu: Add ghc-chell-quickcheck-bootstrap.
* gnu/packages/haskell.scm (ghc-chell-quickcheck-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 8ea94489fd
gnu: Add ghc-chell.
* gnu/packages/haskell.scm (ghc-chell): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 7e06c4aa98
gnu: Add ghc-options-bootstrap.
* gnu/packages/haskell.scm (ghc-options-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 25b3bdb5ff
gnu: Add ghc-shelly.
* gnu/packages/haskell.scm (ghc-shelly): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:59 -04:00
ng0 3f7aa1029b
gnu: Add ghc-system-fileio-bootstrap.
* gnu/packages/haskell.scm (ghc-system-fileio-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 ddd5955b1e
gnu: Add ghc-system-filepath-bootstrap.
* gnu/packages/haskell.scm (ghc-system-filepath-bootstrap): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 2b41f4afc1
gnu: Add ghc-lifted-async.
* gnu/packages/haskell.scm (ghc-lifted-async): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:58 -04:00
ng0 6aab9ba6d4
gnu: Add ghc-constraints.
* gnu/packages/haskell.scm (ghc-constraints): New variable.
2016-09-22 20:09:58 -04:00
ng0 e7e2f03c8f
gnu: Add ghc-array.
* gnu/packages/haskell.scm (ghc-array): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 3db882776b
gnu: Add ghc-graphviz.
* gnu/packages/haskell.scm (ghc-graphviz): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 d4cca6b0ae
gnu: Add ghc-fgl-arbitrary.
* gnu/packages/haskell.scm (ghc-fgl-arbitrary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 ce242fd05e
gnu: ghc-fgl: Update to 5.5.3.0.
* gnu/packages/haskell.scm (ghc-fgl): Update to 5.5.3.0.
[inputs]: Add ghc-hspec and ghc-quickcheck.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:57 -04:00
ng0 6e0741f739
gnu: Add ghc-wl-pprint-text.
* gnu/packages/haskell.scm (ghc-wl-pprint-text): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 3b281f5b8d
gnu: Add ghc-process.
* gnu/packages/haskell.scm (ghc-process): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 4fec5cdbf4
gnu: Add ghc-directory.
* gnu/packages/haskell.scm (ghc-directory): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:56 -04:00
ng0 e1a56bb258
gnu: Add ghc-colour.
* gnu/packages/haskell.scm (ghc-colour): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 1d9db656c9
gnu: Add ghc-bytestring.
* gnu/packages/haskell.scm (ghc-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 41167bd255
gnu: Add ghc-monads-tf.
* gnu/packages/haskell.scm (ghc-monads-tf): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 d52ca22ac3
gnu: Add ghc-patience.
* gnu/packages/haskell.scm (ghc-patience): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:55 -04:00
ng0 027b79762a
gnu: Add ghc-findbin.
* gnu/packages/haskell.scm (ghc-findbin): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 54c37341d1
gnu: Add ghc-transformers.
* gnu/packages/haskell.scm (ghc-transformers): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 f827033102
gnu: Add ghc-tar.
* gnu/packages/haskell.scm (ghc-tar): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 a71f861752
gnu: Add ghc-bytestring-handle.
* gnu/packages/haskell.scm (ghc-bytestring-handle): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:54 -04:00
ng0 e9e519be76
gnu: Add ghc-sandi.
* gnu/packages/haskell.scm (ghc-sandi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 ab12bd3a04
gnu: Add ghc-tasty-th.
* gnu/packages/haskell.scm (ghc-tasty-th): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 fe3c62c7d5
gnu: Add ghc-regex-compat-tdfa.
* gnu/packages/haskell.scm (ghc-regex-compat-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 7e444dba6e
gnu: Add ghc-regex-tdfa.
* gnu/packages/haskell.scm (ghc-regex-tdfa): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:53 -04:00
ng0 d58dc851f9
gnu: Add ghc-regex-applicative.
* gnu/packages/haskell.scm (ghc-regex-applicative): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 1a0dbf0ded
gnu: Add ghc-haskeline.
* gnu/packages/haskell.scm (ghc-haskeline): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 7c14128dd0
gnu: Add ghc-data-ordlist.
* gnu/packages/haskell.scm (ghc-data-ordlist): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 c763b8ae89
gnu: Add ghc-cryptohash.
