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19343 Commits

Author SHA1 Message Date
Peter Mikkelsen 1f919459eb
gnu: udisks: Add missing input. 
* gnu/packages/freedesktop.scm (udisks)[inputs]: Add libcap.
 2017-09-06 19:05:55 +03:00
Tobias Geerinckx-Rice 4ef6cfefaa
gnu: python-pyxb: Update to 1.2.6. 
* gnu/packages/xml.scm (python-pyxb): Update to 1.2.6.
 2017-09-06 17:12:42 +02:00
Tobias Geerinckx-Rice 35a4fefc01
gnu: iproute: Edit description. 
* gnu/packages/linux.scm (iproute)[description]: Re-order, be concise, and
omit information that is obsolete, misleading, or irrelevant to Guix users.
 2017-09-06 17:12:41 +02:00
Tobias Geerinckx-Rice ddcac5595e
gnu: iproute: Update to 4.13.0. 
* gnu/packages/linux.scm (iproute): Update to 4.13.0.
 2017-09-06 17:12:40 +02:00
Nicolas Goaziou e9ba22d6e1
gnu: emacs-org: Update to 20170906. 
* gnu/packages/emacs.scm (emacs-org): Update to 20170906, a.k.a. Org 9.1.
 2017-09-06 14:45:08 +02:00
Efraim Flashner 98df3a88b5
gnu: libzip: Update to 1.3.0 (fixes CVE-2017-14107). 
* gnu/packages/compression.scm (libzip): Update to 1.3.0.
[source]: Remove patch.
[arguments]: Remove custom 'patch-perl phase.
* gnu/packages/patches/libzip-CVE-2017-12858.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-09-06 14:20:43 +03:00
Efraim Flashner 3b7c606965
gnu: openjpeg: Fix CVE-2017-14151, CVE-2017-14152. 
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14151.patch,
gnu/packages/patches/openjpeg-CVE-2017-14152.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-06 14:20:40 +03:00
Nicolas Goaziou f049e79dc3
gnu: csound: Update to 6.09.1. 
* gnu/packages/audio.scm (csound): Update to 6.09.1.  Change source URI.
* gnu/packages/patches/csound-header-ordering.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove reference to patch above.
 2017-09-06 12:51:59 +02:00
Roel Janssen 026ebc141f
gnu: Update calibre to 3.6.0. 
* gnu/local.mk: Remove calibre-drop-unrar.patch
* gnu/packages/ebook.scm (calibre): Update to 3.6.0.
  Add python-html5-parser input.
* gnu/packages/patches/calibre-drop-unrar.patch: Remove file.
 2017-09-06 12:42:57 +02:00
Roel Janssen 13be557d98
gnu: Add python-html5-parser, python2-html5-parser. 
* gnu/packages/python.scm (python-html5-parser): New variable.
  (python2-html5-parser: New variable.
 2017-09-06 12:42:40 +02:00
Roel Janssen 2054b52201
gnu: Update python-lxml to 3.8.0. 
* gnu/packages/python.scm (python-lxml): Update to 3.8.0.
 2017-09-06 12:41:41 +02:00
Christopher Baines 21a656f590
gnu: Add emacs-go-mode. 
* gnu/packages/emacs.scm (emacs-go-mode): New variable.
 2017-09-06 08:51:38 +01:00
Efraim Flashner 744e9d0745
gnu: mutter: Add missing input. 
* gnu/packages/gnome.scm (mutter)[inputs]: Add libcap.
 2017-09-06 10:49:59 +03:00
Efraim Flashner 50918af29b
gnu: mutter: Only propagate glib once. 
* gnu/packages/gnome.scm (mutter)[propagated-inputs]: Remove duplicate
glib.
 2017-09-06 10:49:55 +03:00
Efraim Flashner 0cce140dc2
gnu: gnome-session: Add missing input. 
* gnu/packages/gnome.scm (gnome-settings)[inputs]: Add libcap.
 2017-09-06 10:49:51 +03:00
Efraim Flashner 77c2476ae3
gnu: polkit: Add missing input. 
* gnu/packages/polkit.scm (polkit)[inputs]: Add libcap.
 2017-09-06 10:49:47 +03:00
Efraim Flashner 124ac301c1
gnu: weston: Add missing input. 
* gnu/packages/freedesktop.scm (weston)[inputs]: Add libcap.
 2017-09-06 10:49:44 +03:00
Efraim Flashner 472c2223c0
gnu: kmscon: Add missing input. 
* gnu/packages/terminals.scm (kmscon)[inputs]: Add libcap.
 2017-09-06 10:49:31 +03:00
Christopher Baines fbc7b1f125
tests: Add test for installing from an ISO Image. 
* gnu/tests/install.scm (%test-iso-image-installer): New variable.
  (run-install): Add #:installation-disk-image-file-system-type as a keyword
  argument.
 2017-09-06 08:43:56 +01:00
Christopher Baines b069111f7a
vm: Call iso9660-image with #:register-closures? as #t. 
* gnu/system/vm.scm (system-disk-image): Call iso9660-image with
  #:register-closures? as #t.
 2017-09-06 08:43:52 +01:00
Christopher Baines e375d3fab7
vm: Add support for registering closures to iso9660-image. 
* gnu/system/vm.scm (iso9660-image): Add support for registering closures.
 2017-09-06 08:43:48 +01:00
Christopher Baines 309b8fe7e6
vm: Create /mnt in the generated ISO image in make-iso9660-image. 
This is used in the installation process, as the mountpoint for the target
filesystem.

* gnu/build/vm.scm (make-iso9660-image): Create /mnt within the generated ISO
  image.
 2017-09-06 08:43:44 +01:00
Christopher Baines 22bbdb5f79
vm: Add support for registering closures to make-iso9660-image. 
This mimics the functionality in the root-partition-initializer used in
creating the QEMU image. This helps when trying to run guix system init from
the generated ISO image.

