c2808d4c67
Merge branch 'version-0.15.0'
2018-07-06 17:42:25 +02:00
871d819965
gnu: gptfdisk: Update to 1.0.4.
...
* gnu/packages/disk.scm (gptfdisk): Update to 1.0.4.
2018-07-06 14:31:07 +02:00
8694935cc8
gnu: guix: Update to 4876bc8.
2018-07-06 04:52:54 +02:00
4876bc8234
gnu: guix: Update to 0.15.0.
2018-07-06 00:19:01 +02:00
5149aeb7e6
gnu: pigx: Update to 0.0.3.
...
* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.3.
2018-07-05 16:02:48 +02:00
fe44e654b4
gnu: arb: Update to 2.13.0.
...
* gnu/packages/algebra.scm (arb): Update to 2.13.0.
2018-07-05 15:25:37 +02:00
aa388dc7b9
gnu: Add r-rots.
...
* gnu/packages/bioconductor.scm (r-rots): New variable.
2018-07-05 15:08:44 +02:00
f4235c0eca
gnu: Add r-glimma.
...
* gnu/packages/bioconductor.scm (r-glimma): New variable.
2018-07-05 15:08:44 +02:00
5da0e14285
gnu: Add r-goseq.
...
* gnu/packages/bioconductor.scm (r-goseq): New variable.
2018-07-05 15:08:44 +02:00
27c51606ae
gnu: Add r-ctc.
...
* gnu/packages/bioconductor.scm (r-ctc): New variable.
2018-07-05 15:08:44 +02:00
2cc5110832
gnu: Add r-genelendatabase.
...
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
2018-07-05 15:08:44 +02:00
fa69759963
gnu: Add r-argparse.
...
* gnu/packages/cran.scm (r-argparse): New variable.
2018-07-05 15:08:44 +02:00
3629622bc8
gnu: Add r-findpython.
...
* gnu/packages/cran.scm (r-findpython): New variable.
2018-07-05 15:08:44 +02:00
aec7d6be70
gnu: r-getopt: Move from bioinformatics to cran.
...
* gnu/packages/bioinformatics.scm (r-getopt): Move from here...
* gnu/packages/cran.scm (r-getopt): ...to here.
2018-07-05 15:08:44 +02:00
87ba9508e9
gnu: Add r-goplot.
...
* gnu/packages/cran.scm (r-goplot): New variable.
2018-07-05 15:08:44 +02:00
64abd24517
gnu: Add r-biasedurn.
...
* gnu/packages/cran.scm (r-biasedurn): New variable.
2018-07-05 15:08:44 +02:00
fc0e663f78
doc: Improve UEFI/BIOS bootloader documentation.
...
Partly fixes <https://bugs.gnu.org/30312 >.
* doc/guix.texi (Preparing for Installation): Add note on how to choose
between UEFI and BIOS.
(Using the Configuration System)[Bootloader]: New subsubsection.
(Bootloader Configuration): Expound on the bootloader type and target.
* gnu/system/examples/desktop.tmpl: Switch to UEFI.
* gnu/system/examples/bare-bones.tmpl: Explicitly mention "legacy" and
"BIOS" in the comments.
2018-07-05 11:44:46 +02:00
0a562e46ff
gnu: qtox: Update to 1.16.1.
...
* gnu/packages/messaging.scm (qtox): Update to 1.16.1.
2018-07-05 08:35:01 +02:00
ac3accd44b
gnu: emacs-async: Update to 1.9.3.
...
* gnu/packages/emacs.scm (emacs-async): Update to 1.9.3.
[source]: Update URI.
2018-07-05 02:35:04 +02:00
41770337d0
gnu: nml: Update to 0.4.5.
...
* gnu/packages/game-development.scm (nml): Update to 0.4.5.
2018-07-05 02:35:04 +02:00
df0fd7bfe0
gnu: nml: Use HTTPS home page.
...
* gnu/packages/game-development.scm (nml)[home-page]: Use HTTPS.
2018-07-05 02:35:04 +02:00
4294f7dfea
gnu: r-lava: Update to 1.6.2.
...
* gnu/packages/cran.scm (r-lava): Update to 1.6.2.
2018-07-05 02:35:03 +02:00
8144badc76
gnu: r-broom: Update to 0.4.5.
...
* gnu/packages/cran.scm (r-broom): Update to 0.4.5.
2018-07-05 02:35:03 +02:00
6e19d50e32
gnu: r-broom: Use HTTPS home page.
