6c90e183cf
gnu: Add Matio.
...
* gnu/packages/maths.scm (matio): New variable.
2016-05-12 19:59:52 +00:00
00775104ee
gnu: Add h5check.
...
* gnu/packages/maths.scm (h5check): New variable.
2016-05-12 19:59:52 +00:00
c8378eea10
gnu: Add hdf5-openmpi.
...
* gnu/packages/maths.scm (hdf5-openmpi): New variable.
2016-05-12 19:59:52 +00:00
b8d9c93bde
gnu: hdf5: Have configure honor SOURCE_DATE_EPOCH.
...
* gnu/packages/patches/hdf5-config-date.patch: New patch.
* gnu/packages/maths.scm (hdf5)[source]: Use it.
* gnu-system.am (dist_patch_DATA): Add it.
2016-05-12 19:59:52 +00:00
f622e2123b
gnu: hdf5: Patch output references to zlib.
...
* gnu/packages/maths.scm (hdf5)[arguments]: Use modify-phases. Add
'patch-references' phase.
2016-05-12 19:59:52 +00:00
04b7a7cd10
gnu: hdf5: Update to 1.8.17.
...
* gnu/packages/maths.scm (hdf5): Update to 1.8.17.
2016-05-12 19:59:52 +00:00
528bb46436
gnu: Add HYPRE.
...
* gnu/packages/maths.scm (hypre, hypre-openmpi): New variables.
* gnu/packages/patches/hypre-doc-tables.patch,
gnu/packages/patches/hypre-ldflags.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
2016-05-12 19:59:52 +00:00
1b39a196f8
gnu: Add nlopt.
...
* gnu/packages/maths.scm (nlopt): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2016-05-03 21:57:05 +02:00
c5ad883b16
gnu: r-rcpparmadillo: Update to 0.6.700.3.0.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.3.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.3.0.
2016-04-26 17:06:18 +02:00
458b47e31b
gnu: armadillo: Update to 6.700.4.
...
* gnu/packages/maths.scm (armadillo): Update to 6.700.4.
2016-04-20 14:21:30 +02:00
fc1adab148
gnu: packages: Use 'search-patches' everywhere.
...
* gnu/packages/abiword.scm: Use 'search-patches' for 'patches' field.
* gnu/packages/acl.scm: Likewise.
* gnu/packages/admin.scm: Likewise.
* gnu/packages/algebra.scm: Likewise.
* gnu/packages/animation.scm: Likewise.
* gnu/packages/apr.scm: Likewise.
* gnu/packages/audacity.scm: Likewise.
* gnu/packages/audio.scm: Likewise.
* gnu/packages/autotools.scm: Likewise.
* gnu/packages/avahi.scm: Likewise.
* gnu/packages/backup.scm: Likewise.
* gnu/packages/base.scm: Likewise.
* gnu/packages/bash.scm: Likewise.
* gnu/packages/bioinformatics.scm: Likewise.
* gnu/packages/cdrom.scm: Likewise.
* gnu/packages/ci.scm: Likewise.
* gnu/packages/cmake.scm: Likewise.
* gnu/packages/cpio.scm: Likewise.
* gnu/packages/cross-base.scm: Likewise.
* gnu/packages/dico.scm: Likewise.
* gnu/packages/doxygen.scm: Likewise.
* gnu/packages/ebook.scm: Likewise.
* gnu/packages/elf.scm: Likewise.
* gnu/packages/emacs.scm: Likewise.
* gnu/packages/engineering.scm: Likewise.
* gnu/packages/firmware.scm: Likewise.
* gnu/packages/flashing-tools.scm: Likewise.
* gnu/packages/fltk.scm: Likewise.
* gnu/packages/ftp.scm: Likewise.
* gnu/packages/games.scm: Likewise.
* gnu/packages/gawk.scm: Likewise.
* gnu/packages/gcc.scm: Likewise.
* gnu/packages/gd.scm: Likewise.
* gnu/packages/ghostscript.scm: Likewise.
* gnu/packages/glib.scm: Likewise.
* gnu/packages/gnome.scm: Likewise.
* gnu/packages/gnucash.scm: Likewise.
* gnu/packages/gnunet.scm: Likewise.
* gnu/packages/gnupg.scm: Likewise.
* gnu/packages/gnuzilla.scm: Likewise.