* gnu/build/vm.scm (make-iso9660-image): Add support for registering closures.
 2017-09-06 08:43:38 +01:00
Efraim Flashner f1597427f2
gnu: file: Fix CVE-2017-1000249. 
* gnu/packages/file.scm (file)[replacement]: New field.
(file/fixed): New variable.
* gnu/packages/commencement.scm (file-boot0): Use package/inherit.
* gnu/packages/patches/file-CVE-2017-1000249.patch.
* gnu/local.mk (dist_patch_DATA): Register it.
 2017-09-05 23:04:05 +03:00
Tobias Geerinckx-Rice 5cf0997a0b
gnu: ruby-coderay: Update to 1.1.2. 
* gnu/packages/ruby.scm (ruby-coderay): Update to 1.1.2.
 2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 26ac5c90c1
gnu: nginx: Enable HTTP/2.0 (ngx_http_v2_module). 
* gnu/packages/web.scm (nginx)[arguments]: Add ‘--with-http_v2_module’ flag.
 2017-09-05 20:57:14 +02:00
Tobias Geerinckx-Rice 352a5b639b
services: web: Fix nginx-service-type's ‘file’ procedure. 
* gnu/services/web.scm (nginx-activation, nginx-shepherd-service): Replace
references to non-existent ‘config-file’ with ‘file’.
* doc/guix.texi (Web Services): Likewise.
 2017-09-05 20:57:14 +02:00
Leo Famulari 514c2f4806
gnu: tcpdump: Fix CVE-2017-[11541,11542,11543]. 
* gnu/packages/patches/tcpdump-CVE-2017-11541.patch,
gnu/packages/patches/tcpdump-CVE-2017-11542.patch
gnu/packages/patches/tcpdump-CVE-2017-11543.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/admin.scm (tcpdump)[source]: Use them.
 2017-09-05 14:53:50 -04:00
Efraim Flashner 0cae36b5e5
gnu: libmediainfo: Adjust build phases. 
* gnu/packages/video.scm (libmediainfo)[arguments]: Change to the build
directory before running autogen.
 2017-09-05 21:51:03 +03:00
Ricardo Wurmus fa67d56541
gnu: elogind: Update to 232.3. 
* gnu/packages/freedesktop.scm (elogind): Update to 232.3.
[home-page]: Use new upstream home page.
[arguments]: Disable tests, add new required configure flags; add build phase
"autogen".
[native-inputs]: Add autoconf, automake, libtool, and python.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 8036caa75a
gnu: r-tidyr: Update to 0.7.1. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
 2017-09-05 16:59:46 +02:00
Ricardo Wurmus 31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
 2017-09-05 16:59:45 +02:00
Roel Janssen 325c039c1d
gnu: Add r-sparql. 
* gnu/packages/bioinformatics.scm (r-sparql): New variable.
 2017-09-05 11:02:03 +02:00
Tobias Geerinckx-Rice c0ac72e18c
gnu: epiphany: Update to 3.24.4. 
* gnu/packages/gnome.scm (epiphany): Update to 3.24.4.
 2017-09-05 05:44:27 +02:00
Tobias Geerinckx-Rice b8fb94d5b8
gnu: libvirt: Make selected inputs native-inputs. 
* gnu/packages/virtualization.scm (libvirt)[inputs]: Move perl, polkit, and
python from here...
[native-inputs]: ...to here.
 2017-09-05 05:27:41 +02:00
Tobias Geerinckx-Rice 2f110b32a4
gnu: libvirt: Update to 3.7.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 3.7.0.
[native-inputs]: Add libxslt for xsltproc.
 2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice 864f2f0ef0
gnu: python-libvirt: Update to 3.7.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 3.7.0.
 2017-09-05 05:27:40 +02:00
Tobias Geerinckx-Rice b3fee5c141
gnu: Use HTTPS for libvirt.org. 
* gnu/packages/virtualization.scm (libvirt, python-libvirt)[home-page]:
Use HTTPS.
 2017-09-05 05:27:39 +02:00
Mark H Weaver b8b0f536a4
gnu: libidn2: Replace with 2.0.4 [security fixes]. 
* gnu/packages/libidn.scm (libidn2)[replacement]: New field.
(libidn2-2.0.4): New variable.
 2017-09-04 20:39:20 -04:00
Ludovic Courtès a913d9d926
gnu: emacs-tiny: Fix typo. 
* gnu/packages/emacs.scm (emacs-tiny)[description]: Fix typo.
 2017-09-04 23:52:44 +02:00
Christopher Baines 26361de404
gnu: Add emacs-minitest. 
* gnu/packages/emacs.scm (emacs-minitest): New variable.
 2017-09-04 22:31:37 +01:00
Christopher Baines 4138e782dc
vm: Remove redundant conditional in system-disk-image. 
* gnu/system/vm.scm (system-disk-image): Remove redundant conditional for
  #:file-system-type when calling qemu-image.
 2017-09-04 22:30:04 +01:00
Marius Bakke c427fda233
gnu: classpath-devel: Fix build after d10092b849. 
* gnu/packages/java.scm (classpath-devel)[arguments]: Actually run 'bootstrap'
phase.
 2017-09-04 22:08:55 +02:00
Alex Kost 8505d34829
gnu: emacs-browse-at-remote: Simplify 'check' phase. 
* gnu/packages/emacs.scm (emacs-browse-at-remote)[native-inputs]: Add
'ert-runner'.
[arguments]: Run it in the 'check' phase.
 2017-09-04 22:44:59 +03:00
Efraim Flashner 77bb6c227b
gnu: gpm: Fix build. 
* gnu/packages/linux.scm (gpm)[arguments]: Patch autogen.sh shebang
during the 'boottstrap phase.
 2017-09-04 22:36:01 +03:00
Efraim Flashner b82c63d013
gnu: quassel: Update package definition. 
* gnu/packages/irc.scm (quassel)[source]: Remove bundled scripts.
[arguments]: Update comments in 'configure-flags.
[inputs]: Remove oxygen-icons. Move extra-cmake-modules and qttools ...
[native-inputs]: ... to here.
 2017-09-04 22:21:33 +03:00
Leo Famulari 4b1dd9ab31
gnu: i3-wm: Update to 4.14. 
* gnu/packages/wm.scm (i3-wm): Update to 4.14.
 2017-09-04 11:19:27 -04:00
Leo Famulari 6cdb0f4d12
gnu: mpd: Update to 0.20.10. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.10.
 2017-09-04 11:19:23 -04:00
Maxim Cournoyer b9f67d6dda
services: Add auto-enable? parameter to the bluetooth-service. 
* gnu/services/desktop.scm (bluetooth-configuration): New record.
(bluetooth-shepherd-service): Use it.
(bluetooth-directory): New method.
(bluetooth-service-type): Use it to extend the etc-service-type service.
(bluetooth-service): Add `auto-enable?' parameter.
* doc/guix.texi (Desktop Services): Document it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:41:24 +02:00
Oleg Pykhalov 65101a2596
gnu: Add python-ghp-import. 
* gnu/packages/version-control.scm (python-ghp-import, python2-ghp-import):
New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Oleg Pykhalov 6325309898
gnu: Add emacs-tiny. 
* gnu/packages/emacs.scm (emacs-tiny): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Paul Garlick c4d4a77923
gnu: pt-scotch32: use keyword arguments from "scotch32" 
*gnu/packages/maths.scm (pt-scotch32) [arguments]: substitute keyword
arguments from "scotch32" package, ensuring that the INTSIZE32 macro is
set

