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38714 Commits

Author SHA1 Message Date
Danny Milosavljevic 49ec5d88c5
tests: docker: Run a guest guile inside the docker container. 
* gnu/tests/docker.scm (run-docker-test): Add parameters.  Load and run
docker container.  Check response of guest guile.
(build-tarball&run-docker-test): New procedure.
(%test-docker): Use it.
[description]: Modify.
 2019-01-15 12:16:46 +01:00
Ludovic Courtès 0c1bc5ecbe
status: Spin only on TTYs. 
* guix/status.scm (isatty?*): New procedure.
(spin!): Do nothing when port matches ISATTY?*.
(color-output?): Use ISATTY?*.
 2019-01-15 12:05:25 +01:00
Ludovic Courtès 35225dc579
guix package: '--upgrade' preserves package order. 
Fixes <https://bugs.gnu.org/31142>.
Reported by Chris Marusich <cmmarusich@gmail.com>.

* guix/scripts/package.scm (options->installable)[upgraded]: Use 'fold'
instead of 'fold-right'.  This reverts
eca16a3d1d.
* tests/guix-package-net.sh: Add 'guix package u' test.
 2019-01-15 12:05:25 +01:00
Ludovic Courtès 74a8b2cca1
gnu: guile-commonmark: Install .scm files in the right place. 
Previously they'd be installed in PREFIX/share/share/guile/site.

* gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New
fields.
 2019-01-15 12:05:21 +01:00
Arun Isaac 6aa4f09eb6
gnu: font-dosis: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-dosis): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
[native-inputs]: Remove unzip.
 2019-01-15 15:27:54 +05:30
Jonathan Brielmaier 4deeb1ed06
gnu: Add missing patch to local.mk. 
This was forgotten in ab533c613e.

* gnu/local.mk (dist_patch_DATA): Add
"allegro-fix-compilation-mesa-18.2.5-and-later.patch".

Signed-off-by: Jonathan Brielmaier <jbrielmaier@suse.de>
 2019-01-15 11:50:27 +02:00
Clément Lassieur 67c05f587a
gnu: python-git-review: Update to 1.27.0. 
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
 2019-01-15 10:49:18 +01:00
Clément Lassieur 104e1d55c7
gnu: prosody: Update to 0.11.2. 
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
 2019-01-15 10:49:18 +01:00
Efraim Flashner 38f18309e1
gnu: youtube-dl: Update to 2019.01.10. 
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
 2019-01-15 09:42:17 +02:00
Ludovic Courtès 0ee1e47edb
copy: Add '--verbosity'. 
This fixes a regression introduced in
f1de676ea8 since %DEFAULT-OPTIONS was
missing the 'debug key that 'set-build-options-from-command-line'
expects.

* guix/scripts/copy.scm (show-help, %options): Add '--verbosity'.
(%default-options): Rename 'verbosity' to 'debug'.  Add
'print-build-trace?', 'print-extended-build-trace?',
'multiplexed-build-output?', and 'verbosity'.
(guix-copy): Wrap body in 'with-status-verbosity'.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès e98c354d1a
gnu: guile-ssh: Use 'git-fetch'. 
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès a8b0556ea1
gnu: libssh: Update to 0.8.6. 
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès 152d4076a4
gnu: guile-json: Add 3.1.0. 
* gnu/packages/guile.scm (guile-json-3): New variable.
 2019-01-14 23:43:49 +01:00
Ludovic Courtès 60029204ee
pull: Don't prepend "origin/" to branch names. 
This is a followup to 37a6cdbf1b.

