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25188 Commits

Author SHA1 Message Date
Roel Janssen 6d09a7b5ec
gnu: virtuoso-ose: Unbundle zlib and build with readline support. 
* gnu/packages/databases.scm (virtuoso-ose):
  [inputs]: Add zlib, and readline;
  [arguments]: Add --without-internal-zlib, and --with-readline.
 2018-04-03 13:07:21 +02:00
Kyle Meyer d3d576616c
gnu: emacs-helm-swoop: Update to 1.7.4. 
* gnu/packages/emacs.scm (emacs-helm-swoop): Update to 1.7.4.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-04-03 12:43:26 +02:00
Kyle Meyer e0b0cafdea
gnu: emacs-helm: Update to 2.9.0. 
* gnu/packages/emacs.scm (emacs-helm): Update to 2.9.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-04-03 12:43:23 +02:00
Kyle Meyer 4fca8a028e
gnu: emacs-elfeed: Update to 2.3.0. 
* gnu/packages/emacs.scm (emacs-elfeed): Update to 2.3.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-04-03 12:43:20 +02:00
Marius Bakke 5c151862c2
gnu: git: Update to 2.17.0. 
* gnu/packages/version-control.scm (git): Update to 2.17.0.
[arguments]: Remove obsolete substitution.
 2018-04-03 12:21:29 +02:00
Marius Bakke fc8c229f14
gnu: perl-mailtools: Update to 2.20. 
* gnu/packages/perl.scm (perl-mailtools): Update to 2.20.
 2018-04-03 12:15:58 +02:00
Tobias Geerinckx-Rice 426916b7a0
gnu: python-oslotest: Update to 3.4.0. 
* gnu/packages/openstack.scm (python-oslotest): Update to 3.4.0.
 2018-04-03 11:17:34 +02:00
Tobias Geerinckx-Rice 3cc7d54262
gnu: python-libvirt: Update to 4.1.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 4.1.0.
 2018-04-03 11:17:34 +02:00
Tobias Geerinckx-Rice 35d56c1cbb
gnu: libvirt: Update to 4.2.0. 
* gnu/packages/virtualization.scm (libvirt): Update to 4.2.0.
[native-inputs]: Replace python-2 with python (@3).
 2018-04-03 11:17:34 +02:00
Sahithi Yarlagadda 82c8e0ae0a
gnu: Add r-abc. 
* gnu/packages/cran.scm (r-abc): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-04-02 23:25:39 +02:00
Nicolas Goaziou b3891a25f8
gnu: musescore: Update to 2.2. 
* gnu/packages/music.scm (musescore): Update to 2.2.
[arguments]: Use new flag for freetype and remove corresponding fix.  Prevent
downloading sound fonts during installation.
[inputs]: Add portmidi.
 2018-04-02 23:21:13 +02:00
Nicolas Goaziou a374d9c9b0
gnu: portmidi: Create "libporttime.so" symlink. 
* gnu/packages/music.scm (portmidi): Add an `add-portime' phase.
 2018-04-02 23:20:07 +02:00
Ludovic Courtès b948c04745
gnu: cuirass: Update to f090c0f. 
* gnu/packages/ci.scm (cuirass): Update to f090c0f.
 2018-04-02 23:16:30 +02:00
Ludovic Courtès 576f245c2d
gnu: guile-git: Update to 36f93c1. 
* gnu/packages/guile.scm (guile-git): Update to 36f93c1.
 2018-04-02 23:16:30 +02:00
Sahithi Yarlagadda 2a27c0bbb8
gnu: Add r-abc-data. 
* gnu/packages/cran.scm (r-abc-data): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-04-02 23:13:17 +02:00
Leo Famulari 7edb3e50ae
gnu: libressl: Update to 2.7.2. 
* gnu/packages/tls.scm (libressl): Update to 2.7.2.
 2018-04-02 15:11:47 -04:00
Leo Famulari e34977327d
gnu: botan: Update to 2.5.0. 
* gnu/packages/crypto.scm (botan): Update to 2.5.0.
[arguments]: Remove 'fix-rst2man-invocation' phase.
 2018-04-02 15:11:44 -04:00
Christopher Lemmer Webber 75afbd2478
gnu: racket: Patch xform compilation errors. 