...
* gnu/packages/cran.scm (r-broom)[home-page]: Use HTTPS.
2018-07-05 02:35:03 +02:00
142869f80f
Don't force colour in aliases.
...
* gnu/system/shadow.scm (default-skeletons): Substitute ‘--color=auto’
for ‘--color’ (which implies ‘=always’) in aliases.
* doc/guix.texi (G-Expressions): Also adjust examples as that makes
more sense.
2018-07-05 02:35:03 +02:00
1e6191bb55
gnu: gtkwave: Mark up description.
...
* gnu/packages/fpga.scm (gtkwave)[description]: Use @dfn.
2018-07-05 02:35:02 +02:00
0b04259184
gnu: exempi: Mark up description.
...
* gnu/packages/freedesktop.scm (exempi)[description]: Use @dfn.
2018-07-05 02:35:02 +02:00
fef7f8f692
gnu: keepalived: Update to 2.0.5.
...
* gnu/packages/cluster.scm (keepalived): Update to 2.0.5.
2018-07-05 02:35:02 +02:00
ba8528e759
gnu: inxi: Update to 3.0.14-1.
...
* gnu/packages/admin.scm (inxi-minimal): Update to 3.0.14-1.
2018-07-05 02:35:02 +02:00
d0d0f17768
gnu: linux-libre: Update to 4.17.4.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.17.4.
(%linux-libre-hash): Update hash.
2018-07-04 19:30:19 -04:00
75b27002eb
gnu: linux-libre@4.14: Update to 4.14.53.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.53.
(%linux-libre-4.14-hash): Update hash.
2018-07-04 19:30:17 -04:00
d1b2611d22
gnu: linux-libre@4.9: Update to 4.9.111.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.111.
2018-07-04 19:30:14 -04:00
a6a252e01d
gnu: linux-libre@4.4: Update to 4.4.139.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.139.
2018-07-04 19:30:12 -04:00
cc78392923
gnu: Remove linux-libre@4.1.
...
* gnu/packages/linux.scm (linux-libre-4.1): Remove variable.
* gnu/packages/aux-files/linux-libre/4.1-i686.conf,
gnu/packages/aux-files/linux-libre/4.1-x86_64.conf: Delete files.
* Makefile.am (AUX_FILES): Remove them.
2018-07-04 19:30:06 -04:00
08d1a8b138
gnu: pigx-scrnaseq: Update to 0.0.6.
...
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.6.
[arguments]: Remove "wrap-executable" phase.
2018-07-05 00:52:31 +02:00
a043b5b81a
services: mingetty: Use '--nohangup'.
...
See the discussion at
<https://lists.gnu.org/archive/html/guix-devel/2018-07/msg00049.html >.
* gnu/services/base.scm (mingetty-shepherd-service): Pass "--nohangup"
to mingetty.
2018-07-05 00:14:01 +02:00
9fd877247d
system: Default .bashrc uses '--color=auto' for grep and ls.
...
Reported by Tobias Geerinckx-Rice <me@tobias.gr>
and Björn Höfling <bjoern.hoefling@bjoernhoefling.de>.
* gnu/system/shadow.scm (default-skeletons)["bashrc"]: Use
'--color=auto' instead of '--color'.
2018-07-04 21:52:23 +02:00
137bd98353
gnu: maven: Fix maven crash when compiling java8 code.
...
* gnu/packages/maven.scm (maven)[arguments]: Configure classloading
properly instead of adding jars to maven's classpath.
2018-07-04 21:29:23 +02:00
892a5647de
gnu: maven-compat: Fix test failure.
...
* gnu/packages/maven.scm (maven-compat)[arguments]: Add
recreate-removed-jar phase.
2018-07-04 21:09:56 +02:00
d440df618d
gnu: maven-artifact: Update to 3.5.4.
...
* gnu/packages/maven.scm (maven-artifact): Update to 3.5.4.
(maven-core)[arguments]: Use new version.
2018-07-04 21:08:08 +02:00
8d66cda690
gnu: maven-wagon-provider-api: Update to 3.1.0.
...
* gnu/packages/maven.scm (maven-wagon-provider-api): Update to 3.1.0.
2018-07-04 21:06:24 +02:00
a70182b099
gnu: java-plexus-compiler-api: Update to 2.8.4.
...
* gnu/packages/java.scm (java-plexus-compiler-api): Update to 2.8.4.