* gnu/packages/graphics.scm: Likewise.
* gnu/packages/grub.scm: Likewise.
* gnu/packages/gtk.scm: Likewise.
* gnu/packages/guile.scm: Likewise.
* gnu/packages/icu4c.scm: Likewise.
* gnu/packages/idutils.scm: Likewise.
* gnu/packages/image.scm: Likewise.
* gnu/packages/imagemagick.scm: Likewise.
* gnu/packages/irc.scm: Likewise.
* gnu/packages/ldc.scm: Likewise.
* gnu/packages/libcanberra.scm: Likewise.
* gnu/packages/libevent.scm: Likewise.
* gnu/packages/libreoffice.scm: Likewise.
* gnu/packages/libunwind.scm: Likewise.
* gnu/packages/libusb.scm: Likewise.
* gnu/packages/linux.scm: Likewise.
* gnu/packages/lirc.scm: Likewise.
* gnu/packages/llvm.scm: Likewise.
* gnu/packages/lsh.scm: Likewise.
* gnu/packages/lua.scm: Likewise.
* gnu/packages/lxqt.scm: Likewise.
* gnu/packages/mail.scm: Likewise.
* gnu/packages/maths.scm: Likewise.
* gnu/packages/mcrypt.scm: Likewise.
* gnu/packages/messaging.scm: Likewise.
* gnu/packages/mit-krb5.scm: Likewise.
* gnu/packages/mp3.scm: Likewise.
* gnu/packages/multiprecision.scm: Likewise.
* gnu/packages/music.scm: Likewise.
* gnu/packages/ninja.scm: Likewise.
* gnu/packages/nvi.scm: Likewise.
* gnu/packages/ocaml.scm: Likewise.
* gnu/packages/orpheus.scm: Likewise.
* gnu/packages/ots.scm: Likewise.
* gnu/packages/parallel.scm: Likewise.
* gnu/packages/patchutils.scm: Likewise.
* gnu/packages/pcre.scm: Likewise.
* gnu/packages/pdf.scm: Likewise.
* gnu/packages/perl.scm: Likewise.
* gnu/packages/plotutils.scm: Likewise.
* gnu/packages/polkit.scm: Likewise.
* gnu/packages/pulseaudio.scm: Likewise.
* gnu/packages/python.scm: Likewise.
* gnu/packages/qemu.scm: Likewise.
* gnu/packages/qt.scm: Likewise.
* gnu/packages/ratpoison.scm: Likewise.
* gnu/packages/rdf.scm: Likewise.
* gnu/packages/readline.scm: Likewise.
* gnu/packages/rush.scm: Likewise.
* gnu/packages/scheme.scm: Likewise.
* gnu/packages/screen.scm: Likewise.
* gnu/packages/sdl.scm: Likewise.
* gnu/packages/slim.scm: Likewise.
* gnu/packages/ssh.scm: Likewise.
* gnu/packages/tcl.scm: Likewise.
* gnu/packages/tcsh.scm: Likewise.
* gnu/packages/texinfo.scm: Likewise.
* gnu/packages/tls.scm: Likewise.
* gnu/packages/tor.scm: Likewise.
* gnu/packages/tv.scm: Likewise.
* gnu/packages/valgrind.scm: Likewise.
* gnu/packages/version-control.scm: Likewise.
* gnu/packages/video.scm: Likewise.
* gnu/packages/vpn.scm: Likewise.
* gnu/packages/vtk.scm: Likewise.
* gnu/packages/w3m.scm: Likewise.
* gnu/packages/web.scm: Likewise.
* gnu/packages/wicd.scm: Likewise.
* gnu/packages/wm.scm: Likewise.
* gnu/packages/xdisorg.scm: Likewise.
* gnu/packages/xfce.scm: Likewise.
* gnu/packages/xiph.scm: Likewise.
* gnu/packages/xml.scm: Likewise.
* gnu/packages/xorg.scm: Likewise.
* gnu/packages/zip.scm: Likewise.
2016-04-14 10:38:21 +03:00
ec8c7e4734
gnu: Add r-pracma.
...
* gnu/packages/maths.scm (r-pracma): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-04-12 14:55:10 -04:00
9c45c51992
gnu: Add c-graph.
...
* gnu/packages/maths.scm (c-graph): New variable.
2016-04-09 09:16:48 +02:00
53696f10c1
gnu: Add cddlib.