* gnu/packages/patches/gnu/packages/patches/racket-fix-xform-issue.patch:
Renamed from gnu/packages/patches/racket-minus_zero_p-disable-xform.patch.
Switch to upstream patch in Racket.
* gnu/packages/scheme.scm (racket): Update to renamed patch.
 2018-04-02 10:38:08 -05:00
Christopher Lemmer Webber 02283a6130
gnu: racket: Update to 6.12. 
* gnu/packages/patches/racket-minus_zero_p-disable-xform.patch: New file.
* gnu/packages/scheme.scm (racket): Update version and patch.
 2018-04-02 10:38:08 -05:00
Marius Bakke 35b3135f5d
gnu: notmuch: Update to 0.26.1. 
* gnu/packages/mail.scm (notmuch): Update to 0.26.1.
 2018-04-02 17:04:28 +02:00
Marius Bakke e3bb89a9b7
gnu: re2: Update to 2018-04-01. 
* gnu/packages/regex.scm (re2): Update to 2018-04-01.
 2018-04-02 17:04:28 +02:00
Marius Bakke 1b362016bc
gnu: libconfig: Update to 1.7.2. 
* gnu/packages/textutils.scm (libconfig): Update to 1.7.2.
[home-page]: Update to new home.
[source](uri): Adjust accordingly.
 2018-04-02 17:04:27 +02:00
Leo Famulari 620ab3a50c
gnu: borg: Update to 1.1.5. 
* gnu/packages/backup.scm (borg): Update to 1.1.5.
[arguments]: Allow a more recent msgpack in an 'adjust-msgpack-dependency'
phase.
 2018-04-01 22:47:14 -04:00
Marius Bakke 66939d59ed
gnu: mujs: Update to 1.0.3. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.3.
 2018-04-02 03:10:13 +02:00
Marius Bakke 48e481b563
gnu: newsboat: Update to 2.11.1. 
* gnu/packages/syndication.scm (newsboat): Update to 2.11.1.
 2018-04-02 03:10:13 +02:00
Mark H Weaver 2e1e540c53
gnu: linux-libre: Update to 4.15.15. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.15.
(%linux-libre-hash): Update hash.
 2018-04-01 18:05:24 -04:00
Mark H Weaver 4d7f14e6e4
gnu: linux-libre@4.14: Update to 4.14.32. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.32.
(%linux-libre-4.14-hash): Update hash.
 2018-04-01 18:04:40 -04:00
Mark H Weaver a79d8cdd57
gnu: linux-libre@4.9: Update to 4.9.92. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.92.
 2018-04-01 18:04:08 -04:00
Mark H Weaver e615459c99
gnu: linux-libre@4.4: Update to 4.4.126. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.126.
 2018-04-01 18:03:30 -04:00
Tobias Geerinckx-Rice bca1bec5df
gnu: libsecret: Update to 0.18.6. 
* gnu/packages/gnome.scm (libsecret): Update to 0.18.6.
 2018-04-01 00:10:18 +02:00
Tobias Geerinckx-Rice 370ae985f0
gnu: emacs-git-modes: Update to 1.2.7. 
* gnu/packages/emacs.scm (git-modes): Update to 1.2.7.
 2018-04-01 00:10:18 +02:00
Tobias Geerinckx-Rice 811b42b2d5
gnu: python-cryptography, python-cryptography-vectors: Update to 2.2.2. 
* gnu/packages/python-crypto.scm (python-cryptography)
(python-cryptography-vectors): Update to 2.2.2.
 2018-04-01 00:10:17 +02:00
Ludovic Courtès 9c57502342
gnu: libgnomeui: Avoid store file names in patch. 
This placates 'assert-no-store-file-names', which would prevent
'make dist' from succeeding.

* gnu/packages/patches/libgnomeui-utf8.patch: Replace store file names
with ellipses.
 2018-03-31 23:30:51 +02:00
Leo Famulari fdc5d7ab52
gnu: mutt: Update to 1.9.4. 
* gnu/packages/mail.scm (mutt): Update to 1.9.4.
 2018-03-31 15:47:51 -04:00
Kei Kebreau 36ce25f092
gnu: Add qtoctave. 
* gnu/packages/maths.scm (qtoctave): New variable.
 2018-03-31 14:05:25 -04:00
Kei Kebreau ab5f3f2131
gnu: octave: Add audio and more sparse matrix support. 