2018-07-04 21:05:36 +02:00
42226063f6
vm: Disable KVM on i386.
...
* gnu/build/vm.scm (load-in-linux-vm): Disable KVM on i386.
2018-07-04 15:26:21 +02:00
b53a0c882d
gnu: ledger: Use HTTPS home page URI.
...
* gnu/packages/finance.scm (ledger)[home-page]: Use HTTPS URI.
2018-07-04 18:16:34 +05:30
1f3c4ba8f3
gnu: ledger: Use invoke and fix #t return.
...
* gnu/packages/finance.scm (ledger)[arguments]: Replace system* with invoke in
build-doc phase. Remove #t return from relocate-elisp phase since
emacs-generate-autoloads already returns #t.
2018-07-04 18:13:31 +05:30
948e888d3a
gnu: ledger: Skip failing test.
...
* gnu/packages/finance.scm (ledger)[arguments]: Set #:make-flags to skip
failing test BaselineTest_cmd-org. Replace check phase with the check phase
from gnu-build-system.
2018-07-04 18:11:30 +05:30
d88b29d6b7
gnu: qtox: Update to 1.16.0.
...
* gnu/packages/messaging.scm (qtox): Update to 1.16.0.
2018-07-04 08:57:16 +02:00
5d1a3219d2
gnu: clutter-gtk: Update to 1.8.4.
...
* gnu/packages/gnome.scm (clutter-gtk): Update to 1.8.4.
2018-07-04 02:45:40 +02:00
357d74c025
gnu: totem: Update to 3.26.1.
...
I did not re-enable #:parallel-build? because I was unable to reproduce
the original failure in the first place.
* gnu/packages/gnome.scm (totem): Update to 3.26.1.
2018-07-04 02:45:40 +02:00
5554312b2f
gnu: exempi: Update to 2.4.5.
...
* gnu/packages/freedesktop.scm (exempi): Update to 2.4.5.
2018-07-04 02:45:39 +02:00
55e3e1ceb9
gnu: gtkwave: Update to 3.3.91.
...
* gnu/packages/fpga.scm (gtkwave): Update to 3.3.91.
2018-07-04 02:45:39 +02:00
6f832aa01a
gnu: kicad-library: Update to 4.0.7.
...
* gnu/packages/engineering.scm (kicad-library): Update to 4.0.7.
2018-07-04 02:45:39 +02:00
6c08ea6a5c
gnu: kicad-library: Return #t from phases.
...
* gnu/packages/engineering.scm (kicad-library)[arguments]: Substitute
INVOKE for SYSTEM*.
2018-07-04 02:45:39 +02:00
7d0370ede4
gnu: r-learnr: Update to 0.9.2.1.
...
* gnu/packages/cran.scm (r-learnr): Update to 0.9.2.1.
2018-07-04 02:45:38 +02:00
fab43c6b84
gnu: Add r-loomr.
...
* gnu/packages/bioinformatics.scm (r-loomr): New variable.
2018-07-03 17:58:55 +02:00
3568b8234a
gnu: Add r-itertools.
...
* gnu/packages/cran.scm (r-itertools): New variable.
2018-07-03 17:58:55 +02:00
a51cf16031
gnu: Update stellarium to 0.18.0.
...
[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-06-29T20:39:51+0200 using DSA]]
* gnu/packages/astronomy.scm (stellarium): Update to 0.18.0.
[home-page]: Update URL.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-07-03 17:50:05 +02:00
c1220498b0
gnu: emacs-helm-system-packages: Update to 1.10.0.
...
* gnu/packages/emacs.scm (emacs-helm-system-packages): Update to 1.10.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-07-03 17:50:04 +02:00
53fc7a09f6
gnu: Add pocl.
...
* gnu/packages/opencl.scm (pocl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-07-03 17:50:04 +02:00
3c78f5b5c3
tests: basic: Wait for /var/run/shepherd/socket to be ready.
...
* gnu/tests/base.scm (run-basic-test)["shepherd socket ready"]: New test.
2018-07-03 17:50:04 +02:00
13f5eb3494
gnu: pigx-bsseq: Update to 0.0.10.
...
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.10.
[arguments]: Remove "wrap-executable" phase.
2018-07-03 17:33:51 +02:00
c7d5cd6ca5
gnu: pigx-rnaseq: Update to 0.0.4.
...
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.4.
[arguments]: Remove "wrap-executable" phase.
2018-07-03 16:20:28 +02:00
29cbf8178f
gnu: pigx-chipseq: Update to 0.0.20.