...
* gnu/packages/maths.scm (cddlib): New variable.
2016-04-05 19:22:36 +02:00
b146763a86
gnu: Add 4ti2.
...
* gnu/packages/maths.scm (4ti2): New variable.
2016-04-05 18:48:02 +02:00
0b65f1a013
gnu: Move pspp from maths.scm to statistics.scm
...
* gnu/packages/maths.scm (pspp): Deleted.
* gnu/packages/statistics.scm (pspp): New variable.
2016-04-04 07:15:14 +02:00
fd7575d479
gnu: pspp: Update to 0.10.1.
...
* gnu/packages/maths.scm (pspp): Update to 0.10.1.
2016-04-03 08:47:35 +03:00
f04433773d
gnu: glpk: Update to 4.60.
...
* gnu/packages/maths.scm (glpk): Update to 4.60.
2016-04-01 16:52:54 +03:00
e12f047f75
gnu: pspp: Update to 0.10.0.
...
* gnu/packages/maths.scm (pspp): Update to 0.10.0.
[inputs]: Switch gtk+-2 to gtk+, gtksourceview-2 to gtksourceview.
2016-03-26 22:39:29 +03:00
dfdf571688
gnu: petsc: Fix compiler configuration references.
...
* gnu/packages/maths.scm (petsc)[arguments]: When patching compiler
driver paths, do not assume they come from fortran input.
2016-03-16 18:32:25 -05:00
d588422e13
gnu: slepc: Set origin file-name.
...
* gnu/packages/maths.scm (slepc)[source]: Add file-name.
2016-03-16 18:32:25 -05:00
eb4f2cd7e3
gnu: glpk: Update to 4.59.
...
* gnu/packages/maths.scm (glpk): Update to 4.59.
2016-03-12 23:07:09 +02:00
289adba7a3
gnu: gnuplot: Use texlive-minimal instead of texlive-bin.
...
* gnu/packages/maths.scm (gnuplot)[inputs]: Replace texlive-bin by
texlive-minimal.
2016-03-09 22:36:45 +01:00
723a6910ca
gnu: glpk: Update to 4.58.
...
* gnu/packages/maths.scm (glpk): Update to 4.58.
2016-02-18 15:35:28 +02:00
ec4130b7e7
gnu: gnuplot: Update to 5.0.2.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.2.
2016-02-13 13:37:49 +01:00
c7b08410de
gnu: gmsh: Update to 2.11.0.
...
* gnu/packages/maths.scm (gmsh): Update to 2.11.0.
[arguments]: Replace 'check phase.
2016-01-06 10:49:23 -06:00
45147b0caa
gnu: Add xaos.
...
* gnu/packages/maths.scm (xaos): New variable.
Signed-off-by: Alex Kost <alezost@gmail.com>
2015-12-31 11:29:43 +03:00
e22d4ca4c4
gnu: Add r-rcpparmadillo.
...
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
2015-12-21 16:05:37 +01:00
b15e47f9e6
gnu: Add armadillo.
...
* gnu/packages/maths.scm (armadillo): New variable.
2015-12-21 15:47:40 +01:00
97003b5ccc
gnu: gnuplot: Update to 5.0.1.
...
* gnu/packages/maths.scm (gnuplot): Update to 5.0.1.
(native-inputs): 'texlive' -> 'texlive-bin'.
2015-11-24 11:41:46 -06:00
9cf5245497
gnu: slepc: Update to 3.6.2.
...
* gnu/packages/maths.scm (slepc): Update to 3.6.2.
[arguments]: Append "/lib" to arpack configure flag. Use 'inputs'
rather than '%build-inputs' in 'configure phase.
2015-11-20 11:58:40 -06:00
32187d99bb
gnu: petsc: Update to 3.6.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.6.2.
2015-11-20 11:58:40 -06:00
c69fa4380a
gnu: mumps: Update to 5.0.1.
...
* gnu/packages/maths.scm (mumps): Update to 5.0.1.
2015-11-20 11:58:40 -06:00
a124bbd2f4
gnu: Adjust formatting as recommended by 'guix lint'.
...