* gnu/packages/maths.scm (octave)[inputs]: Add suitesparse, libsndfile,
portaudio and alsa-lib.
 2018-03-31 14:05:16 -04:00
rsiddharth 42469226c1
gnu: Add ghc-yesod. 
* gnu/packages/haskell-web.scm (ghc-yesod): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:38 +02:00
rsiddharth 98889149f9
gnu: ghc-conduit-extra: Update to 1.1.14. 
* gnu/packages/haskell.scm (ghc-conduit-extra): Update to 1.1.14.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:37 +02:00
rsiddharth 6faa30c17c
gnu: Add ghc-yesod-form. 
* gnu/packages/haskell-web.scm (ghc-yesod-form): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:34 +02:00
rsiddharth b50e1c8925
gnu: Add ghc-email-validate. 
* gnu/packages/haskell.scm (ghc-email-validate): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:31 +02:00
rsiddharth d199274194
gnu: Add ghc-yesod-persistent. 
* gnu/packages/haskell-web.scm (ghc-yesod-pesistent): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:22 +02:00
rsiddharth fb812d6cff
gnu: ghc-psqueues: Disable tests. 
* gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Set #:tests? to #f.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:28:10 +02:00
rsiddharth fc3ef1e28c
gnu: ghc-math-functions: Disable tests. 
* gnu/packages/haskell.scm (ghc-math-functions)[arguments]: Set #:tests? to #f.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:58 +02:00
rsiddharth e01a8fcca4
gnu: Add ghc-persistent-sqlite. 
* gnu/packages/haskell.scm (ghc-persistent-sqlite): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:49 +02:00
rsiddharth e85c58edf9
gnu: Add ghc-unliftio. 
* gnu/packages/haskell.scm (ghc-unliftio): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:45 +02:00
rsiddharth 82e0b0e23f
gnu: Add ghc-microlens-th. 
* gnu/packages/haskell.scm (ghc-microlens-th): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:43 +02:00
rsiddharth 1c225fabd6
gnu: Add ghc-microlens. 
* gnu/packages/haskell.scm (ghc-microlens): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:41 +02:00
rsiddharth d5c34f9b18
gnu: Add ghc-unliftio-core. 
* gnu/packages/haskell.scm (ghc-unliftio-core): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:40 +02:00
rsiddharth 8434594d6d
gnu: Add ghc-persistent-template. 
* gnu/packages/haskell.scm (ghc-persistent-template): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:38 +02:00
rsiddharth 0f163f653e
gnu: Add ghc-aeson-compat. 
* gnu/packages/haskell.scm (ghc-aeson-compat): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:36 +02:00
rsiddharth 104e179d56
gnu: Add ghc-persistent. 
* gnu/packages/haskell.scm (ghc-persistent): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:34 +02:00
rsiddharth b6d8ea42a3
gnu: Add ghc-http-api-data. 
* gnu/packages/haskell.scm (ghc-http-api-data): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:32 +02:00
rsiddharth c56a30b3ba
gnu: Add ghc-time-locale-compat. 
* gnu/packages/haskell.scm (ghc-time-locale-compat): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:30 +02:00
rsiddharth 8ecefe72c1
gnu: Add ghc-uri-bytestring. 
* gnu/packages/haskell.scm (ghc-uri-bytestring): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:28 +02:00
rsiddharth e99bd15cbb
gnu: Add ghc-generics-sop. 
* gnu/packages/haskell.scm (ghc-generics-sop): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:26 +02:00
rsiddharth ff7dd11f0a
gnu: Add ghc-th-lift-instances. 
* gnu/packages/haskell.scm
(ghc-th-lift-instances): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:23 +02:00
rsiddharth ac7cdb40ab
gnu: Add ghc-attoparsec-iso8601. 
* gnu/packages/haskell.scm (ghc-attoparsec-iso8601): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:21 +02:00
rsiddharth d96a1bfe2b
gnu: Add ghc-resource-pool. 
* gnu/packages/haskell.scm (ghc-resource-pool): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:18 +02:00
rsiddharth aebe9d2556
gnu: Add ghc-yesod-core. 
* gnu/packages/haskell-web.scm (ghc-yesod-core): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:27:09 +02:00
rsiddharth 15b9ce634c
gnu: Add ghc-clientsession. 