* gnu/packages/haskell.scm (ghc-cryptohash): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:52 -04:00
ng0 eddc69241b
gnu: ghc-cryptonite: Update to 0.19.
* gnu/packages/haskell.scm (ghc-cryptonite): Update to 0.19.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 301e762ad1
gnu: Add ghc-binary.
* gnu/packages/haskell.scm (ghc-binary): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
ng0 cc5e16a764
gnu: Add ghc-base16-bytestring.
* gnu/packages/haskell.scm (ghc-base16-bytestring): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 20:09:51 -04:00
Leo Famulari 67fa6ab5bb
gnu: imagemagick: Update to 6.9.5-10.
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-10.
2016-09-22 20:09:51 -04:00
Efraim Flashner 5895f193c9
gnu: reptyr: Remove mips64el support.
* gnu/packages/screen.scm (reptyr)[supported-systems]: New field, remove
support for mips64el.
2016-09-22 22:42:47 +03:00
Efraim Flashner cda5e76f51
gnu: python2-django: Fix typo in native-inputs.
* gnu/packages/django.scm (python2-django)[native-inputs]: Inherit from
python-django's native-inputs, not its inputs.
2016-09-22 22:42:47 +03:00
Efraim Flashner 7adc698f69
gnu: python-fake-factory: Update to 0.7.2.
* gnu/packages/python.scm (python-fake-factory): Update to 0.7.2.
[arguments]: Remove phase disabling failing test.
[home-page]: Use https.
2016-09-22 22:42:46 +03:00
Efraim Flashner 0dbb7ac2df
gnu: plink: Set endian-ness on more architectures.
* gnu/packages/patches/plink-endian-detection.patch: New file.
* gnu/packages/bioinformatics.scm (plink)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Register it.
2016-09-22 22:42:37 +03:00
John Darrington c788c5feb1
gnu: Add ytalk
* gnu/packages/messaging.scm (ytalk): New variable.
2016-09-22 21:07:33 +02:00
Leo Famulari 163d93a6bd
gnu: openssl-next: Update to 1.1.0a [security fixes].
Fixes CVE-2016-{6304,6305,6307,6308}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0a.
[replacement]: New field.
2016-09-22 13:45:54 -04:00
Leo Famulari 50f701d4f9
gnu: openssl: Replace with 1.0.2i [security fixes].
Fixes CVE-2016-{2177,2178,2179,2180,2181,2182,2183,6302,6303,6304,6306,6308}.

* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2i): New variable.
2016-09-22 13:45:54 -04:00
Efraim Flashner 62d00095c2
gnu: prank: Allow building on 32-bit machines.
* gnu/packages/bioinformatics.scm (prank)[arguments]: Add a phase
removing the '-m64' compiler flag.
2016-09-22 19:21:16 +03:00
Mark H Weaver a143e1b877
gnu: webkitgtk: Update to 2.14.0.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.14.0.
2016-09-22 11:59:58 -04:00
Efraim Flashner b8367c0090
gnu: offlineimap: Update to 7.0.7.
* gnu/packages/mail.scm (offlineimap): Update to 7.0.7.
2016-09-22 11:19:11 +03:00
Ben Woodcroft 951da521a9
gnu: diamond: Update to 0.8.22.
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.22.
2016-09-22 16:36:00 +10:00
ng0 c5776c87bb
gnu: perl-io-socket-ssl: Update to 2.038.
* gnu/packages/web.scm (perl-io-socket-ssl): Update to 2.038.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-22 01:44:50 -04:00
Leo Famulari 1df00601b2
gnu: irssi: Update to 0.8.20 [fixes CVE-2016-{7044,7045}].
* gnu/packages/irc.scm (irssi): Update to 0.8.20.
2016-09-22 00:38:13 -04:00
Ricardo Wurmus 39162ee49b
gnu: extempore: Only build on x86_64.
* gnu/packages/algebra.scm (kiss-fft-for-extempore)[supported-systems]:
Only build on x86_64.
* gnu/packages/gl.scm (nanovg-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/image.scm (stb-image-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/llvm.scm (llvm-for-extempore)[supported-systems]:
Likewise.
* gnu/packages/music.scm (portmidi-for-extempore)[supported-systems]:
Likewise.
(extempore)[supported-systems]: Likewise.