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-04 15:24:04 +02:00
Mark H Weaver 6bd1c41e87
gnu: linux-libre: Update to 4.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.13.
(%linux-libre-hash): Update hash.
* gnu/packages/aux-files/linux-libre/4.12-i686.conf,
gnu/packages/aux-files/linux-libre/4.12-x86_64.conf: Delete files.
* gnu/packages/aux-files/linux-libre/4.13-i686.conf,
gnu/packages/aux-files/linux-libre/4.13-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2017-09-04 05:31:07 -04:00
Efraim Flashner 709a3bb7b8
gnu: weechat: Change to cmake-build-system. 
* gnu/packages/irc.scm (weechat)[build-system]: Switch to
cmake-build-system.
[arguments]: Remove configure-flags, disable tets, remove
'autogen phase.
[inputs]: Remove diffutils, libltdl, openssl, cyrus-sasl. Move gettext ...
[native-inputs]: ... to here. Remove autoconf, file, autogen, automake,
libtool.
 2017-09-04 11:21:42 +03:00
Kei Kebreau d10092b849
gnu: Put autoconf-related phases immediately after the 'unpack phase. 
* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
accordingly.
* gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
htslib-for-sambamba)[arguments]: Likewise.
* gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
* gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
* gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
* gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
* gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
* gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
* gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
Likewise.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
* gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
* gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
* gnu/packages/ftp.scm (weex)[arguments]: Likewise.
* gnu/packages/gnome.scm (dia)[arguments]: Likewise.
* gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
* gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
* gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
Likewise.
* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
* gnu/packages/irc.scm (weechat)[arguments]: Likewise.
* gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
* gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
* gnu/packages/linux.scm (gpm)[arguments]: Likewise.
* gnu/packages/logging.scm (glog)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
* gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
[arguments]: Likewise.
* gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
Likewise.
* gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
* gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
* gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
* gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
* gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
* gnu/packages/shells.scm (scsh)[arguments]: Likewise.
* gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
* gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
* gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
 2017-09-04 00:10:59 -04:00
Efraim Flashner 5804c7b616
gnu: libmateweather: Update inputs. 
* gnu/packages/mate.scm (libmateweather)[inputs]: Remove gdk-pixpuf.
Move dconf ...
[native-inputs]: ... to here.
 2017-09-03 18:01:12 +03:00
ng0 6a548c56ef
gnu: mate-desktop: Add 'gtk-doc' back to native-inputs. 
* gnu/packages/mate.scm (mate-desktop)[native-inputs]: Uncomment
'gtk-doc' as input.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:15 +03:00
ng0 60692df286
gnu: mate-themes: Update to 3.22.13. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.13.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:14 +03:00
ng0 68d2eea0b8
gnu: mate-themes: Update inputs. 
* gnu/packages/mate.scm (mate-themes)[inputs]: Remove gtk+, gtk-engines,
murrine. Move gdk-pixbuf ...
[native-inputs]: ... to here. Add gtk+@2.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:11 +03:00
ng0 4915c51986
gnu: mate-icon-theme: Remove 'gtk+' from native-inputs. 
* gnu/packages/mate.scm (mate-icon-theme)[native-inputs]: Remove 'gtk+'.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:08 +03:00
ng0 833b7e0af0
gnu: mate: Use https. 
* gnu/packages/mate.scm (mate-icon-theme)[source, home-page]: Use https.
(mate-themes)[source, home-page]: Likewise.
(mate-desktop)[source, home-page]: Likewise.
(libmateweather)[source, home-page]: Likewise.
(mate-menus)[source, home-page]: Likewise.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
 2017-09-03 16:18:04 +03:00
Mark H Weaver 3c7c916161
gnu: icecat: Update to 52.3.0-gnu1 and add more upstream fixes. 
* gnu/packages/gnuzilla.scm (icecat): Update to 52.3.0-gnu1.
[source]: Remove outdated patches and add more selected fixes from
upstream mozilla-esr52.
 2017-09-02 19:50:58 -04:00
Ludovic Courtès 4110fbc6dd
services: '%desktop-services' uses NetworkManager instead of Wicd. 
Discussed at
<https://lists.gnu.org/archive/html/guix-devel/2017-08/msg00277.html>.

* gnu/services/desktop.scm (%desktop-services): Remove call to
'wicd-service'.  Add instances of NETWORK-MANAGER-SERVICE-TYPE and
WPA-SUPPLICANT-SERVICE-TYPE.
* doc/guix.texi (Networking Services): Document
'network-manager-service-type' as being part of '%desktop-services'.
(Desktop Services): Replace Wicd with NM.
 2017-09-03 00:52:17 +02:00
Mark H Weaver 9a37764014
gnu: linux-libre@4.9: Update to 4.9.47. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.47.
 2017-09-02 17:46:22 -04:00
Mark H Weaver 3e51cd8c76
gnu: linux-libre@4.4: Update to 4.4.86. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.86.
 2017-09-02 17:45:37 -04:00
Jelle Licht 448339709d
gnu: node: Update to 8.4.0. 
* gnu/packages/patches/node-9077.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/node.scm (node): Update to 8.4.0.
(node)[arguments]: Removed broken linter test. Removed dns test.
 2017-09-02 22:59:18 +02:00
ng0 4da9beab14
gnu: Add emacs-base16-theme. 
* gnu/packages/emacs.scm (emacs-base16-theme): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-09-02 22:40:58 +03:00
Oleg Pykhalov eaf4ba6ef3
gnu: Add emacs-browse-at-remote. 
* gnu/packages/emacs.scm (emacs-browse-at-remote): New variable.