* gnu/packages/aidc.scm (barcode, qrencode),
gnu/packages/bash.scm (bash, bash-completion),
gnu/packages/busybox.scm (busybox),
gnu/packages/cdrom.scm (cdparanoia),
gnu/packages/cmake.scm (cmake),
gnu/packages/conkeror.scm (conkeror),
gnu/packages/cook.scm (cook),
gnu/packages/curl.scm (curl),
gnu/packages/docbook.scm (docbook-xsl),
gnu/packages/enlightenment.scm (enlightenment),
gnu/packages/games.scm (abbaye),
gnu/packages/geeqie.scm (exiv2),
gnu/packages/gimp.scm (gegl),
gnu/packages/gl.scm (glu, freeglut, ftgl),
gnu/packages/glib.scm (glib),
gnu/packages/gnome.scm (orbit2, gconf, geocode-glib),
gnu/packages/gstreamer.scm (gstreamer, gst-plugins-base),
gnu/packages/linux.scm (util-linux),
gnu/packages/lisp.scm (gcl, ecl),
gnu/packages/maths.scm (gnuplot, hdf5),
gnu/packages/ssh.scm (dropbear),
gnu/packages/web.scm (json-c): Remove tabulations and trailing
white spaces or reformat to fit within 80 columns.
* gnu/packages/audio.scm (aubio),
gnu/packages/emacs.scm (emacs-s),
gnu/packages/engineering.scm (geda-gaf),
gnu/packages/games.scm (dosbox),
gnu/packages/gnome.scm (gusb),
gnu/packages/gtk.scm (gtk+),
gnu/packages/guile.scm (guile-wisp),
gnu/packages/hurd.scm (hurd-headers),
gnu/packages/wm.scm (i3-wm): Adjust synopsis or description.
2015-11-13 23:45:55 +08:00
0534dd93ce
gnu: gsl: Update to 2.1.
...
* gnu/packages/maths.scm (gsl): Update to 2.1.
2015-11-12 16:53:43 +02:00
295fc0829b
gnu: pspp: Use gtksourceview-2.
...
* gnu/packages/maths.scm (pspp)[inputs]: Use gtksourceview-2.
2015-11-10 13:58:25 +02:00
d8c97beb06
gnu: Add wcalc.
...
* gnu/packages/maths.scm (wcalc): New variable.
2015-11-08 23:01:50 +02:00
19659accef
gnu: octave: Upgrade to 4.0.0.
...
* gnu/packages/maths.scm (octave): Update to 4.0.0.
2015-11-08 18:44:06 +02:00
552cb93c0a
gnu: glpk: Update to 4.57.
...
* gnu/packages/maths.scm (glpk): Update to 4.57.
2015-11-08 16:27:39 +02:00
5adbe65fec
gnu: gsl: Enable tests.
...
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
2015-11-02 21:04:18 +02:00
f133955122
gnu: gsl: Update to 2.0.
...
* gnu/packages/maths.scm (gsl): Update to 2.0.
[source]: Remove patches.
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove patches.
2015-11-02 21:04:18 +02:00
bd0b4379b2
gnu: openblas: Make substitutable on MIPS.
...
* gnu/packages/maths.scm (openblas)[arguments]: Make package
substitutable when the system is MIPS.
2015-10-30 17:47:54 +01:00
8a637e79ed
gnu: openblas: Set TARGET to SICORTEX on MIPS.
...
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to
make-flags when building for MIPS.
2015-10-30 17:47:54 +01:00
69851c59c7
gnu: openblas: Update to 0.2.15.
...
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
2015-10-29 15:44:31 +01:00
cbe9505778
gnu: units: Update to 2.12.
...
* gnu/packages/maths.scm (units): Update to 2.12.
2015-10-20 09:41:54 +03:00
127cbd85c0
gnu: glpk: Update to 4.56.
...
* gnu/packages/maths.scm (glpk): Update to 4.56.
2015-10-02 20:07:17 +02:00
71923a91b1
gnu: openblas: Fix configure flags on armhf and take target system into account for cross building.
...
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable
and enable runtime cpu detection only on x86 systems. Take the target
system into account when cross compiling.
2015-10-01 19:35:16 +02:00
75710da667
Merge branch 'master' into core-updates
2015-09-13 21:28:01 +02:00
194c7f95f1
gnu: Add FLANN.
...
* gnu/packages/maths.scm (flann): New variable.
2015-09-06 19:34:09 +02:00
96c4621056
gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases.
...
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools,
plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'.
* gnu/packages/check.scm (catch-framework): Likewise.