2016-09-21 21:47:56 +02:00
Ricardo Wurmus b78891b012
gnu: r-rmarkdown: Ensure temporary files can be deleted.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Ricardo Wurmus 3f1c722ec7
gnu: r-htmltools: Ensure temporary files can be deleted.
* gnu/packages/web.scm (r-htmltools)[arguments]: Add phase
"copy-files-without-mode".
2016-09-21 21:38:39 +02:00
Efraim Flashner 538c0e3b69
gnu: openlibm: Remove support for mips.
* gnu/packages/maths.scm (openlibm)[supported-systems]: New field,
remove support for mips64el.
2016-09-21 22:36:52 +03:00
Efraim Flashner 6e8faf7794
gnu: jellyfish: Limit to x86_64.
* gnu/packages/bioinformatics.scm (jellyfish)[supported-systems}: New
field, limit support to x86_64.
2016-09-21 22:36:52 +03:00
ng0 f7fe5f7a3e
gnu: femtolisp: Remove custom "patch-makefile" phase.
* gnu/packages/lisp.scm (femtolisp)[arguments]: Remove
"patch-makefile" phase; specify test target; build "release"
target instead of "default".
2016-09-21 21:28:52 +02:00
Andreas Enge 171091a874
gnu: lm-sensors: Update to 3.4.0.
* gnu/packages/linux.scm (lm-sensors): Update to 3.4.0.
2016-09-21 19:20:22 +02:00
Ben Woodcroft 79558df220
gnu: vsearch: Update to 2.1.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.1.0.
2016-09-21 18:44:22 +10:00
Ben Woodcroft 375f224b68
gnu: python-click: Use 'pypi-uri'.
* gnu/packages/python.scm (python-click, python2-click)[source]: Use
'pypi-uri'.
2016-09-21 11:58:39 +10:00
Ben Woodcroft e2ab5a0904
gnu: python-click: Hardlink path to 'locale'.
* gnu/packages/python.scm (python-click, python2-click)[arguments]: New
field.
2016-09-21 11:54:15 +10:00
Tobias Geerinckx-Rice f75bb2c3f2
gnu: simple-scan: Update to 3.22.0.1.
* gnu/packages/gnome.scm (simple-scan): Update to 3.22.0.1.
2016-09-21 01:15:57 +02:00
Alex Vong 8824da4c8b
gnu: vlc: Use liba52.
* gnu/packages/video.scm (vlc)[inputs]: Add liba52.
[arguments]: Remove "--disable-a52" from #:configure-flags.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 15:54:18 -04:00
Efraim Flashner c84253f757
gnu: chez-scheme: Remove arm support.
* gnu/packages/scheme.scm (chez-scheme)[supported-systems]: Remove arm.
2016-09-20 22:04:15 +03:00
doncatnip 22037a327a
gnu: awesome: Update to 3.5.9.
* gnu/packages/wm.scm (awesome): Update to 3.5.9.
[inputs]: Add gobject-introspection, lua-lgi, cairo. Use latest available lua.
[arguments]: Set lua search paths. Add cairo to LD_LIBRARY_PATH. Wrap binary in
respect to those paths plus GI_TYPELIB_PATH.
2016-09-20 14:58:33 -04:00
doncatnip 03d8505f14
gnu: lua: Add lua-lgi.
* gnu/packages/lua.scm (lua-lgi): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:32 -04:00
doncatnip c0d47cadea
gnu: lua: Use MYCFLAGS instead of CFLAGS.
* gnu/packages/lua.scm (lua)[arguments]: Use MYCFLAGS instead of
CFLAGS and remove conflicting -DLUA_USE_POSIX since -DLUA_USE_LINUX
is passed implicitly for build target "linux".

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-20 14:58:29 -04:00
Efraim Flashner e6d58734b6
gnu: chess: Update to 6.2.3.
* gnu/packages/games.scm (chess): Update to 6.2.3.
2016-09-20 21:41:14 +03:00
Dylan Jeffers b04a52a6ff
gnu: Add python-requests-oauthlib.
* gnu/packages/python.scm (python-requests-oauthlib,
python2-requests-oauthlib): New variables.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-20 21:27:56 +03:00
John Darrington be86b7adbc
gnu: Add bind
* gnu/packags/dns.scm (bind): New variable, (bind-utils): Remove.