...
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.20.
2018-07-03 16:20:28 +02:00
631bc3a666
gnu: ikiwiki: Include auto setup files in output.
...
* gnu/packages/web.scm(ikiwiki)[arguments]: Add patch-Makefile phase.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03 15:45:41 +02:00
abf3a33178
gnu: emacs-use-package: Update to commit da8c9e2.
...
This update is needed because the release tarball from github does not
contain all the files needed for us to build the package.
* gnu/packages/emacs.scm (emacs-use-package): Update to commit da8c9e2.
[source]: change to git.
[arguments]: Enable tests.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03 15:45:41 +02:00
b5f746d2da
gnu: Add emacs-atom-one-dark-theme.
...
* gnu/packages/emacs.scm (emacs-atom-one-dark-theme): New variable
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-07-03 15:45:41 +02:00
27b73b4999
gnu: libuninameslist: Update to 20180701.
...
* gnu/packages/fontutils.scm (libuninameslist): Update to 20180701.
[source]: Change URI to use release tarball. Remove FILE-NAME.
[native-inputs]: Remove.
2018-07-03 15:45:40 +02:00
b19c92ef7e
gnu: libuninameslist: Correct license.
...
* gnu/packages/fontutils.scm (libuninameslist)[license]: Remove GPL2. Add
BSD-3 and X11-STYLE.
2018-07-03 15:45:40 +02:00
74ba3a6830
gnu: Add vsftpd.
...
* gnu/packages/ftp.scm (vsftpd): New variable.
2018-07-03 15:32:51 +02:00
4786f51576
gnu: vkd3d: Add vulkan-headers.
...
* gnu/packages/vulkan.scm (vkd3d)[inputs]: Add vulkan-headers.
2018-07-03 11:23:47 +02:00
4108886b09
gnu: vkquake: Add vulkan-headers.
...
* gnu/packages/games.scm (vkquake)[inputs]: Add vulkan-headers.
2018-07-03 11:23:47 +02:00
08899ee91b
gnu: mpv: Add vulkan-headers.
...
* gnu/packages/video.scm (mpv)[inputs]: Add vulkan-headers.
2018-07-03 11:23:47 +02:00
b1eb1ba99c
gnu: vulkan-loader: Update to 1.1.77.0.
...
* gnu/packages/vulkan.scm (vulkan-loader): Update to 1.1.77.0.
[inputs]: Add 'vulkan-headers.
[home-page]: Correct URL.
2018-07-03 11:23:47 +02:00
cf09bed4f5
gnu: Add vulkan-headers.
...
* gnu/packages/vulkan.scm (vulkan-headers): New variable.
2018-07-03 11:23:47 +02:00
940c2c5c14
gnu: openrct2: Update to 0.2.0.
...
* gnu/packages/games.scm (openrct2): Update to 0.2.0.
[configure-flags]: Add -DDOWNLOAD_OBJECTS=OFF configure flag.
[arguments]: Add 'fixgcc7, 'get-rid-of-errors phases.
[native-inputs]: Add gcc@7.
2018-07-03 11:01:21 +02:00
fab8d41c64
gnu: dolphin-emu: Update to commit 806c1ee.
...
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 806c1ee.
[source]: Don't delete removed externals.
[arguments]: Remove unused variables.
[inputs]: Add 'pugixml. Remove 'wxwidgets-gtk2-3.1.
2018-07-03 09:13:55 +02:00
a6a2ef27a3
gnu: Add keynav.
...
* gnu/packages/xorg.scm (keynav): New variable.
2018-07-03 07:29:30 +03:00
6104f922ee
gnu: units: Update to 2.17.
...
* gnu/packages/maths.scm (units): Update to 2.17.
2018-07-02 21:12:55 -04:00
673135df30
gnu: icedtea Work around gcc segfault.
...
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add icedtea-7
patch to hotspot.
2018-07-03 02:07:14 +02:00
86163a017b
gnu: libgit2: Update to 0.26.4 [fixes CVE-2018-11235].
...
* gnu/packages/version-control.scm (libgit2): Update to 0.26.4.
(source): Adjust patch name.
* gnu/packages/patches/libgit2-0.25.1-mtime-0.patch: Rename to ...
* gnu/packages/patches/libgit2-mtime-0.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-07-02 19:47:46 -04:00
db024183c9
gnu: icedtea: Work around gcc segfault.
...