* gnu/packages/code.scm (global): Likewise.
* gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools):
Likewise.
* gnu/packages/engineering.scm (fastcap, fasthenry): Likewise.
* gnu/packages/gnuzilla.scm (nss): Likewise.
* gnu/packages/guile.scm (guile-minikanren): Likewise.
* gnu/packages/java.scm (swt): Likewise.
* gnu/packages/make-bootstrap.scm (%static-binaries): Likewise.
* gnu/packages/maths.scm (lpsolve): Likewise.
* gnu/packages/mp3.scm (mpc123): Likewise.
* gnu/packages/ninja.scm (ninja): Likewise.
* gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise.
* gnu/packages/screen.scm (dtach): Likewise.
* gnu/packages/synergy.scm (synergy): Likewise.
* gnu/packages/textutils.scm (utf8proc): Likewise.
* gnu/packages/version-control.scm (git-test-sequence): Likewise.
* gnu/packages/wicd.scm (wicd): Likewise.
2015-08-29 01:25:08 +02:00
c01876b1af
gnu: pspp: Update to 0.8.5.
...
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5.
[native-inputs]: Add TEXINFO.
2015-07-21 01:12:34 +02:00
e881752c39
gnu packages: Clean up synopses and descriptions.
...
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm,
gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm,
gnu/packages/code.scm, gnu/packages/compression.scm,
gnu/packages/databases.scm, gnu/packages/enchant.scm,
gnu/packages/firmware.scm, gnu/packages/fonts.scm,
gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm,
gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm,
gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm,
gnu/packages/haskell.scm, gnu/packages/language.scm,
gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm,
gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm,
gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm,
gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm,
gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl.scm, gnu/packages/pretty-print.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python.scm,
gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm,
gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm,
gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm,
gnu/packages/unrtf.scm, gnu/packages/version-control.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm,
gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm:
Fix typos. Trim long lines. Add missing periods in the end of sentences.
Use double spaces between sentences. Remove trailing whitespaces.
2015-07-18 13:05:01 +03:00
7c125ce023
gnu packages: Avoid description lines with leading "(".
...
* gnu/packages/curl.scm (curl): Reformat description to avoid a line
beginning with "(" because such lines break font-lock highlighting
in Emacs.
* gnu/packages/flashing-tools.scm (dfu-programmer): Likewise.
* gnu/packages/games.scm (gnugo): Likewise.
* gnu/packages/gnome.scm (json-glib): Likewise.
* gnu/packages/image.scm (jbig2dec): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/pdf.scm (mupdf): Likewise.
* gnu/packages/web.scm (perl-encode-locale): Likewise.
* gnu/packages/wordnet.scm (wordnet): Likewise.
* gnu/packages/xml.scm (libxml2):Likewise.
2015-07-18 13:05:01 +03:00
a17d45641b
gnu: Add deal.II.
...
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables.
* gnu/packages/patches/dealii-p4est-interface.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
a7f0141452
gnu: Add SLEPc.
...
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi)
(slepc-complex-openmpi): New variables.
2015-06-29 15:34:36 -05:00
8c94c886f6
gnu: Add arpack-ng-openmpi.
...
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
2015-06-29 15:34:36 -05:00
9a899cceab
gnu: petsc: Upgrade to 3.6.0.
...
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0.
* gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch.
* gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29 15:34:36 -05:00
cec86422b7
gnu: Add MUMPS.
...
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi)
(mumps-metis-openmpi): New variables.
* gnu/packages/patches/mumps-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
aa75ad0097
gnu: Add METIS.
...
* gnu/packages/maths.scm (metis): New variable.
2015-06-29 15:34:36 -05:00
700ff22219
gnu: Add p4est.
...
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29 15:34:36 -05:00
e1ff597a64
gnu: Add ScaLAPACK.
...
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29 15:34:36 -05:00
cf0ec6c46e
gnu: scotch, pt-scotch: Build esmumps libraries.
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* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps
phase. Install esmumps libraries and headers in 'install phase.
(pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add
make parallelism.
2015-06-29 15:34:36 -05:00
d6602ee9d4
gnu: scotch, pt-scotch: Use modify-phases.
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* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29 15:34:36 -05:00
6c7985408f
gnu: Update scotch to 6.0.4.
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* gnu/packages/maths.scm (scotch): Update to 6.0.4.