2016-09-20 18:55:52 +02:00
Ludovic Courtès e465d9e190
ui: Do not shadow '_' where it's used as a literal syntax match.
Fixes compilation with Guile 2.1.
Reported by Mu Lei.

* guix/ui.scm (report-load-error)
(warn-about-load-error, read/eval-package-expression): Use 'rest'
instead of '_' as the pattern variable name.
* gnu/packages.scm (%find-package): Likewise.
* guix/scripts/build.scm (transform-package-inputs): Likewise.
* guix/scripts/hash.scm (guix-hash): Likewise.
* guix/scripts/import/gnu.scm (%options, guix-import-gnu): Likewise.
* guix/scripts/import/nix.scm (guix-import-nix): Likewise.
* guix/scripts/offload.scm (build-machines): Likewise.
* guix/scripts/refresh.scm (%options): Likewise.
* guix/scripts/substitute.scm (narinfo-signature->canonical-sexp):
Likewise.
2016-09-20 23:22:42 +09:00
Ludovic Courtès 232ccbefc0
services: Use 'source-module-closure' for (gnu build activation).
* gnu/services.scm (activation-script)[%modules]: Remove.
Use 'source-module-closure' instead.
2016-09-20 22:42:11 +09:00
Efraim Flashner 92330ba90d
gnu: efl: Remove hardcoding pulseaudio and libsndfile.
* gnu/packages/enlightenment.scm (efl)[arguments]: Remove custom phase
to hardlink to the locations of pulseaudio and libsndfile.
2016-09-20 11:32:08 +03:00
Mark H Weaver 846b2534df
gnu: emacs: Update to 25.1.
* gnu/packages/emacs.scm (emacs): Update to 25.1.
2016-09-19 23:45:25 -04:00
Mark H Weaver 6509a1e1e0
gnu: linux-libre: Update to 4.7.4.
* gnu/packages/linux.scm (linux-libre)
(%linux-libre-version, %linux-libre-hash): Update to 4.7.4.
2016-09-19 18:42:29 -04:00
Mark H Weaver a8b9c575aa
gnu: linux-libre@4.4: Update to 4.4.21.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.21.
2016-09-19 18:40:59 -04:00
Mark H Weaver 55ac38f986
gnu: linux-libre@4.1: Update to 4.1.33.
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.33.
2016-09-19 18:37:22 -04:00
Nicolas Goaziou 006a832ccb
gnu: emacs-org: Update to 20160912.
* gnu/packages/emacs.scm (emacs-org): Update to 20160912.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-09-19 23:35:48 +03:00
Efraim Flashner 8120205ccd
gnu: python2-cov-core: Use strip-python2-variant.
* gnu/packages/python.scm (python-cov-core)[properties]: New field,
declare python2-variant.
(python2-cov-core): Use strip-python2-variant.
2016-09-19 23:25:01 +03:00
Leo Famulari d404a6f971
gnu: gnupg: Fix test failure.
* gnu/packages/patches/gnupg-fix-expired-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnupg.scm (gnupg): Use it.
2016-09-19 16:09:56 -04:00
Hartmut Goebel dfdaea32e9
gnu: python-django, python2-django: Fix propagated- and native-inputs.
setuptools is a run-time dependency (sic!), all others are required
for testing only.

* gnu/packages/django.scm (python-django) [propagated-inputs,
  native-inputs]: Exchange them. Move tzdata to new native-inputs.
  Enhance comments.
  (python2-django) [propagated-inputs] change into native-inputs.
  Enhance comment.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-19 23:41:23 +09:00
Ludovic Courtès 4a84a48742
services: console-font: A single service handles all the VTs.
* gnu/services/base.scm (%default-console-font): New variable.
(console-font-shepherd-services): New procedure.
(console-font-service-type): Change to use 'service-type'.
(console-font-service): Rewrite using 'simple-service'.
(%base-services): Use a single CONSOLE-FONT-SERVICE-TYPE instance.
* gnu/system/install.scm (installation-services): Likewise.
2016-09-19 23:36:17 +09:00
Ludovic Courtès 71654dfdda
services: Add 'simple-service'.
* gnu/services.scm (simple-service): New procedure.
* doc/guix.texi (Service Reference): Document it.
2016-09-19 23:11:19 +09:00
Efraim Flashner bf307a7a54
gnu: efl: Add recommended build flags.