Signed-off-by: Alex Kost <alezost@gmail.com>
 2017-09-02 22:40:58 +03:00
Alex Kost 780162c797
gnu: emacs-guix: Update to 0.3.3. 
* gnu/packages/emacs.scm (emacs-guix): Update to 0.3.3.
 2017-09-02 22:40:58 +03:00
Andreas Enge c64692a72d
gnu: pari-gp: Update to 2.9.3. 
* gnu/packages/algebra.scm (pari-gp): Update to 2.9.3.
 2017-09-02 17:11:49 +02:00
Leo Famulari 7bac819614
gnu: rosegarden: Import bash and lirc modules. 
This is a followup to commit 9bc38f2872.

* gnu/packages/music.scm (define-module): Import (gnu packages bash) and
(gnu packages lirc).
 2017-09-02 11:07:57 -04:00
Leo Famulari 631c9f743f
gnu: net-tools: Build from a source archive instead of a Git checkout. 
* gnu/packages/linux.scm (net-tools)[source]: Use url-fetch and adjust
the source URL accordingly.
[native-inputs]: Add UNZIP.
(net-tools-for-tests)[native-inputs]: Add field so that we can exclude UNZIP.
 2017-09-02 11:07:56 -04:00
Kei Kebreau d536113df0
gnu: openjpeg: Fix CVE-2017-{14040,14041}. 
* gnu/packages/image.scm (openjpeg)[source]: Add patches.
* gnu/packages/patches/openjpeg-CVE-2017-14040.patch,
gnu/packages/patches/openjpeg-CVE-2017-14041.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-02 10:21:03 -04:00
宋文武 65e4109cdc
gnu: emacs-cider: Update to 0.15.0. 
* gnu/packages/emacs.scm (emacs-cider): Update to 0.15.0.
 2017-09-02 21:23:34 +08:00
Danny Milosavljevic 9bc38f2872
gnu: Add rosegarden. 
* gnu/packages/music.scm (rosegarden): New variable.
 2017-09-02 14:29:11 +02:00
Hartmut Goebel 7ae9542bf3
gnu: Add prison. 
* gnu/packages/kde-frameworks.scm (prison): New variable.
 2017-09-02 13:11:31 +02:00
Hartmut Goebel 7ade80220b
gnu: Add libdmtx. 
* gnu/packages/aidc.scm (libdmtx): New variable.
 2017-09-02 13:11:30 +02:00
Marius Bakke 3fe666aa29
gnu: perl-www-opensearch: Enable tests. 
Fixes <https://bugs.gnu.org/28253>.

* gnu/packages/web.scm (perl-www-opensearch)[native-inputs]: Add
PERL-CLASS-ERRORHANDLER, PERL-DATETIME, PERL-DATETIME-FORMAT-MAIL,
PERL-DATETIME-FORMAT-W3CDTF, PERL-FEED-FIND, PERL-MODULE-PLUGGABLE,
PERL-URI-FETCH, PERL-TEST-SIMPLE, PERL-XML-ATOM and PERL-XML-RSS.
 2017-09-02 12:32:51 +02:00
Marius Bakke 47111bb365
gnu: ffmpeg@2.8: Update to 2.8.13. 
* gnu/packages/video.scm (ffmpeg-2.8): Update to 2.8.13.
 2017-09-02 12:08:54 +02:00
Maxim Cournoyer f306825da8
gnu: exiv2: Update source checksum. 
The source archive was updated in place; only a cleanup of non functional
files was done (see: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=28326).