[arguments]: Add -fPIC to CFLAGS.
* gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a
new set of test fixes.
* gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch.
* gnu-system.am (dist_patch_DATA): Add it.
2015-06-29 15:34:36 -05:00
19afbea136
gnu: Replace versioned gfortran inputs with just "gfortran".
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* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with
"gfortran".
* gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise.
* gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu)
(superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise.
(octave)[native-inputs]: Likewise.
(gmsh)[propagated-inputs]: Likewise.
* gnu/packages/mpi.scm (openmpi)[inputs]: Likewise.
* gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise.
* gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with
"gfortran".
2015-06-25 18:28:54 +02:00
180a93c72a
gnu: gsl: Fix poly test on i686.
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* gnu/packages/patches/gsl-poly-test-fix-pt1.patch,
gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (gsl)[source]: Add patches.
2015-06-20 01:38:56 -04:00
0004c5904c
packages: Make 'location' field innate.
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* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
2015-06-11 23:33:32 +02:00
9aafbc0c13
gnu: Add wxmaxima.
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* gnu/packages/maths.scm (wxmaxima): New variable.
2015-05-26 10:24:11 -04:00
77af7b2407
gnu: maxima: Update to 5.36.1.
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* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (maxima): Update to 5.36.1. Add patch.
2015-05-26 10:23:38 -04:00
7f18257bea
gnu: Add lpsolve.
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* gnu/packages/maths.scm (lpsolve): New variable.
2015-05-20 23:21:50 +02:00
5b5ea159ac
gnu: openblas: Disable DYNAMIC_ARCH on MIPS.
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* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when
building for MIPS. Also make non-substitutable for MIPS.
2015-05-20 13:30:24 +02:00
ecf28847b2
gnu: openblas: Update to 0.2.14.
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* gnu/packages/maths.scm (openblas): Update to 0.2.14.
2015-05-15 13:53:30 +02:00
1ec78e9d71
gnu: octave: Add fftw, arpack, and glu inputs.
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* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack,
and glu.
[description]: Wrap to 80 columns.
2015-05-11 10:10:00 -05:00
af5b817ea9
gnu: openblas: build for all supported CPUs.
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* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
make flags. Remove "#:substitutable? #f".
2015-03-26 07:54:55 +01:00
87db65507e
Remove unused patchelf inputs.
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* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
unused patchelf from native-inputs.
2015-03-23 13:30:06 -04:00
61a529b421
gnu: Add double-conversion.
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* gnu/packages/maths.scm (double-conversion): New variable.
2015-03-23 10:38:06 +01:00
2742f87e17
gnu: Add SuiteSparse.
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* gnu/packages/maths.scm (suitesparse): New variable.
2015-03-23 10:19:45 +01:00
e73b49fbd6
gnu: Add openblas.
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* gnu/packages/maths.scm (openblas): New variable.
2015-03-23 10:08:28 +01:00
166191b377
gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'.
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* gnu/packages/avr.scm, gnu/packages/compression.scm,
gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm, gnu/packages/firmware.scm,
gnu/packages/flex.scm, gnu/packages/fontutils.scm,
gnu/packages/gd.scm, gnu/packages/ghostscript.scm,
gnu/packages/gnunet.scm, gnu/packages/graphics.scm,
gnu/packages/hugs.scm, gnu/packages/image.scm,
gnu/packages/linux.scm, gnu/packages/mail.scm,
gnu/packages/maths.scm, gnu/packages/mit-krb5.scm,
gnu/packages/python.scm, gnu/packages/rdf.scm,
gnu/packages/ssh.scm, gnu/packages/tcl.scm,
gnu/packages/xdisorg.scm, gnu/packages/xiph.scm,
gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft'
instead of 'bsd-style'.
2015-03-14 19:27:14 +01:00
c12efc72cf
gnu: Add glm.
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* gnu/packages/maths.scm (glm): New variable.
Co-authored-by: John Darrington <john@darrington.wattle.id.au>
2015-03-14 17:39:58 +01:00
12ed1216de
gnu: hdf5: Add input zlib.
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* gnu/packages/maths.scm (hdf5): Add input zlib.
2015-03-13 00:15:47 +01:00
40029cbe30
gnu: hdf5: Combine all outputs into one.
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* gnu/packages/maths.scm (hdf5): Combine the outputs "out", "bin", "lib" and
"include" into "out".