* guix/scripts/pull.scm (%options): Don't prepend "origin/" to branch
names.
 2019-01-14 23:43:49 +01:00
Ricardo Wurmus 21b41a79fe
gnu: Move Perl compression packages to new module. 
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
 2019-01-14 18:12:54 +01:00
Ricardo Wurmus b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages. 
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
 2019-01-14 15:42:32 +01:00
Ricardo Wurmus 2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel. 
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
 2019-01-14 15:39:22 +01:00
Ricardo Wurmus 73635e3f69
gnu: Add texlive-latex-changepage. 
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
 2019-01-14 14:13:21 +01:00
Ricardo Wurmus 6309d21579
gnu: Add texlive-generic-babel-german. 
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
 2019-01-14 14:13:21 +01:00
Ricardo Wurmus d68c8017f1
gnu: texlive-latex-base: Install configuration files. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
 2019-01-14 14:13:21 +01:00
Efraim Flashner 6c56e9c493
gnu: opencv: Use 'git-fetch'. 
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
 2019-01-14 15:07:42 +02:00
Efraim Flashner 7b28210531
gnu: python-django-filter: Use 'invoke'. 
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
 2019-01-14 15:07:42 +02:00
Efraim Flashner 8e21fa0bd3
gnu: opencv: Loosen test suite failures. 
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-01-14 15:07:42 +02:00
Efraim Flashner fdeb2def6a
gnu: opencv: Update configure flags. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
 2019-01-14 15:07:42 +02:00
Efraim Flashner b5baf9529e
gnu: opencv: Don't hardcode build directories. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
 2019-01-14 15:07:41 +02:00
Efraim Flashner 6949f45c10
gnu: opencv: Fix building on non-x86_64 systems. 
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
 2019-01-14 15:07:41 +02:00
Efraim Flashner c5c42f0a9c
gnu: gnurl: Update to 7.63.0. 
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
 2019-01-14 13:57:49 +02:00
Clément Lassieur 6e46be066a
gnu: emacs-pass: Update to 1.8. 
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
 2019-01-14 12:33:46 +01:00
Rutger Helling 478040d4fb
gnu: dosbox: Update to 0.74-2. 
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
 2019-01-14 09:08:04 +01:00
Mark H Weaver 72b308364f
gnu: linux-libre: Update to 4.20.2. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
 2019-01-14 01:29:47 -05:00
Mark H Weaver 8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15. 
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
 2019-01-14 01:28:02 -05:00
Mark H Weaver 8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
 2019-01-14 01:26:21 -05:00
Mark H Weaver e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
 2019-01-14 01:25:28 -05:00
Mark H Weaver 0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
 2019-01-14 01:24:40 -05:00
Gabriel Hondet 64d25f0be2
gnu: Add ocaml-merlin. 
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-13 23:30:15 +01:00
Gabriel Hondet cc353cc067
gnu: Add emacs-tldr. 
* gnu/packages/emacs.scm (emacs-tldr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-13 23:30:15 +01:00
Meiyo Peng 5144df2c6c
system: Add sudoedit to %setuid-programs. 
* gnu/system.scm (%setuid-programs): Add sudoedit.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-01-13 23:30:15 +01:00
Christopher Baines 24a23bea20
gnu: Add python-miniboa. 
python2-miniboa is required for the linkchecker testsuite.

* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
 2019-01-13 20:47:40 +00:00
Christopher Baines c4aa1ebc81
gnu: python-pillow: Update to 5.4.1. 
I'm looking at this, as this release fixes an issue with the Django testsuite:

https://github.com/python-pillow/Pillow/pull/3525

* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
 2019-01-13 17:09:52 +00:00
Ricardo Wurmus 14bba460ab
gnu: r-biocgenerics: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus 7097c7009d
gnu: r-annotate: Move to bioconductor. 
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
 2019-01-13 13:04:18 +01:00
Ricardo Wurmus c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran. 
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
 2019-01-13 13:04:18 +01:00
Efraim Flashner d691e96657
gnu: conda: Use 'invoke'. 
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner 675e7bba3e
gnu: python-conda: All phases return #t. 
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
 2019-01-13 12:44:03 +02:00
Efraim Flashner e227f248a6
gnu: python-conda: Fix test suite. 
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
 2019-01-13 12:44:00 +02:00
Ricardo Wurmus 82acd43cbd
gnu: Add r-raster. 
* gnu/packages/cran.scm (r-raster): New variable.
 2019-01-13 11:14:44 +01:00
Ricardo Wurmus 104e7c3c92
gnu: r-ggformula: Update to 0.9.1. 
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 3fe45dda0a
gnu: r-tibble: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
 2019-01-13 11:14:43 +01:00
Ricardo Wurmus 523762e332
gnu: r-psych: Update to 1.8.12. 
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
 2019-01-13 11:14:43 +01:00
Efraim Flashner d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux. 
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
 2019-01-13 11:31:04 +02:00