* gnu/packages/enlightenment.scm (efl)[inputs]: Add libwebp.
[arguments]: Add configure-flags to enable xinput22, image-loader-webp,
multisense, opengl with egl support.
2016-09-19 15:46:34 +03:00
Efraim Flashner 5de2a99e79
gnu: efl: Update to 1.18.1.
* gnu/packages/enlightenment.scm (efl): Update to 1.18.1.
2016-09-19 15:46:33 +03:00
Efraim Flashner 6f27fbd807
gnu: ffmpeg@2.8: Update to 2.8.8.
* gnu/packages/video.scm (ffmpeg@2.8): Update to 2.8.8.
2016-09-19 15:46:26 +03:00
宋文武 6b87c10f58
gnu: Add Mr. Rescue.
* gnu/packages/games.scm (mrrescue): New variable.
2016-09-19 19:24:18 +08:00
Roel Janssen eb24341ffb
gnu: Add r-biocinstaller.
* gnu/packages/bioinformatics.scm (r-biocinstaller): New variable.
2016-09-19 11:56:44 +02:00
ng0 c2c84add54
gnu: racket: Update to 6.6
* gnu/packages/scheme.scm (racket): Update to 6.6.
2016-09-19 11:53:30 +02:00
Ben Woodcroft de96ea286d
gnu: python-biom-format: Move inputs to propagated-inputs.
* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format)
[inputs]: Move all from here ...
[propagated-inputs]: ... to here.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 7bba95b769
gnu: seqmagick: Use BioPython 1.66.
* gnu/packages/bioinformatics.scm (seqmagick)[inputs]: Use
python2-biopython-1.66 instead of python2-biopython.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4b1a152826
gnu: Add python2-biopython-1.66.
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 8c8da1389e
gnu: python-biopython: Use 'python2-variant'.
* gnu/packages/bioinformatics.scm (python-biopython)[properties]: New field.
[native-inputs]: Remove field.
(python-biopython): Use 'strip-python-variant'.
2016-09-19 15:44:20 +10:00
Ben Woodcroft 4ce6030588
gnu: python-biopython: Update to 1.68.
* gnu/packages/bioinformatics.scm (python-biopython): Update to 1.68.
[arguments]: New field.
2016-09-19 15:44:18 +10:00
Nicolas Goaziou ded5d02bd0
gnu: wireshark: Update to 2.2.0.
* gnu/packages/networking.scm (wireshark): Update to 2.2.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-18 21:03:48 -04:00
Efraim Flashner c4605e4c97
gnu: onionshare: Fix build.
This commit is a follow-up to b8ea5204ab.

* gnu/packages/tor.scm: Add 'gpl3+' to guix-licenses import, Add
python-build-system.
(onionshare)[licenses]: Remove license namespace.
2016-09-18 23:27:36 +03:00
Efraim Flashner b8ea5204ab
gnu: Add onionshare.
* gnu/packages/tor.scm (onionshare): New variable.
* gnu/packages/patches/onionshare-fix-install-paths.patch: New variable.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-18 23:19:46 +03:00
Efraim Flashner d488d5d65b
gnu: Add python-nautilus.
* gnu/packages/python.scm (python-nautilus): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 153e58c568
gnu: Add python-bcrypt.
* gnu/packages/password-utils.scm (python-bcrypt): New variable.
2016-09-18 23:19:46 +03:00
Efraim Flashner 0aea283a65
gnu: Add python-nose2.
* gnu/packages/python.scm (python-nose2): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 12f839fdf6
gnu: Add python-cov-core.
* gnu/packages/python.scm (python-cov-core): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 257023978a
gnu: Add python-consul.
* gnu/packages/python.scm (python-consul): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner ddc63a5611
gnu: Add python-graphene.
* gnu/packages/python.scm (python-graphene): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 894810c7c9
gnu: Add python-django-filter.
* gnu/packages/django.scm (python-django-filter): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 23b563dcfd
gnu: Add python-pytest-django.
* gnu/packages/django.scm (python-pytest-django): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner de2966cfe8
gnu: Add python-sqlalchemy-utils.
* gnu/packages/python.scm (python-sqlalchemy-utils): New variable.
2016-09-18 23:19:45 +03:00
Efraim Flashner 7ee5157579
gnu: Add python-graphql-relay.