(gmsh, octave): Adapt list of inputs.
2015-03-12 23:59:49 +01:00
e62be58fc3
gnu: Add openspecfun.
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* gnu/packages/maths.scm (openspecfun): New variable.
2015-03-10 23:39:12 +01:00
e1605e36a8
gnu: Add openlibm.
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* gnu/packages/maths.scm (openlibm): New variable.
2015-03-10 23:38:55 +01:00
279663efa5
gnu: Add muparser.
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* gnu/packages/maths.scm (muparser): New variable.
2015-03-05 08:01:15 +01:00
1289062522
Merge branch 'core-updates'.
2015-03-04 14:07:23 +01:00
32158110b0
gnu: octave: Update to 3.8.2.
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* gnu/packages/maths.scm (octave): Update to 3.8.2.
2015-03-04 16:45:23 +08:00
f586c87705
gnu: Add 'file-name' fields for github source tarballs without a name.
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* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb),
gnu/packages/audio.scm (jack-2, lvtk),
gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie),
gnu/packages/game-development.scm (tiled),
gnu/packages/games.scm (minetest-data, minetest, retroarch),
gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson),
gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask),
gnu/packages/mail.scm (offlineimap, libetpan),
gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja),
gnu/packages/nutrition.scm (gourmet),
gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf),
gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add
'file-name' field to origin.
2015-02-28 09:49:01 -05:00
865a69ddc8
gnu: Add arpack-ng.
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* gnu/packages/maths.scm (arpack-ng): New variable.
2015-02-20 14:26:48 +01:00
85f4190221
gnu: gmsh: Add glu to inputs.
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* gnu/packages/maths.scm (gmsh): Add glu to inputs.
2014-12-27 11:18:29 -05:00
01480b9e1c
gnu: atlas: Remove MIPS from 'supported-systems'.
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* gnu/packages/maths.scm (atlas): Drop support for "mips64el-linux".
2014-12-08 09:54:34 +01:00
af89a66735
gnu: atlas: Try to fix build on MIPS.
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* gnu/packages/maths.scm (atlas): Add MIPS specific configure flags.
2014-11-23 15:37:29 +01:00
f15615b119
gnu: atlas: Make it non-substitutable.
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Suggested by Federico Beffa <beffa@ieee.org>.
* gnu/packages/maths.scm (atlas)[arguments]: Pass #:substitutable? #f.
[description]: Adjust accordingly.
2014-10-28 10:17:55 +01:00
35b9e4232c
gnu: Some cleanup based on lint checkers.
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* gnu/packages/admin.scm, gnu/packages/aidc.scm, gnu/packages/algebra.scm,
gnu/packages/apr.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm,
gnu/packages/base.scm, gnu/packages/calcurse.scm, gnu/packages/cdrom.scm,
gnu/packages/check.scm, gnu/packages/compression.scm, gnu/packages/cook.scm,
gnu/packages/crypto.scm, gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm,
gnu/packages/doxygen.scm, gnu/packages/dwm.scm, gnu/packages/elf.scm,
gnu/packages/emacs.scm, gnu/packages/feh.scm, gnu/packages/file.scm,
gnu/packages/fish.scm, gnu/packages/flex.scm, gnu/packages/fltk.scm,
gnu/packages/fontutils.scm, gnu/packages/games.scm, gnu/packages/gcal.scm,
gnu/packages/gcc.scm, gnu/packages/geeqie.scm, gnu/packages/ghostscript.scm,
gnu/packages/gimp.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gperf.scm, gnu/packages/grub.scm, gnu/packages/gsasl.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm,
gnu/packages/hurd.scm, gnu/packages/icu4c.scm, gnu/packages/image.scm,
gnu/packages/imagemagick.scm, gnu/packages/irssi.scm, gnu/packages/kde.scm,
gnu/packages/libdaemon.scm, gnu/packages/libevent.scm,
gnu/packages/libidn.scm, gnu/packages/libusb.scm, gnu/packages/linux.scm,
gnu/packages/lout.scm, gnu/packages/lsh.scm, gnu/packages/lsof.scm,
gnu/packages/lua.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm,
gnu/packages/mp3.scm, gnu/packages/netpbm.scm, gnu/packages/noweb.scm,
gnu/packages/ocaml.scm, gnu/packages/openssl.scm, gnu/packages/pcre.scm,
gnu/packages/pdf.scm, gnu/packages/pkg-config.scm,
gnu/packages/pretty-print.scm, gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/rsync.scm, gnu/packages/scheme.scm, gnu/packages/scrot.scm,
gnu/packages/sdl.scm, gnu/packages/skribilo.scm, gnu/packages/ssh.scm,
gnu/packages/stalonetray.scm, gnu/packages/tcl.scm, gnu/packages/tcsh.scm,
gnu/packages/telephony.scm, gnu/packages/texlive.scm, gnu/packages/tor.scm,
gnu/packages/valgrind.scm, gnu/packages/version-control.scm,
gnu/packages/vim.scm, gnu/packages/vpn.scm, gnu/packages/w3m.scm,
gnu/packages/web.scm, gnu/packages/wordnet.scm, gnu/packages/xiph.scm,
gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/packages/zile.scm,
gnu/packages/zip.scm, gnu/packages/zsh.scm [synopsis, description]: Adjust
according to lint checkers.