* gnu/packages/haskell-web.scm (ghc-clientsession): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:58 +02:00
rsiddharth 7565a30893
gnu: Add ghc-cprng-aes. 
* gnu/packages/haskell-crypto.scm (ghc-cprng-aes): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:53 +02:00
rsiddharth 13c281672d
gnu: Add ghc-crypto-random. 
* gnu/packages/haskell-crypto.scm (ghc-crypto-random): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:50 +02:00
rsiddharth d91acee78f
gnu: Add ghc-cipher-aes. 
* gnu/packages/haskell-crypto.scm (ghc-cipher-aes): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:19 +02:00
rsiddharth 47a6582b12
gnu: Add ghc-crypto-cipher-tests. 
* gnu/packages/haskell-check.scm
(ghc-crypto-cipher-tests): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:04 +02:00
rsiddharth aab6df5b63
gnu: Add ghc-crypto-cipher-types. 
* gnu/packages/haskell-crypto.scm
(ghc-crypto-cipher-types): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:26:00 +02:00
rsiddharth 54f3536d55
gnu: Add ghc-securemem. 
* gnu/packages/haskell.scm (ghc-securemem): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:25:50 +02:00
rsiddharth 122260b390
gnu: Add ghc-skein. 
* gnu/packages/haskell-web.scm (ghc-skein): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:25:44 +02:00
rsiddharth 448d6226e3
gnu: Add ghc-path-pieces. 
* gnu/packages/haskell-web.scm (ghc-path-pieces): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:25:40 +02:00
rsiddharth b2b4575dca
gnu: Add ghc-shakespeare. 
* gnu/packages/haskell.scm (ghc-shakespeare): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:25:33 +02:00
rsiddharth fe9b5eff7b
gnu: Add ghc-monad-logger. 
* gnu/packages/haskell.scm (ghc-monad-logger): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:25:25 +02:00
rsiddharth fddb41f22b
gnu: Add ghc-monad-loops. 
* gnu/packages/haskell.scm (ghc-monad-loops): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:24:44 +02:00
rsiddharth bb87be09a9
gnu: Add ghc-stm-chans. 
* gnu/packages/haskell.scm (ghc-stm-chans): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:24:37 +02:00
rsiddharth d6e559ab29
gnu: ghc-chunked-data: Update inputs. 
* gnu/packages/haskell.scm (ghc-chunked-data)[inputs]: Add ghc-text.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:24:10 +02:00
Sohom Bhattacharjee 62d1105c88
gnu: Add emacs-anzu. 
* gnu/packages/emacs.scm (emacs-anzu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-31 19:23:11 +02:00
Rutger Helling 2ac9f2a2b3
gnu: wine-staging: Update to 3.5. 
* gnu/packages/wine.scm (wine-staging): Update to 3.5.
 2018-03-31 09:16:24 +02:00
Rutger Helling 5125b3d5b0
gnu: wine-staging-patchset-data: Update to 3.5. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.5.
 2018-03-31 09:16:24 +02:00
Nils Gillmann f5fa1bdc1a
gnu: python-pycanberra: Update to new upstream location. 
* gnu/packages/libcanberra (python-pycanberra)[source]: Use new URL.
[home-page]: Change to new URL.

Signed-off-by: Nils Gillmann <ng0@n0.is>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-30 23:42:07 +02:00
Pierre Neidhardt abc4a3325e
gnu: Add pinentry-emacs. 
* gnu/packages/gnupg.scm (pinentry-emacs): New variable.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-30 23:42:07 +02:00
Mark H Weaver dffd077c59
gnu: linux-libre: Update to 4.15.14. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.14.
(%linux-libre-hash): Update hash.
 2018-03-30 17:33:55 -04:00
Mark H Weaver cd3a0bcd1d
gnu: linux-libre@4.14: Update to 4.14.31. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.31.
(%linux-libre-4.14-hash): Update hash.
 2018-03-30 17:33:09 -04:00
Mark H Weaver ce484f1e09
gnu: linux-libre@4.9: Update to 4.9.91. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.91.
 2018-03-30 17:32:35 -04:00
Mark H Weaver e67512df40
gnu: linux-libre@4.4: Update to 4.4.125. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.125.
 2018-03-30 17:32:02 -04:00
Mark H Weaver 619d7bffa0
gnu: linux-libre@4.1: Update to 4.1.51. 