* gnu/packages/image.scm (exiv2)[source]: Update hash.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-09-02 10:40:42 +02:00
Ethan R. Jones 7bd65a6304
gnu: swish-e: Work around compilation error and test failures. 
* gnu/packages/search.scm (swish-e)[inputs]: Remove ZLIB and LIBXML2.
[arguments]: Add #:configure-flags.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-02 00:58:11 +02:00
Muriithi Frederick Muriuki 2038a48f4d
gnu: Add python-xenon. 
* gnu/packages/python.scm (python-xenon, python2-xenon) New variables.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-02 00:58:11 +02:00
Tobias Geerinckx-Rice 6106d195a2
gnu: perl-html-tree: Update to 5.07. 
* gnu/packages/web.scm (perl-html-tree): Update to 5.07.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice 33fd32c285
gnu: youtube-dl: Update to 2017.09.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.09.02.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice bbfc523d95
gnu: dub: Update to 1.5.0. 
* gnu/packages/ldc.scm (dub): Update to 1.5.0.
 2017-09-01 23:52:19 +02:00
Tobias Geerinckx-Rice def056d138
gnu: perl-context-preserve: Update source URL. 
* gnu/packages/perl.scm (perl-context-preserve)[source]: Update CPAN author.
 2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice 0c3a1674e4
gnu: python-ruamel.yaml: Update to 0.15.33. 
* gnu/packages/serialization.scm (python-ruamel.yaml): Update to 0.15.33.
 2017-09-01 23:52:18 +02:00
Tobias Geerinckx-Rice d5909be93b
gnu: gparted: Update home page. 
* gnu/packages/disk.scm (gparted)[home-page]: Use now-HTTPS gparted.org.
 2017-09-01 23:52:18 +02:00
Ricardo Wurmus ebbb6301a3
gnu: r-minimal: Update to 3.4.1. 
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
 2017-09-01 22:05:39 +02:00
Leo Famulari 3bf0245bb8
gnu: vdirsyncer: Update to 0.16.2. 
* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
 2017-09-01 13:54:23 -04:00
Leo Famulari 3a91ac8378
gnu: python-click-log: Update to 0.2.0. 
* gnu/packages/python.scm (python-click-log): Update to 0.2.0.
 2017-09-01 13:54:23 -04:00
Leo Famulari 19ecdbedd3
gnu: python-click-threading: Update to 0.4.3. 
* gnu/packages/python.scm (python-click-threading): Update to 0.4.3.
[source]: Use pypi-uri.
 2017-09-01 13:54:20 -04:00
Leo Famulari 2da21e48a8
gnu: python-icalendar: Update to 3.11.7. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
 2017-09-01 13:41:39 -04:00
Ricardo Wurmus 81195d139f
gnu: r-genomicalignments: Update to 1.12.2. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus 89b620e7ee
gnu: r-tidyr: Update to 0.7.0. 
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus c4a4ef39ed
gnu: Add r-tidyselect. 
* gnu/packages/statistics.scm (r-tidyselect): New variable.
 2017-09-01 15:11:58 +02:00
Ricardo Wurmus db2e43863c
gnu: r-vegan: Update to 2.4-4. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4.
[native-inputs]: Remove r-knitr.
 2017-09-01 15:11:57 +02:00
Ricardo Wurmus 7b92acdf52
gnu: r-maldiquant: Update to 1.16.4. 
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
 2017-09-01 15:11:57 +02:00
Ricardo Wurmus 6bd27981f6
gnu: r-bookdown: Update to 0.5. 
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
 2017-09-01 15:11:56 +02:00
Ricardo Wurmus c62276b2fa
gnu: r-ksamples: Update to 1.2-7. 
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
 2017-09-01 15:11:56 +02:00
Ricardo Wurmus 28f2f89391
gnu: r-distillery: Update to 1.0-4. 
* gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus f7b172187a
gnu: r-sp: Update to 1.2-5. 
* gnu/packages/cran.scm (r-sp): Update to 1.2-5.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus bf958fcd63
gnu: r-ggally: Update to 1.3.2. 
* gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
 2017-09-01 15:11:55 +02:00
Ricardo Wurmus 38ea6cfab4
gnu: r-reshape: Update to 0.8.7. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus eeb5432802
gnu: r-powerlaw: Update to 0.70.1. 
* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus a5c2980486
gnu: r-circlize: Update to 0.4.1. 
* gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
 2017-09-01 15:11:54 +02:00
Ricardo Wurmus ea4d4f7616
gnu: r-shape: Update to 1.4.3. 
* gnu/packages/cran.scm (r-shape): Update to 1.4.3.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 9077f6d9aa
gnu: r-tclust: Update to 1.3-1. 
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
 2017-09-01 15:11:53 +02:00
Ricardo Wurmus 347cab66b6
gnu: r-fastcluster: Update to 1.1.24. 
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
 2017-09-01 15:11:52 +02:00
Ricardo Wurmus 2dda8fca6f
gnu: r-plotrix: Update to 3.6-6. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 7d60652ebe
gnu: r-httr: Update to 1.3.1. 
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus e3323e0707
gnu: r-commonmark: Update to 1.4. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
 2017-09-01 15:11:51 +02:00
Ricardo Wurmus 5d84369bda
gnu: r-ade4: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus fb10c923b3
gnu: r-tibble: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
 2017-09-01 15:11:50 +02:00
Ricardo Wurmus edd5fd7208
gnu: r-rlang: Update to 0.1.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 5a00ef0950
gnu: r-knitr: Update to 1.17. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus 3949aef601
gnu: r-bh: Update to 1.65.0-1. 
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
 2017-09-01 15:11:49 +02:00
Ricardo Wurmus b93881b9c5
gnu: r-scales: Update to 0.5.0. 
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 2d99a31607
gnu: r-mgcv: Update to 1.8-19. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus fefe9f4753
gnu: r-matrix: Update to 1.2-11. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
 2017-09-01 15:11:48 +02:00
Ricardo Wurmus 3c2a5bf299
gnu: r-servr: Update to 0.7. 
* gnu/packages/web.scm (r-servr): Update to 0.7.
 2017-09-01 15:11:47 +02:00
Julien Lepiller 1cf306639c
gnu: php: Update to 7.1.9. 
* gnu/packages/php.scm (php): Update to 7.1.9.
 2017-09-01 14:17:46 +02:00
Julien Lepiller dcf7a8a660
gnu: java-slf4j-api: Fix tests. 
* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests
Adjust the jar content to prevent a test failure.
 2017-09-01 14:17:24 +02:00
Z. Ren 5fe2a139df
gnu: djvulibre: Remove timestamps from .svgz files. 
* gnu/packages/djvu.scm (djvulibre)[arguments]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 11:05:32 +02:00
Oleg Pykhalov 833ade67f1
gnu: Add emacs-tuareg. 
* gnu/packages/ocaml.scm (emacs-tuareg): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:39:55 +02:00
ng0 4735393a76
gnu: emacs-ebuild-mode: Update to 1.37. 
* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:34:50 +02:00
ng0 ab966b8f61
gnu: Add emacs-2048-game. 
* gnu/packages/emacs.scm (emacs-2048-game): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-09-01 10:34:36 +02:00
Ludovic Courtès 5c5ae46c00
packages: 'fold-packages' takes an optional 'modules' parameter. 
Suggested by Christopher Baines <mail@cbaines.net>.