* gnu/packages/python.scm (python-graphql-relay): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 05b7a59336
gnu: Add python-graphql-core.
* gnu/packages/python.scm (python-graphql-core): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 44547e5153
gnu: Add python-pytest-mock.
* gnu/packages/python.scm (python-pytest-mock): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 5cb2fe446b
gnu: Add python-promise.
* gnu/packages/python.scm (python-promise): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d98bfaf23
gnu: Add python-peewee.
* gnu/packages/databases.scm (python-peewee): New variable.
2016-09-18 23:19:44 +03:00
Efraim Flashner 4d3fa5a421
gnu: Add python-pika.
* gnu/packages/python.scm (python-pika): New variable.
2016-09-18 23:19:43 +03:00
Efraim Flashner bff8be80c9
gnu: xorriso: Update to 1.4.6.
* gnu/packages/cdrom.scm (xorriso): Update to 1.4.6.
2016-09-18 23:14:02 +03:00
Efraim Flashner 0bb9461506
gnu: autoconf-archive: Update to 2016.09.16.
* gnu/packages/autotools.scm (autoconf-archive): Update to 2016.09.16.
2016-09-18 18:10:10 +03:00
John Darrington e4360e16f9
gnu: gtk+ use modify-phases
* gnu/packages/gtk.scm (arguments): Replace alist-cons-before with modify-phases
2016-09-18 14:42:26 +02:00
John Darrington 5d87088c39
gnu: Add sendmail
* gnu/packages/mail.scm (sendmail): New variable.
2016-09-18 09:40:44 +02:00
Stefan Reichoer 4efb9c5478
gnu: Add python-glances.
* gnu/packages/python.scm (python-glances, python2-glances): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 19:17:54 -04:00
Leo Famulari 082138e953
gnu: diffoscope: Update to 60.
* gnu/packages/package-management.scm (diffoscope): Update to 60.
2016-09-17 19:02:42 -04:00
Rene Saavedra 6aeaba8917
gnu: gnome-session: Update to 3.20.2.
* gnu/packages/gnome.scm (gnome-session): Update to 3.20.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-17 17:01:00 -04:00
John Darrington 8f65585b14
doc: "filesystem" -> "file system"
* doc/guix.texi: "filesystem" -> "file system"
* gnu/packages/admin.scm: "filesystem" -> "file system"
* gnu/packages/cdrom.scm: "filesystem" -> "file system"
* gnu/packages/compression.scm: "filesystem" -> "file system"
* gnu/packages/disk.scm: "filesystem" -> "file system"
* gnu/packages/gnome.scm: "filesystem" -> "file system"
* gnu/packages/irc.scm: "filesystem" -> "file system"
* gnu/packages/linux.scm: "filesystem" -> "file system"
* gnu/packages/mail.scm: "filesystem" -> "file system"
* gnu/packages/mpd.scm: "filesystem" -> "file system"
* gnu/packages/ocaml.scm: "filesystem" -> "file system"
* gnu/packages/perl.scm: "filesystem" -> "file system"
* gnu/packages/python.scm: "filesystem" -> "file system"
* gnu/packages/search.scm: "filesystem" -> "file system"
* gnu/packages/tls.scm: "filesystem" -> "file system"
* gnu/services/mail.scm: "filesystem" -> "file system"
2016-09-16 18:16:13 +02:00
Ricardo Wurmus 9159562441
gnu: Add Extempore.
* gnu/packages/music.scm (extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 38098bf7b4
gnu: Add portmidi-for-extempore.
* gnu/packages/music.scm (portmidi-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 2a9b10c7cd
gnu: Add kiss-fft-for-extempore.
* gnu/packages/algebra.scm (kiss-fft-for-extempore): New variable.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus 921cb13a96
gnu: Add llvm-for-extempore.
* gnu/packages/llvm.scm (llvm-for-extempore): New variable.
* gnu/packages/patches/llvm-for-extempore.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2016-09-16 17:31:12 +02:00
Ricardo Wurmus ac2a38a59a
gnu: Add stb-image-for-extempore.
* gnu/packages/image.scm (stb-image-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 5a82f933f3
gnu: Add assimp.
* gnu/packages/graphics.scm (assimp): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus 78acbcb53f
gnu: Add nanovg-for-extempore.