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.51.
 2018-03-30 17:31:15 -04:00
Julien Lepiller a7baa201cb
gnu: Update php to 7.2.4. 
* gnu/packages/php.scm (php): Update to 7.2.4.
 2018-03-30 23:22:18 +02:00
Ricardo Wurmus 4bd8a9d8e2
gnu: Define ao. 
This is a follow-up to commit 28f4d56dd3.

* gnu/packages/engineering.scm (ao): Restore variable definition.
 2018-03-30 22:54:51 +02:00
Ricardo Wurmus 28f4d56dd3
gnu: ao: Update to 0-2.9d857d1. 
* gnu/packages/engineering.scm (ao): Rename...
(libfive): ...to this new variable; update to 0-2.9d857d1.
[inputs]: Remove glfw, libepoxy, glm, guile-2.0; add qtbase, guile-2.2.
[home-page]: Use new libfive home page.
[description]: Adjust.
(ao): Redefine using 'deprecated-package'.
 2018-03-30 22:23:43 +02:00
Nicolas Goaziou 2d19a7e4f4
gnu: emacs-org: Change source and naming scheme. 
* gnu/packages/emacs.scm (emacs-org): Switch back to ELPA.  Adopt its naming
  scheme.
 2018-03-30 20:03:36 +02:00
Nicolas Goaziou 5ecd2d28d0
gnu: emacs-org-contrib: Fix build. 
* gnu/packages/emacs.scm (emacs-org-contrib): Update SHA256.
[version]: Add keyword.
[arguments]: Use new keyword.
 2018-03-30 20:03:31 +02:00
Roel Janssen fdc306879b
gnu: Add delly. 
* gnu/packages/bioinformatics.scm (delly): New variable.
* gnu/packages/patches/delly-use-system-libraries.patch: New file.
* gnu/local.mk: Include delly-use-system-libraries.patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-30 10:48:01 -04:00
Roel Janssen 183ce98849
gnu: Add r-regioner. 
* gnu/packages/bioconductor.scm (r-regioner): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-30 10:47:57 -04:00
Nikolai Merinov f342bb58fe
gnu: rust: Update rust to 1.24.1. 
* gnu/packages/rust.scm (rust-bootstrap): Freeze bootstrap version to 1.22.1.
Reorganize bootstrap binaries to match new "rust" package structure with two
ouputs "out" with Rust compiler and "cargo" with Cargo package manager.
Replace all "system*" by "invoke".
(rust-1.23): Rename "rustc" to "rust".  Update sha256 for tarball.  Add cargo
related dependencies.  Install "cargo" as separate "rust" output.  Remove
substitutes for parts that were fixed in "rustc" source code.  Install
documentation to separate "doc" output.  Update configuration according to
changes in "rustc" source code.  Replace all "system*" by "invoke".
(rust): Create package for 1.24.1 rust release based on rust-1.23 release.
* guix/build-system/cargo.scm (default-rust): Replace "default-cargo" and
"default-rustc" functions with "default-rust" function.
(cargo-build-system): Take only one package as "rust" source.  Use "rustc" of
default output of "rust" package, use "cargo" as "cargo" output of "rust"
package.
 2018-03-30 15:46:53 +02:00
Ben Woodcroft 8456a4c5cb
gnu: ruby-2.2: Update to 2.2.10. 
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.10.
 2018-03-30 12:27:57 +10:00
Ben Woodcroft 049edeb24c
gnu: ruby-2.3: Update to 2.3.7. 
* gnu/packages/ruby.scm (ruby-2.3): Update to 2.3.7.
 2018-03-30 12:24:59 +10:00
Ben Woodcroft f38ac742e6
gnu: mash: Update to 2.0. 
* gnu/packages/bioinformatics.scm (mash): Update to 2.0.
 2018-03-30 12:18:35 +10:00
Ben Woodcroft c7a8aa131d
gnu: mafft: Update to 7.394. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
 2018-03-30 12:18:35 +10:00
Ben Woodcroft 9a40b8d9b2
gnu: diamond: Update to 0.9.19. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
 2018-03-30 12:18:35 +10:00
Ricardo Wurmus 315ed91efb
gnu: pybitmessage: Update to 0.6.3.2 [security fixes]. 
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2.