* gnu/packages.scm (fold-packages): Add optional 'modules' parameter and
honor it.
 2017-09-01 10:29:39 +02:00
Ricardo Wurmus 75690c9f6b
gnu: r-rcas: Correct license. 
* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
 2017-09-01 10:26:31 +02:00
Ricardo Wurmus eda8f36cd6
gnu: r-rcas: Update to 1.3.3. 
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
 2017-09-01 10:26:30 +02:00
Efraim Flashner 7d099cbe13
gnu: mysql: Enable tests on aarch64. 
* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling
the tests on aarch64-linux.
 2017-09-01 10:50:39 +03:00
Ben Woodcroft f4bf420c84
gnu: vsearch: Update to 2.4.4. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
 2017-09-01 14:45:57 +08:00
Ben Woodcroft 25bd1fc1c1
gnu: metabat: Update to 2.12.1. 
* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1.
[source]: Remove it.  Use url-fetch.
 2017-09-01 14:45:57 +08:00
Thomas Danckaert 43d01672a1
gnu: netcdf: Fix reproducibility issue; remove unneeded references. 
* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded
  'Configured On' date; truncate reference to compiler store item.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert e464b4550e
gnu: hdf4: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to
  truncate hashes of compiler store items.
 2017-09-01 08:34:32 +02:00
Thomas Danckaert fd0378a147
gnu: hdf5: Avoid unneeded store references to compilers. 
* gnu/packages/maths.scm (hdf5) [arguments]: Add phase to patch
  "libhdf5.settings", removing references to the C/C++/Fortran compilers.
 2017-09-01 08:34:31 +02:00
Thomas Danckaert e3a1a1deda
gnu: hdf5: Add output for fortran interface. 
* gnu/packages/maths.scm (hdf5) [native-inputs]: Add gfortran.
  [outputs]: Add "fortran".
  [arguments]: Enable Fortran compilation; add "/lib" directory of the fortran
  output to the runpath of the Fortran libs; add a 'split phase to move
  all Fortran-related files to the the Fortran output store location.
 2017-09-01 08:34:24 +02:00
Arun Isaac a0596a2f27
gnu: python2-larch: Enable tests. 
* gnu/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python2-larch)[source]: Use it.
[arguments]: Move 'check' phase to before 'build' phase.
 2017-09-01 11:14:16 +05:30
Arun Isaac f618086220
gnu: python2-ttystatus: Enable tests. 
* gnu/packages/python.scm (python2-ttystatus)[arguments]: Replace 'check'
phase with custom function.
 2017-09-01 11:14:16 +05:30
Arun Isaac 689042e526
gnu: python2-cliapp: Enable tests. 
* gnu/packages/python.scm (python2-cliapp)[arguments]: Replace 'check' phase
with custom function.
 2017-09-01 11:14:16 +05:30
Mark H Weaver fe36ecf5c8
gnu: linux-libre: Update to 4.12.10. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.12.10.
(%linux-libre-hash): Update hash.
 2017-09-01 00:31:55 -04:00
Mark H Weaver 2131663a76
gnu: linux-libre@4.9: Update to 4.9.46. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.46.
 2017-09-01 00:31:16 -04:00
Mark H Weaver d215e41a26
gnu: linux-libre@4.4: Update to 4.4.85. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.85.
 2017-09-01 00:30:17 -04:00
Marius Bakke 1b3f5fc387
gnu: libxml2/fixed: Use patches from inherited package. 
This is a followup to 76fed2b3c4.

* gnu/packages/xml.scm (libxml2/fixed)(patches): Inherit patches from LIBXML2.
 2017-08-31 23:43:55 +02:00
Efraim Flashner 0ff44ba464
gnu: graphicsmagick: Fix CVE-2017-{13775,13776,13777}. 
* gnu/packages/imagemagick.scm (graphicsmagick)[source]: Add patches.
* gnu/packages/patches/graphicsmagick-CVE-2017-13775.patch,
gnu/packages/patches/graphicsmagick-CVE-2017-13776+CVE-2017-13777.patch:
New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2017-09-01 00:02:27 +03:00
Efraim Flashner d36212e94d
gnu: efl: Update to 1.20.3. 
* gnu/packages/enlightenment.scm (efl): Update to 1.20.3.
 2017-09-01 00:02:25 +03:00
Christopher Baines a9d5e4bed1
gnu: Fix current-guix. 
Without this change, I get errors like:
  ERROR: In procedure string-drop:
  ERROR: Value out of range 0 to 35: 51

* gnu/packages/package-management.scm (current-guix): Pass exactly the same
  path to git-predicate and local-file, to ensure that the select? function is
  compatible.
 2017-08-31 21:48:05 +01:00
Marius Bakke fa9f5222a9
gnu: sddm: Update to 0.15.0. 
* gnu/packages/display-managers.scm (sddm): Update to 0.15.0.
[source]: Update tarball name.
[inputs]: Add ELOGIND.
[arguments]: Adjust #:configure-flags for elogind support. Add phase to
patch hard-coded loginctl reference.
 2017-08-31 22:35:54 +02:00
Alex Vong 76fed2b3c4
gnu: libxml2: Fix CVE-2017-{0663,7375,7376,9047,9048,9049,9050}. 
* gnu/packages/patches/libxml2-CVE-2017-0663.patch,
gnu/packages/patches/libxml2-CVE-2017-7375.patch,
gnu/packages/patches/libxml2-CVE-2017-7376.patch,
gnu/packages/patches/libxml2-CVE-2017-9047+CVE-2017-9048.patch,
gnu/packages/patches/libxml2-CVE-2017-9049+CVE-2017-9050.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xml.scm (libxml2)[replacement]: New field.
(libxml2/fixed): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-08-31 21:45:36 +02:00
Marius Bakke ff54f194f3
gnu: postgresql: Update to 9.6.5. 
* gnu/packages/databases.scm (postgresql): Update to 9.6.5.

Release-notes: https://www.postgresql.org/docs/9.6/static/release-9-6-5.html
 2017-08-31 21:34:20 +02:00
Ricardo Wurmus 59ff96aafd
gnu: Remove python2-rpy2. 
Python 2 is no longer supported.

* gnu/packages/python.scm (python2-rpy2): Remove variable.
 2017-08-31 18:24:52 +02:00
Ricardo Wurmus deee5ddaf4
gnu: python-rpy2: Update to 2.9.0. 
* gnu/packages/python.scm (python-rpy2): Update to 2.9.0.
[arguments]: Run tests before install phase; add build phase "fix-tests".
[propagated-inputs]: Add python-jinja2 and python-pytz.
[inputs]: Add r-ggplot2, r-rsqlite, r-dplyr, r-dbplyr, and python-numpy.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus c92483bd63
gnu: python-rpy2: Update license. 
* gnu/packages/python.scm (python-rpy2)[license]: Correct GPLv3+ to GPLv2+;
list additional licenses.
 2017-08-31 18:24:51 +02:00
Ricardo Wurmus caa4e796e4
gnu: Add r-dbplyr. 
* gnu/packages/statistics.scm (r-dbplyr): New variable.
 2017-08-31 18:24:51 +02:00
Kei Kebreau 4eebfefe7e
gnu: retux: Update to 1.3.5. 
* gnu/packages/games.scm (retux): Update to 1.3.5.
 2017-08-31 11:38:00 -04:00
Kei Kebreau 95c1324adc
gnu: python-tmx: Update to 1.10. 
* gnu/packages/game-development.scm (python-tmx): Update to 1.10.
 2017-08-31 11:38:00 -04:00
Kei Kebreau b1d1a10c7c
gnu: python-sge-pygame: Update to 1.5.1. 
* gnu/packages/game-development.scm (python-sge-pygame,
python2-sge-pygame): Update to 1.5.1.
 2017-08-31 11:37:59 -04:00
Marius Bakke 7e31427ff0
gnu: python-pyjwt: Update to 1.5.2 [fixes CVE-2017-11424]. 
* gnu/packages/python.scm (python-pyjwt): Update to 1.5.2.
[source]: Add snippet to remove pre-compiled files.
[native-inputs]: Change PYTHON-PYTEST to PYTHON-PYTEST-3.0.
 2017-08-31 15:45:43 +02:00
Peter Mikkelsen 5883bb76f8
gnu: Add emacs-idris-mode. 
* gnu/packages/emacs.scm (emacs-idris-mode): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 14:58:34 +02:00
Peter Mikkelsen b9dcaced16
gnu: Add emacs-prop-menu. 
* gnu/packages/emacs.scm (emacs-prop-menu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 14:57:53 +02:00
Peter Mikkelsen b6dc69af1d
services: mpd: Remove the mpd-file field. 
Since MPD switches user, the pid-file must be in a writable dir.  This
is now always /var/run/mpd/(user)/pid.