* gnu/packages/gl.scm (nanovg-for-extempore): New variable.
2016-09-16 17:31:11 +02:00
Ricardo Wurmus c533589c66
gnu: Add r-e1071.
* gnu/packages/statistics.scm (r-e1071): New variable.
2016-09-16 17:29:48 +02:00
Ricardo Wurmus c72c12491a
gnu: Add r-rtsne.
* gnu/packages/statistics.scm (r-rtsne): New variable.
2016-09-16 17:29:48 +02:00
Brendan Tildesley f6875394a6
gnu: Add par2cmdline.
* gnu/packages/backup.scm (par2cmdline): New variable.
2016-09-15 22:39:31 -05:00
Tobias Geerinckx-Rice 7f39e13180
gnu: prosody: Don't generate example SSL certificates.
They are non-deterministic and of questionable utility.

* gnu/packages/messaging.scm (prosody)[arguments]: Add #:configure-flags.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 9bd259d82d
gnu: polipo: Use 'modify-phases'.
* gnu/packages/web.scm (polipo)[arguments]: Use 'modify-phases'.
2016-09-16 01:54:00 +02:00
Tobias Geerinckx-Rice 60880ac556
gnu: iodine: Use net-tools' ifconfig with an absolute path.
* gnu/packages/networking.scm (iodine)[arguments]: Add fix-ifconfig-path
phase.
[inputs]: Add net-tools.
2016-09-16 01:53:51 +02:00
Tobias Geerinckx-Rice 71af71dc74
gnu: hexchat: Update to 2.12.1.
* gnu/packages/messaging.scm (hexchat): Update to 2.12.1.
[inputs]: Add luajit.
[description]: Wrap to <=80 characters.
2016-09-16 01:49:13 +02:00
Tobias Geerinckx-Rice dd65f3b744
gnu: Add mcelog.
* gnu/packages/linux.scm (mcelog): New variable.
2016-09-16 01:49:13 +02:00
David Craven 25847b327e
gnu: kernel-config: Find configuration file for i686.
* gnu/packages/linux.scm (kernel-config): Find configuration file for
  i686.
  (make-linux-libre)[origin]: Apply patch correctly.
2016-09-15 21:57:51 +02:00
Ludovic Courtès 4a187c556d
gnu: chibi-scheme: Use 'modify-phases'.
* gnu/packages/scheme.scm (chibi-scheme)[arguments]: Use
'modify-phases'.
2016-09-15 18:56:41 +02:00
Arun Isaac 797a5cf57f
gnu: Add darkhttpd.
* gnu/packages/web.scm (darkhttpd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 11:23:01 -04:00
Vincent Legoll d002121b5e
gnu: nss-certs and nss: Update to 3.26
* gnu/packages/certs.scm (nss-certs): Update to 3.26.
* gnu/packages/gnuzilla.scm (nss): Update to 3.26.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-15 09:43:09 -04:00
宋文武 ab179eaf98
gnu: Add gnome-dictionary.
* gnu/packages/gnome.scm (gnome-dictionary): New variable.
2016-09-15 15:48:26 +08:00
Marius Bakke 5467ea6200
gnu: Add python-natsort.
* gnu/packages/python.scm (python-natsort, python2-natsort): New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke df94a6b57d
gnu: Add python-pytest-flakes.
* gnu/packages/python.scm (python-pytest-flakes, python2-pytest-flakes):
  New variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:56:02 -04:00
Marius Bakke 66f95b209a
gnu: Add python-pytest-pep8.
* gnu/packages/python.scm (python-pytest-pep8, python2-pytest-pep8): New
  variables.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 20:55:58 -04:00
ng0 74c0282c45
gnu: Add mhonarc.
* gnu/packages/mail.scm (mhonarc): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 17:32:07 -04:00
ng0 991847748a
gnu: gnurl: Update to 7.50.3.
* gnu/packages/gnunet.scm (gnurl): Update to 7.50.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 16:38:08 -04:00
Jan Nieuwenhuizen 253745d756
gnu: hydra: Update to 20151030.1ff48da.
* gnu/packages/ci.scm (hydra): Update to 20151030.1ff48da (fixes building with
nix-1.11.x).
[source]: Remove 'hydra-automake-1.15.patch'.
[inputs]: Add libpqxx and perl-net-statsd.