[source]: Fetch from git.
 2018-03-29 22:43:37 +02:00
Ricardo Wurmus 80808d678a
gnu: hydrogen: Update to 1.0.0-beta1. 
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1.
[source]: Fetch from git.
[arguments]: Add phase to fix installation directory for pixmaps.
[inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
 2018-03-29 22:40:30 +02:00
Ricardo Wurmus 9f1ac4fa49
gnu: mod-host: Update to 0.10.6-3.1726ad06b. 
* gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
 2018-03-29 22:26:59 +02:00
Ricardo Wurmus 9602ac76b4
gnu: drumkv1: Update to 0.9.0. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 2a5d08daf4
gnu: samplv1: Update to 0.9.0. 
* gnu/packages/music.scm (samplv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 4503b18701
gnu: padthv1: Update to 0.9.0. 
* gnu/packages/music.scm (padthv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 7c60a23cb1
gnu: synthv1: Update to 0.9.0. 
* gnu/packages/music.scm (synthv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 15c5541bc8
gnu: qtractor: Update to 0.9.0. 
* gnu/packages/music.scm (qtractor): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Marius Bakke cee6d90f73
gnu: awesome: Remove obsolete snippet. 
* gnu/packages/wm.scm (awesome)[source](snippet): Remove.
 2018-03-29 21:30:15 +02:00
Marius Bakke 40fb6b84f9
gnu: xcb-util-xrm: Update to 1.3. 
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
 2018-03-29 21:30:15 +02:00
Marius Bakke d2fd5c6532
gnu: mbedtls-apache: Update to 2.7.2. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2.
[source](snippet): Remove.
 2018-03-29 21:30:15 +02:00
Leo Famulari b6beda1d6b
gnu: Add botan. 
* gnu/packages/crypto.scm (botan): New variable.
 2018-03-29 14:40:34 -04:00
Tonton d4e0ebd016
gnu: Add fpm2. 
* gnu/packages/password-utils.scm (fpm2): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-29 18:43:09 +02:00
Tonton af1e3dfe27
gnu: Add screen-message. 
* gnu/packages/xdisorg.scm (screen-message): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-29 18:35:46 +02:00
Tobias Geerinckx-Rice 95fb6b0413
gnu: r-lme4: Update to 1.1-16. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
 2018-03-29 17:45:45 +02:00
Tobias Geerinckx-Rice dc8450c178
gnu: r-curl: Update to 3.2. 
* gnu/packages/web.scm (r-curl): Update to 3.2.
 2018-03-29 17:36:57 +02:00
Tobias Geerinckx-Rice f36685b058
gnu: bspwm: Update to 0.9.4. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
 2018-03-29 17:36:50 +02:00
Tobias Geerinckx-Rice 4bb5bdd963
gnu: rss-bridge: Update to 2018-03-11. 
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
 2018-03-29 17:36:39 +02:00
Roel Janssen e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
 2018-03-29 15:50:44 +02:00
Roel Janssen 53e42694e5
gnu: kaiju: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
 2018-03-29 15:40:52 +02:00
Vasile Dumitrascu d232e02ecf
gnu: Add duperemove. 
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-29 15:17:35 +02:00
Ludovic Courtès 9c3f2c2e83
gnu: Add python-debug. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
 2018-03-29 15:17:35 +02:00
Efraim Flashner 594e5d7368
gnu: nano: Update to 2.9.5. 
* gnu/packages/nano.scm (nano): Update to 2.9.5.
 2018-03-29 16:08:06 +03:00
Roel Janssen c974008d91
gnu: Add r-idr. 
* gnu/packages/cran.scm (r-idr): New variable.
 2018-03-29 14:26:44 +02:00
Roel Janssen 996bed0608
gnu: Add r-amap. 
* gnu/packages/cran.scm (r-amap): New variable.
 2018-03-29 14:11:21 +02:00
Roel Janssen 6174db2b2c
gnu: Add r-venndiagram. 
* gnu/packages/cran.scm (r-venndiagram): New variable.
 2018-03-29 14:08:36 +02:00
Roel Janssen ddbf2a98ba
gnu: Add r-pastecs. 
* gnu/packages/cran.scm (r-pastecs): New variable.
 2018-03-29 13:54:30 +02:00
Ricardo Wurmus 017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22. 
