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31300 Commits

Author SHA1 Message Date
Ben Woodcroft 53ec1b7e8b
gnu: vsearch: Update to 2.8.0. 
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.8.0.
 2018-04-27 23:20:00 +10:00
Ben Woodcroft 171cf56c2f
gnu: diamond: Update to 0.9.21. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.21.
 2018-04-27 23:20:00 +10:00
Ricardo Wurmus a6334e6e8d
gnu: emacs-websocket: Update to 1.10. 
* gnu/packages/emacs.scm (emacs-websocket): Update to 1.10.
[source]: Fetch from git.
 2018-04-27 13:32:40 +02:00
Ricardo Wurmus 8e71673d2f
gnu: r-robustbase: Update to 0.93-0. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-0.
 2018-04-27 13:30:43 +02:00
Ricardo Wurmus 5ce901d59a
gnu: r-r-oo: Update to 1.22.0. 
* gnu/packages/statistics.scm (r-r-oo): Update to 1.22.0.
 2018-04-27 13:30:43 +02:00
Ricardo Wurmus 97dbc684c8
gnu: r-foreign: Update to 0.8-70. 
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-70.
 2018-04-27 13:30:43 +02:00
Ricardo Wurmus 7f77e5d5fa
gnu: r-metap: Update to 0.9. 
* gnu/packages/cran.scm (r-metap): Update to 0.9.
 2018-04-27 13:30:43 +02:00
Ricardo Wurmus d4dee0804a
gnu: r-pillar: Update to 1.2.2. 
* gnu/packages/cran.scm (r-pillar): Update to 1.2.2.
 2018-04-27 13:30:43 +02:00
Ricardo Wurmus deb4894405
gnu: emacs-slack: Update to 0-4.d903954. 
* gnu/packages/emacs.scm (emacs-slack): Update to 0-4.d903954.
 2018-04-27 13:29:48 +02:00
Chris Marusich a654d3debd
services: Set default <dhcpd-configuration> version to "4". 
* gnu/services/networking.scm (<dhcpd-configuration>) <version>: Set the
default to "4" instead of "6"; both our manual and upstream says the default
should be "4".
 2018-04-27 01:39:28 -07:00
Tobias Geerinckx-Rice 2216b6f410
gnu: thefuck: Use INVOKE. 
* gnu/packages/admin.scm (thefuck)[arguments]: Substitute INVOKE for
SYSTEM* and end phase with explicit #t.
 2018-04-27 05:36:55 +02:00
Tobias Geerinckx-Rice 3290f10773
gnu: thefuck: Update to 3.26. 
* gnu/packages/admin.scm (thefuck): Update to 3.26.
 2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice d11edbdf7d
gnu: infamous-plugins: Update to 0.2.04. 
* gnu/packages/audio.scm (infamous-plugins): Update to 0.2.04.
 2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice a9071e5c51
gnu: infamous-plugins: Use HTTPS home page. 
* gnu/packages/audio.scm (infamous-plugins)[home-page]: Use HTTPS.
 2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice 7adaf5b5ad
gnu: drumstick: Update to 1.1.1. 
* gnu/packages/music.scm (drumstick): Update to 1.1.1.
[inputs]: Remove fluidsynth.
 2018-04-27 05:36:54 +02:00
Tobias Geerinckx-Rice 5346d91523
gnu: mpd: Update to 0.20.19. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.19.
 2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 53c475d104
gnu: tuxguitar: Update to 1.5. 
* gnu/packages/music.scm (tuxguitar): Update to 1.5.
 2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice d4eae3f7d2
gnu: tuxguitar: Update home page. 
The tuxguitar.pw domain is infested with squatters.