* gnu/packages/patches/hydra-automake-1.15.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:07 -04:00
Jan Nieuwenhuizen fe71eee076
gnu: Add libpqxx.
* gnu/packages/databases.scm (libpqxx): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 16c6a01e3f
gnu: Add perl-net-statsd.
* gnu/packages/perl.scm (perl-net-statsd): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 49735d8de1
gnu: perl-image-magick: Disable tests.
* gnu/packages/imagemagick.scm (perl-image-magick)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:06 -04:00
Jan Nieuwenhuizen 2792a6b470
gnu: perl-gd: Disable tests.
* gnu/packages/gd.scm (perl-gd)[arguments]: Add #:tests?.

Signed-off-by: Leo Famulari <leo@famulari.name>
2016-09-14 15:43:02 -04:00
Efraim Flashner 6ea541e016
gnu: links: Use 'modify-phases'.
* gnu/packages/links.scm (links)[arguments]: Use 'modify-phases'.
2016-09-14 22:04:50 +03:00
Efraim Flashner 7ddacf88ef
gnu: links: Update to 2.13.
* gnu/packages/links.scm (links): Update to 2.13.
2016-09-14 22:02:40 +03:00
Leo Famulari 2a0ed3254b
gnu: curl: Update replacement to 7.50.3 [fixes CVE-2016-7167].
* gnu/packages/curl.scm (curl)[replacement]: Update to 7.50.3.
(curl-7.50.2): Replace with ....
(curl-7.50.3): ... this.
2016-09-14 14:12:04 -04:00
Leo Famulari b5b2c11b5e
gnu: mariadb: Update to 10.1.17 [fixes CVE-2016-6662 ].
* gnu/packages/databases.scm (mariadb): Update to 10.1.17.
2016-09-14 13:52:19 -04:00
Leo Famulari 362bc747a2
gnu: mysql: Update to 5.7.15 [fixes CVE-2016-6662].
* gnu/packages/databases.scm (mysql): Update to 5.7.15.
[source]: Remove obsolete 'mysql-fix-failing-test.patch'.
* gnu/packages/patches/mysql-fix-failing-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2016-09-14 13:52:18 -04:00
David Thompson ddda5338b8
gnu: guile-next: Update to 2.1.4.
* gnu/packages/guile.scm (guile-next): Update to 2.1.4.
2016-09-14 11:14:47 -04:00
Christopher Baines 8bebe734ca
gnu: Add emacs-es-mode.
* gnu/packages/emacs.scm (emacs-es-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-14 16:36:38 +02:00
Tobias Geerinckx-Rice 271447ff8e
gnu: Remove unused, obsolete, private rlog.
* gnu/packages/crypto.scm (rlog): Remove variable.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice b6f87ec003
gnu: encfs: Update to 1.9.
* gnu/packages/crypto.scm (encfs): Update to 1.9.
[source]: Remove bundled TinyXML2 in a snippet.
[build-system]: Switch to cmake-build-system.
[arguments]: Remove autotools-related phases and configure-flags.
Don't use bundled TinyXML2. Move under *inputs.
[native-inputs]: Remove autoconf, automake, libtool, and pkg-config.
Add expect.
[inputs]: Remove boost and rlog, while adding attr and tinyxml2.
[license]: Add expat licence for new easylogging++.h file.
2016-09-14 13:02:53 +02:00
Tobias Geerinckx-Rice 931bd7f6ce
gnu: Add tinyxml2.
* gnu/packages/xml.scm (tinyxml2): New variable.
2016-09-14 13:02:53 +02:00
Christopher Baines 76f31f0b2c
gnu: Add direnv.
* gnu/packages/shellutils.scm (direnv): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
2016-09-14 15:47:19 +08:00
Ricardo Wurmus 85313be89d
gnu: Add guile2.2-redis.
* gnu/packages/guile.scm (guile2.2-redis): New variable.
2016-09-14 09:01:26 +02:00
Ricardo Wurmus ea833d301b
gnu: guile-redis: Remove hard-coded Guile effective version.
* gnu/packages/guile.scm (guile-redis)[snippet]: Modify 'ac_subst_vars'
in 'configure', and use "@GUILE_EFFECTIVE_VERSION@" instead of "2.0" in
'Makefile.in'.
2016-09-14 09:01:21 +02:00