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
 2018-03-29 12:26:38 +02:00
Ricardo Wurmus b0a4b6d957
gnu: libusb-for-axoloti: Update patch. 
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
 2018-03-29 12:26:38 +02:00
Chris Marusich 7874e9e047
gnu: Refactor boot-service-type and activation-service-type. 
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
 2018-03-29 08:38:49 +02:00
Jelle Licht ce353a548f
gnu: node: Update to 9.10.0. 
* gnu/packages/node.scm (node): Update to 9.10.0.
 2018-03-28 23:33:53 +02:00
Jelle Licht b63af9b7c7
gnu: http-parser: Update to 2.8.0. 
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
 2018-03-28 23:33:43 +02:00
Marius Bakke 0a8985f395
gnu: xf86-video-ati: Update to 18.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
 2018-03-28 21:23:21 +02:00
Marius Bakke 4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
 2018-03-28 21:23:21 +02:00
Leo Famulari 935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes]. 
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
 2018-03-28 14:59:47 -04:00
Leo Famulari 590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
 2018-03-28 14:07:45 -04:00
Konrad Hinsen 1cde746700
gnu: Add r-parsedate. 
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:18:20 +02:00
Maxim Cournoyer 3481c714c6
gnu: mu: Fix tests failures triggered by DST. 
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:14:40 +02:00
Nadya Voronova 910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Arun Isaac 733d66a532
gnu: culmus: Rename to font-culmus. 
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
 2018-03-28 14:58:34 +05:30
Arun Isaac 0328c514ed
gnu: culmus: Switch to font-build-system. 
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 15795e0723
gnu: font-linuxlibertine: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 803b9e8bf4
gnu: font-lato: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
 2018-03-28 14:58:33 +05:30
Mark H Weaver 6ef66d3f12
gnu: icecat: Add fix for CVE-2018-5148. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148
from the upstream mozilla-esr52 repository.
 2018-03-27 21:08:15 -04:00
Leo Famulari 4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}. 
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2018-03-27 19:00:03 -04:00
Nicolas Goaziou 5bd43f7fd1
gnu: emacs-org, emacs-org-contrib: Update to 9.1.9. 
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180327, a.k.a. release 9.1.9.
 2018-03-27 23:29:52 +02:00
ng0 78ba71b0b4
gnu: alpine: Update to 2.21.999. 
* gnu/packages/mail.scm (alpine): Update to 2.21.999.
[source]: Change to new upstream location.
[home-page]: Use new location.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-27 23:26:15 +02:00
Ludovic Courtès f7a5cf7a2d
nss: Remove '%compat' from the defaults. 
* gnu/system/nss.scm (%compat): Add comment.
(<name-service-switch>)[group, password, shadow]: Remove %COMPAT from
the default value.
 2018-03-27 23:26:15 +02:00
Tobias Geerinckx-Rice 75176f1b94
gnu: zstd: Update to 1.3.4. 
* gnu/packages/compression.scm (zstd): Update to 1.3.4.
 2018-03-27 22:08:57 +02:00
Tobias Geerinckx-Rice 15ff38f1b4
gnu: dovecot: Update to 2.3.1. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.1.
[arguments]: Rename ‘patch-other-shebangs’ phase to the more accurate
‘patch-other-file-names’... then patch more file names.
 2018-03-27 22:02:01 +02:00
Tobias Geerinckx-Rice 8960b2e64d
gnu: lyx: Use HTTPS home page. 
* gnu/packages/tex.scm (lyx)[home-page]: Use HTTPS.
 2018-03-27 22:00:14 +02:00
Leo Famulari 0fc3af7d88
gnu: openssl@1.1.0: Update to 1.1.0h [security fixes]. 
Fixes CVE-2017-3738 and CVE-2018-{0733,0739}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0h.
 2018-03-27 15:45:41 -04:00
Ludovic Courtès de0021322d
gnu: Remove unnecessary import. 
* gnu/packages/guile.scm: Remove unnecessary import.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès 82b71ac366
activation: Pass '-d HOME' to 'usermod'. 
Fixes a bug whereby changes to user home directories in the OS config
would never be effective.

Reported by Pierre Neidhardt <ambrevar@gmail.com>.

* gnu/build/activation.scm (modify-user): Pass '-d HOME'.
 2018-03-27 14:51:44 +02:00