* gnu/packages/music.scm (tuxguitar)[home-page]: Update.
 2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 15fc96e073
gnu: perl-clone: Update to 0.39. 
* gnu/packages/perl.scm (perl-clone): Update to 0.39.
 2018-04-27 05:36:53 +02:00
Tobias Geerinckx-Rice 54c3b7bf66
gnu: perl-strictures@2: Update to 2.000004. 
* gnu/packages/perl.scm (perl-strictures-2): Update to 2.000004.
 2018-04-27 05:36:52 +02:00
Eric Bavier adfc742c42
gnu: ranger: Fix description and tests. 
* gnu/packages/disk.scm (ranger)[arguments]: Replace '#:phases' with
'#:test-target'.
[description]: Remove texinfo markup.  'VI' -> 'Vi'.
 2018-04-26 21:08:23 -05:00
Eric Bavier 834b0b9a5c
gnu: Add Ranger. 
* gnu/packages/disk.scm (ranger): New variable.
 2018-04-26 20:54:18 -05:00
Eric Bavier e7323f4c08
gnu: mumps: Update to 5.1.2. 
* gnu/packages/maths.scm (mumps): Update to 5.1.2.
 2018-04-26 20:54:18 -05:00
Eric Bavier d98e9009a9
gnu: scotch: Update to 6.0.5a. 
* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files.
* gnu/packages/patches/scotch-build-parallelism.patch,
gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (scotch): Update to 6.0.5a.
[source](patches): Adjust accordingly.
 2018-04-26 20:54:18 -05:00
Tobias Geerinckx-Rice c2e76b7082
gnu: darktable: Update to 2.4.3. 
* gnu/packages/photo.scm (darktable): Update to 2.4.3.
 2018-04-27 03:11:50 +02:00
Tobias Geerinckx-Rice 5b292eac73
gnu: quassel: Use HTTPS home page. 
* gnu/packages/irc.scm (quassel)[home-page]: Use HTTPS.
 2018-04-27 02:56:45 +02:00
Tobias Geerinckx-Rice 72dae07296
gnu: quassel: Update to 0.12.5. 
* gnu/packages/irc.scm (quassel): Update to 0.12.5.
[source]: Remove patch.
* gnu/packages/patches/quassel-fix-tls-check.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice 1c51b7b4bc
gnu: libetonyek: Update to 0.1.8. 
gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.8.
 2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice fb9232d717
gnu: cpuid: Update to 20180419. 
* gnu/packages/linux.scm (cpuid): Update to 20180419.
 2018-04-27 02:56:44 +02:00
Tobias Geerinckx-Rice ca2158bb3a
gnu: pcmanfm: Update to 1.3.0. 
* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0.
[source]: Remove patch.
* gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice d5db813b38
gnu: libfm: Update to 1.3.0. 
* gnu/packages/lxde.scm (libfm): Update to 1.3.0.
 2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice 6a4c7d311a
gnu: perl-log-any-adapter-log4perl: Update to 0.09. 
* gnu/packages/perl.scm (perl-log-any-adapter-log4perl): Update to 0.09.
[source]: Update maintainer URI.
 2018-04-27 02:56:43 +02:00
Tobias Geerinckx-Rice e1612fb59c
gnu: perl-safe-isa: Update to 1.000010. 
* gnu/packages/perl.scm (perl-safe-isa): Update to 1.000010.
 2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice c3a17ab7af
gnu: perl-sub-quote: Update to 2.005001. 
* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001.
 2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 9b8e38ae3d
gnu: perl-capture-tiny: Update to 0.48. 
* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48.
 2018-04-27 02:56:42 +02:00
Tobias Geerinckx-Rice 085a95a71c
gnu: perl-b-hooks-endofscope: Update to 0.24. 
* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 9960ed6291
gnu: perl-file-sharedir-install: Update to 0.13. 
* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice a7999e2d63
gnu: perl-test-notabs: Update to 2.02. 
* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02.
 2018-04-27 02:56:41 +02:00
Tobias Geerinckx-Rice 93a554a0d9
gnu: python-simplejson: Update to 3.14.0. 
* gnu/packages/python.scm (python-simplejson): Update to 3.14.0.
 2018-04-27 02:56:40 +02:00
Tobias Geerinckx-Rice e3e74e4022
gnu: python2-ndg-httpsclient: Fix build. 
This might be a follow-up to a39cc01632
from 2016, which would be neat.

* gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use
SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests.
 2018-04-27 02:56:17 +02:00
Christopher Lemmer Webber ae9877fed3
gnu: paperkey: Update to 1.5. 
* gnu/packages/gnupg.scm (paperkey): Update to 1.5.
 2018-04-26 19:11:27 -05:00
Roel Janssen b43a9eb361
gnu: bedops: Update to 2.4.33. 
* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33.
 2018-04-27 01:11:57 +02:00
Roel Janssen c829c5ea85
gnu: samtools: Update to 1.8. 
* gnu/packages/bioinformatics.scm (samtools): Update to 1.8.
 2018-04-27 01:11:47 +02:00
Roel Janssen cbd9f91c32
gnu: bcftools: Update to 1.8. 
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8.
* gnu/local.mk: Remove patch.
* gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file.
 2018-04-27 01:11:42 +02:00
Roel Janssen 8df0267ad4
gnu: htslib: Update to 1.8. 
* gnu/packages/bioinformatics.scm (htslib): Update to 1.8.
 2018-04-27 01:11:24 +02:00
Leo Famulari 16ef3368da
gnu: PackageKit: Update to 1.1.10 [fixes CVE-2018-1106]. 
* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.10.
 2018-04-26 16:10:54 -04:00
Alex Kost 1f22a544c2
gnu: emacs-magit-popup: Update to 2.12.3. 
* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.3.
 2018-04-26 23:03:51 +03:00
Alex Kost cec021d16a
gnu: emacs-with-editor: Update to 2.7.2. 
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.7.2.
 2018-04-26 23:03:51 +03:00
Alex Kost e9c3a780d1
gnu: geiser: Update to 0.10. 
* gnu/packages/emacs.scm (geiser): Update to 0.10.
 2018-04-26 23:03:51 +03:00
Leo Famulari 205044b9c1
gnu: python-josepy: Update to 1.1.0. 
* gnu/packages/python-crypto.scm (python-josepy, python2-josepy): Update
to 1.1.0.
 2018-04-26 15:41:40 -04:00