* gnu/packages/java.scm (icedtea-7)[native-inputs]: Add patch to hotspot.
* gnu/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-03 00:53:56 +02:00
c729901583
gnu: python-duniterpy: Change module.
...
* gnu/packages/python-crypto.scm (python-duniterpy): Move...
* gnu/packages/finance.scm: ... here.
2018-07-02 23:27:07 +02:00
929d4d2f4a
gnu: python-pylibscrypt: Improve speed.
...
* gnu/packages/python-crypto.scm (python-pylibscrypt): Use "libscrypt"
implementation instead of "openssl".
"hashlib.scrypt" requires Python 3.6+ and OpenSSL 1.1+. Since Python is built
with OpenSSL 1.0, the library is unavailable. "pylibscrypt" defaults to a slow
pure Python implementation. Instead, rely on the much faster "libscrypt".
2018-07-02 23:12:40 +02:00
84be0e9a74
gnu: Add libscrypt.
...
* gnu/packages/crypto.scm (libscrypt): New variable.
2018-07-02 23:12:14 +02:00
2926e950ce
gnu: Add freedink-dfarc.
...
* gnu/packages/games.scm (freedink-dfarc): New variable.
2018-07-02 14:42:36 -04:00
63e708f468
gnu: bambam: Don't use unstable tarball.
...
* gnu/packages/games.scm (bambam)[source]: Use GIT-FETCH.
2018-07-02 20:19:08 +02:00
a62764bdbb
gnu: zstd: Update to 1.3.5.
...
* gnu/packages/compression.scm (zstd): Update to 1.3.5.
[source]: Add two patches to make the test suite pass.
* gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch,
gnu/packages/patches/zstd-fix-stdin-list-test.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add both.
2018-07-02 20:19:07 +02:00
8ef7ecf469
gnu: acpica: Update to 20180629.
...
* gnu/packages/admin.scm (acpica): Update to 20180629.
2018-07-02 20:19:07 +02:00
595d1bd517
gnu: Remove duplicate imports from (gnu packages graphics).
...
* gnu/packages/graphics.scm (define-module): Remove duplicate module
imports. Order the remainers alphabetically.
2018-07-02 20:19:07 +02:00
4ef3490d44
gnu: bambam: Update to 0.6.
...
* gnu/packages/games.scm (bambam): Update to 0.6.
2018-07-02 20:19:06 +02:00
e402a66b07
gnu: teeworlds: Add missing dependency.
...
* gnu/packages/games.scm (teeworlds)[native-inputs]: Add pkg-config.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2018-07-02 18:46:43 +02:00
730553d715
gnu: Add silkaj.
...
* gnu/packages/finance.scm (silkaj): New variable.
2018-07-02 17:50:20 +02:00
1fa1d822fa
gnu: Add python-scrypt.
...
* gnu/packages/python-crypto.scm (python-scrypt): New variable.
2018-07-02 17:50:20 +02:00
2cde6e1de3
gnu: Add python-commandlines.
...
* gnu/packages/python.scm (python-commandlines): New variable.
2018-07-02 17:50:20 +02:00
2cc63e6fcf
gnu: java-hamcrest-all: Add java-hamcrest-core to inputs.
...
Fixes <https://debbugs.gnu.org/31390 >, probably.
* gnu/packages/java.scm (java-hamcrest-all)[inputs]: Add java-hamcrest-core.
[arguments]: Add java-hamcrest-core to the build-time classpath.
2018-07-02 16:48:03 +02:00
96b2b0ddc9
gnu: guile: Add version 2.2.4.
...
* gnu/packages/guile.scm (guile-2.2.4): New variable.
2018-07-02 15:28:35 +02:00
1cdff8cdb7
gnu: icedtea: Work around gcc segfault.
...
* gnu/packages/java.scm (icedtea-6)[arguments]: Modify phases to extract
hostspot, as after the patching it becomes an archive.
[native-inputs]: add patch to hotspot-src.
* gnu/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-07-02 14:41:27 +02:00
79f9b054df
Revert "gnu: icedtea-7: Build with gcc-4.9."
...
This reverts commit bc73f673e8
2018-07-02 14:39:12 +02:00
92af3ce417
Merge branch 'master' into staging
2018-07-02 12:18:58 +02:00
6e65eb3cad
gnu: cdogs-sdl: Update to 0.6.7.
...
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.7.
[source]: Use version tag.
2018-07-02 00:45:19 +02:00
Ludovic Courtès