* gnu/packages/fltk.scm (fltk)[source]: Wrap long line in uri.
* /gnu/packages/xiph.scm (libogg, libtheora, vorbis-tools)[source]: Same.
2014-10-26 13:03:53 -05:00
ec322be248
gnu: Add ATLAS.
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* gnu/packages/maths.scm (atlas): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-10-26 15:16:06 +01:00
3dcd78109c
gnu: pspp: Upgrade to 0.8.4.
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* gnu/packages/maths.scm (pspp): Upgrade to 0.8.4.
2014-10-03 19:52:50 +02:00
182d6311c2
gnu: Add dionysus.
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* gnu/packages/maths.scm (dionysus): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-09-29 00:16:28 +02:00
f36afe4d05
gnu: maxima: Install .el files in the right place, and help find Gnuplot.
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* gnu/packages/maths.scm (maxima): Remove Tcl from 'inputs'. Add
'post-install' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-09-27 11:22:58 +02:00
df354a771d
gnu: maxima: Update to 5.34.1 and add dependencies.
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* gnu/packages/maths.scm (maxima): Update to 5.34.1 which fixes a bug in
the plotting capabilities present in the previous version. Add Gnuplot
and Tcl/Tk to 'inputs'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2014-09-24 09:35:44 +02:00
b5b73a8269
Use #:prefix instead of #:renamer with 'symbol-prefix-proc'.
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* gnu/packages/abiword.scm, gnu/packages/admin.scm, gnu/packages/aidc.scm,
gnu/packages/backup.scm, gnu/packages/bittorrent.scm,
gnu/packages/boost.scm, gnu/packages/compression.scm,
gnu/packages/cryptsetup.scm, gnu/packages/curl.scm,
gnu/packages/cyrus-sasl.scm, gnu/packages/dc.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/geeqie.scm,
gnu/packages/ghostscript.scm, gnu/packages/gimp.scm,
gnu/packages/gkrellm.scm, gnu/packages/gl.scm, gnu/packages/glib.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm,
gnu/packages/gnutls.scm, gnu/packages/gnuzilla.scm, gnu/packages/gsasl.scm,
gnu/packages/gtk.scm, gnu/packages/gv.scm, gnu/packages/image.scm,
gnu/packages/indent.scm, gnu/packages/inkscape.scm,
gnu/packages/lesstif.scm, gnu/packages/links.scm, gnu/packages/lisp.scm,
gnu/packages/lsh.scm, gnu/packages/lsof.scm, gnu/packages/maths.scm,
gnu/packages/mp3.scm, gnu/packages/openssl.scm, gnu/packages/ots.scm,
gnu/packages/pciutils.scm, gnu/packages/pcre.scm, gnu/packages/pdf.scm,
gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/slim.scm,
gnu/packages/ssh.scm, gnu/packages/texlive.scm, gnu/packages/vim.scm,
gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wv.scm,
gnu/packages/xiph.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm,
gnu/packages/yasm.scm, gnu/packages/zip.scm,
guix/build/cmake-build-system.scm, guix/build/perl-build-system.scm,
guix/build/python-build-system.scm, guix/download.scm: Replaces uses of
#:renamer and 'symbol-prefix-proc' with #:prefix.
2014-09-23 18:52:29 -04:00
Eric Bavier