* gnu/services/audio.scm (mpd-service-type): Add a activation-service
extension.
(<mpd-configuration>)[pid-file]: Remove.
(mpd-service): Rename to...
(mpd-shepherd-service): ... this.
(mpd-file-name, mpd-service-activation): New procedure.
* doc/guix.texi (Audio Services): Document the changes.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 14:43:26 +02:00
Tobias Geerinckx-Rice 79ada57ba9
gnu: knot: Update to 2.5.4. 
* gnu/packages/dns.scm (knot): Update to 2.5.4.
 2017-08-31 13:53:04 +02:00
Paul Garlick 1c25a52c4a
gnu: Add pt-scotch32. 
* gnu/packages/maths.scm (pt-scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Paul Garlick 1c39f3b877
gnu: Add "scotch32". 
* gnu/packages/maths.scm (scotch32): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-08-31 12:34:50 +02:00
Ben Woodcroft 0691851a64
gnu: bioinformatics: Work around more "dotless @INC" build failures. 
* gnu/packages/bioinformatics.scm (ncbi-vdb, sra-tools)[arguments]: Add
'set-perl-search-path' phase.
 2017-08-31 12:37:05 +08:00
Ben Woodcroft c959e5a1dc
gnu: ruby-2.2.7: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-2.2.7-rubygems-2613-ruby22.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.2.7)[source]: Use it.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft db542518b3
gnu: ruby-2.3.4: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-2.3.4-rubygems-2613-ruby23.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ruby.scm (ruby-2.3.4)[source]: Use it.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft 9770cbf9e2
gnu: ruby-2.4.1: Fix CVE-2017-{0899,0900,0901,0902}. 
* gnu/packages/patches/ruby-rubygems-2612-ruby24.patch,
gnu/packages/patches/ruby-rubygems-2613-ruby24.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/ruby.scm (ruby-2.4.1)[source]: Use them.
 2017-08-31 10:43:19 +08:00
Ben Woodcroft 690a904ad7
gnu: metabat: Update to 2.11.3. 
* gnu/packages/bioinformatics.scm (metabat): Update to 2.11.3.
[source]: Use git-fetch.  Remove boost-related patch.
* gnu/packages/patches/metabat-fix-boost-issue.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-31 10:43:18 +08:00
Marius Bakke 2d2e97bd71
gnu: vlc: Fix build and clean up expression. 
Commit 3e0c54bf4d touches 'configure.ac' which
in turn regenerates 'po/Makefile.in.in' with the wrong SHELL and breaks
install.  While at it, consolidate the other patching phases and remove
unneeded inputs.

* gnu/packages/video.scm (vlc)[arguments]: Consolidate patching phases into a
'patch-source' phase and run it immediately after unpack.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
 2017-08-31 03:43:54 +02:00
Marius Bakke 3e0c54bf4d
gnu: vlc: Recover lost phase. 
This is a followup to eb1f2420d5.

* gnu/packages/video.scm (vlc)[arguments]: Run the fix-livemedia-utils-prefix
phase before configure.
 2017-08-31 03:05:24 +02:00
Marius Bakke 4f68156140
gnu: gd: Replace with 2.2.5. 
Fixes CVE-2017-6362 and CVE-2017-7890.

* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd-2.2.5): New variable.
* gnu/packages/php.scm (gd-for-php): Remove variable
(php)[inputs]: Replace GD-FOR-PHP with GD-2.2.5.
* gnu/packages/patches/gd-CVE-2017-7890.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-31 02:49:43 +02:00
Tobias Geerinckx-Rice cad88b8533
gnu: claws-mail: Update to 3.15.1. 
* gnu/packages/mail.scm (claws-mail): Update to 3.15.1.
 2017-08-31 00:57:46 +02:00
Ludovic Courtès 9ff7161a06
gnu: Add texlive-latex-acmart. 
* gnu/packages/tex.scm (texlive-latex-acmart): New variable.
 2017-08-31 00:03:20 +02:00
Marius Bakke 9749746544
gnu: mbedtls-apache: Update to 2.6.0 [fixes CVE-2017-14032]. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.6.0.
 2017-08-30 22:41:40 +02:00
Marius Bakke eb1f2420d5
gnu: vlc: Remove obsolete test workaround. 
* gnu/packages/video.scm (vlc)[arguments]: Drop ac_cv_c_fast_math from
  #:configure-flags.  Remove related 'bootstrap' phase.
 2017-08-30 22:35:45 +02:00
Marius Bakke 552c3e95f3
gnu: vlc: Build with modular qt. 
* gnu/packages/video.scm (vlc)[inputs]: Remove QT.  Add QTBASE and QTX11EXTRAS.
[arguments]: Add CXXFLAGS=-std=gnu++11 to #:configure-flags.  Add
'fix-qt-include' phase.
 2017-08-30 22:22:51 +02:00
Marius Bakke 2de7d137b3
gnu: qemu: Update to 2.10.0. 
* gnu/packages/patches/qemu-CVE-2017-10664.patch,
gnu/packages/patches/qemu-CVE-2017-10806.patch,
gnu/packages/patches/qemu-CVE-2017-10911.patch,
gnu/packages/patches/qemu-CVE-2017-11334.patch,
gnu/packages/patches/qemu-CVE-2017-11434.patch,
gnu/packages/patches/qemu-CVE-2017-12809.patch:
gnu/packages/patches/qemu-CVE-2017-7493.patch,
gnu/packages/patches/qemu-CVE-2017-8112.patch,
gnu/packages/patches/qemu-CVE-2017-8309.patch,
gnu/packages/patches/qemu-CVE-2017-8379.patch,
gnu/packages/patches/qemu-CVE-2017-8380.patch,
gnu/packages/patches/qemu-CVE-2017-9524.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 2.10.0.
[source](patches): Remove.
 2017-08-30 20:50:13 +02:00
Marius Bakke ffeeda6bab
gnu: jsoncpp: Update to 1.8.2. 
* gnu/packages/serialization.scm (jsoncpp): Update to 1.8.2.
 2017-08-30 20:36:40 +02:00
Ricardo Wurmus 799247d2d9
gnu: multiqc: Update to 1.2. 
* gnu/packages/bioinformatics.scm (multiqc): Update to 1.2.
[source]: Remove patches.
[arguments]: Remove to enable tests.
[propagated-inputs]: Add python-spectra, python-requests, python-markdown,
python-lzstring.
* gnu/packages/patches/multiqc-fix-git-subprocess-error.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2017-08-30 17:32:00 +02:00
Ricardo Wurmus 4a7d2009c8
gnu: Add python-spectra. 
* gnu/packages/python.scm (python-spectra, python2-spectra): New variables.
 2017-08-30 17:32:00 +02:00
Ricardo Wurmus beed6abc1d
gnu: Add python-colormath. 
* gnu/packages/python.scm (python-colormath, python2-colormath): New
variables.
 2017-08-30 17:31:59 +02:00
Ricardo Wurmus bac5fd21a1
gnu: python-jinja2: Update to 2.9.6. 
* gnu/packages/python.scm (python-jinja2): Update to 2.9.6.
[arguments]: Add build phase "delete-incompatible-files".
 2017-08-30 17:31:59 +02:00
Ricardo Wurmus e7c76b0661
gnu: Add python-lzstring. 
* gnu/packages/compression.scm (python-lzstring, python2-lzstring): New
variables.
 2017-08-30 17:31:59 +02:00
Kei Kebreau b9319c1e22
gnu: hyperrogue: Update to 10.0g. 
* gnu/packages/games.scm (hyperrogue): Update to 10.0g.
 2017-08-30 07:43:24 -04:00
Arun Isaac a00379e7dc
gnu: Add linkchecker. 
* gnu/packages/web.scm (linkchecker): New variable.
 2017-08-30 12:53:39 +05:30
Thomas Danckaert c93ffc11d0
gnu: kdevelop: Update to 5.1.2. 
* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.2.
 2017-08-30 09:20:53 +02:00
Thomas Danckaert e0fbf37350
gnu: coda: Update to 2.18.2. 
* gnu/packages/maths.scm (coda): Update to 2.18.2.
 2017-08-30 09:20:52 +02:00
Stefan Reichör f3f82d1d1f
gnu: Add fzy. 
* gnu/packages/shellutils.scm (fzy): New variable.
 2017-08-30 09:20:52 +02:00
Rutger Helling 9dd14f1e08
gnu: wine: Update to 2.0.2. 
* gnu/packages/wine.scm (wine): Update to 2.0.2.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 13035eb2de
gnu: electrum: Update to 2.9.3. 
* gnu/packages/finance.scm (electrum): Update to 2.9.3.
[inputs]: Add python2-pyaes, python2-pysocks. Remove python2-slowaes.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 7a276cd945
gnu: Add python-pyaes. 
* gnu/packages/python.scm (python-pyaes, python2-pyaes): New variables.
 2017-08-30 09:20:52 +02:00
Carlo Zancanaro 07e62ae1c2
gnu: Add python-pysocks. 
* gnu/packages/python.scm (python-pysocks, python2-pysocks): New variables.
 2017-08-30 09:20:45 +02:00
Tobias Geerinckx-Rice b85a66b4d5
gnu: dtach: Install man page. 
* gnu/packages/screen.scm (dtach)[arguments]: Install the dtach(1) man page.
 2017-08-30 04:45:43 +02:00
Tobias Geerinckx-Rice 249ab8cc3e
gnu: nginx: Install man page. 
* gnu/packages/web.scm (nginx)[arguments]: Install the nginx(8) man page,
and add a comment about the non-GNU configure script.
 2017-08-30 03:24:19 +02:00
Kei Kebreau 3c8ba11a97
Update e-mail for Kei Kebreau. 
* .mailmap: Map kei@openmailbox.org to current address.
* gnu/local.mk: Replace kei@openmailbox.org to current address.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/calendar.scm: Likewise.
* gnu/packages/check.scm: Likewise.
* gnu/packages/compression.scm: Likewise.
* gnu/packages/documentation.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/freedesktop.scm: Likewise.
* gnu/packages/game-development.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnustep.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/hexedit.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/textutils.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/web-browsers.scm: Likewise.
* gnu/packages/patches/wmfire-update-for-new-gdk-versions.patch: Likewise.
 2017-08-29 20:13:24 -04:00
Tobias Geerinckx-Rice b1c699c4c0
gnu: perl-tk: Update to 804.034. 
* gnu/packages/tcl.scm (perl-tk): Update to 804.034.
 2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice 77217b4393
gnu: font-mathjax, js-mathjax: Remove hard-coded version. 
* gnu/package-s/javascript.scm (font-mathjax, js-mathjax)[arguments]: Re-use
font-mathjax's ‘version’ field instead of duplicating the version number.
 2017-08-29 23:40:09 +02:00
Tobias Geerinckx-Rice d6a7268bae
gnu: font-mathjax: Update to 2.7.2. 
* gnu/packages/javascript.scm (font-mathjax): Update to 2.7.2.
 2017-08-29 23:40:09 +02:00