76513c949b
gnu: debian-archive-keyring: Update to 2019.01.
...
* gnu/packages/debian (debian-archive-keyring): Update to 2019.01.
2019-06-01 17:38:48 -07:00
fd4d3939c4
gnu: giac: Update to 1.5.0-57.
...
* gnu/packages/algebra.scm (giac): Update to 1.5.0-57.
2019-06-02 02:21:15 +02:00
1a2fa342f0
gnu: musescore: Update to 3.1.
...
* gnu/packages/music.scm (musescore): Update to 3.1.
2019-06-02 02:02:41 +02:00
bb64b2e7c0
herd: Use the Guile 2.2 'setvbuf' API.
...
* gnu/services/herd.scm (open-connection): Use 'block for 'setvbuf'.
2019-06-02 01:38:36 +02:00
08be02bea1
gnu: Add terminator.
...
* gnu/packages/gnome.scm (terminator): Add at 1.91
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-02 01:38:36 +02:00
3eb261e2e5
gnu: ghc-happy: Skip memory-hungry tests.
...
Tests fail reliably for me on a system with 2GB of available RAM, in
`issue93.a.hs` and `issue93.n.hs`.
* gnu/packages/haskell.scm (ghc-happy): Skip test "issue93".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-02 01:38:36 +02:00
8b3560501f
gnu: keepassxc: Update to 2.4.2.
...
* gnu/packages/password-utils.scm (keepassxc): Update to 2.4.2.
2019-06-02 01:31:52 +02:00
36f5e67ab4
gnu: grammalecte: Update to 1.1.1.
...
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.1.1.
2019-06-02 01:23:40 +02:00
7d6efd2b6c
gnu: r-openssl: Update to 1.4.
...
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.
2019-06-01 23:04:26 +02:00
f53b4a6b77
gnu: r-biocviews: Update to 1.52.2.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.2.
[propagated-inputs]: Add r-biocmanager.
2019-06-01 23:04:26 +02:00
2ccc9d692a
gnu: Add gash.
...
* gnu/packages/shells.scm (gash): New variable.
2019-06-01 14:47:56 -04:00
a0c3a2e3a1
gnu: Add txr.
...
* gnu/packages/lisp.scm (txr): New variable.
* gnu/packages/patches/txr-shell.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-06-01 15:26:30 +02:00
b6cf7e54ea
gnu: linux-libre: Update to 5.1.6.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.6.
(%linux-libre-hash): Update hash.
2019-06-01 01:43:11 -04:00
bc5d9ae7c9
gnu: linux-libre@4.19: Update to 4.19.47.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.47.
(%linux-libre-4.19-hash): Update hash.
2019-06-01 01:40:52 -04:00
83c0672877
gnu: linux-libre@4.14: Update to 4.14.123.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.123.
(%linux-libre-4.14-hash): Update hash.
2019-06-01 01:39:06 -04:00
9d96994c62
gnu: linux-libre@4.9: Update to 4.9.180.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.180.
2019-06-01 01:37:28 -04:00
86d73d59c9
gnu: gnucash-docs: Update to 3.5.
...
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.5.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-05-31 23:06:10 -04:00
d4cb92e707
gnu: gnucash: Update to 3.5.
...
* gnu/packages/gnucash.scm (gnucash): Update to 3.5.
[source]: Remove unneeded patch.
* gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-05-31 23:06:10 -04:00
4d44bcad56
gnu: dealii-openmpi: Add hdf5-parallel-openmpi input.
...
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
2019-05-31 19:41:41 -05:00
a13e0f3db4
gnu: slepc: Update to 3.11.1.
...
* gnu/packages/maths.scm (slepc): Update to 3.11.1.
[native-inputs]: Add petsc:examples.
[arguments]: Add PETSCCONFIGDIR to #:make-flags.
2019-05-31 19:41:41 -05:00
4f7a4a06c2
gnu: petsc: Update to 3.11.2.
...
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
2019-05-31 19:41:41 -05:00
e586c6faf3
gnu: petsc-complex-mpi: Setup MPI for tests.
...
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup
phase.
2019-05-31 19:41:41 -05:00
5c48519204
gnu: Add mousepad.
...
* gnu/packages/xfce.scm (mousepad): New variable.
2019-05-31 18:54:20 -04:00
7293e3dba1
gnu: Add zbar.
...
* gnu/packages/aidc.scm (zbar): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 23:21:02 +02:00
2177d9222f
services: Add patchwork.
...
* gnu/service/web.scm (<patchwork-database-configuration>
<patchwork-settings-module>, <patchwork-configuration>): New record types.
(patchwork-virtualhost): New procedure.
(patchwork-service-type): New variable.
* gnu/tests/web.scm (%test-patchwork): New variable.
* doc/guix.text (Web Services): Document it.
2019-05-31 20:22:23 +01:00
4764c6cc46
gnu: Add patchwork.
...
* gnu/packages/patchutils.scm (patchwork): New variable.
2019-05-31 20:22:23 +01:00
f6b0e1f8ff
services: Add getmail.
...
Getmail is a mail retriever written in Python, this commit adds a service-type
to run getmail. I'm looking at this, as it's a convinient way of getting
mailing list messages in to Patchwork.
I initially tried putting this in the (gnu services mail) module, but due to
also trying to use the define-configuration pattern, it conflicted with the
dovecot service.
* gnu/services/getmail.scm: New file.
* gnu/local.mk: Add it.
* gnu/tests/mail.scm (%getmail-os, %test-getmail): New variables.
(run-getmail-test): New procedure.
2019-05-31 20:22:20 +01:00
9bc1de3134
gnu: Go 1.4: Fix typo.
...
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
2019-05-31 10:30:21 -04:00
db6dd04c3d
gnu: gtksourceview-2: Fix finding default data.
...
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
2019-05-31 14:41:38 +02:00
27489e7f73
gnu: php: Update to 7.3.6.
...
* gnu/packages/php.scm (php): Update to 7.3.6.
2019-05-31 14:41:32 +02:00
1a24f855c8
gnu: Add r-birta.
...
* gnu/packages/bioconductor.scm (r-birta): New variable.
2019-05-31 14:40:29 +02:00
81e3de01ae
gnu: Add r-birewire.
...
* gnu/packages/bioconductor.scm (r-birewire): New variable.
2019-05-31 14:40:20 +02:00
95bf71c307
gnu: r-seriation: Update to 1.2-5.
...
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
2019-05-31 14:29:32 +02:00
2e62ba46e2
gnu: emacs-diff-hl: Update to 1.8.6.
...
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6.
[source]: Fetch from git.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:21:06 +02:00
66712cc0ed
gnu: emacs-helm: Update to 3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:20:20 +02:00
f42399b5e5
gnu: emacs-counsel-tramp: Update to 0.6.3.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:19:53 +02:00
ea82e3b266
gnu: emacs-editorconfig: Update to 0.8.0.
...
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:19:18 +02:00
265ee14650
gnu: emacs-exec-path-from-shell: Update to 1.12.
...
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12.
[source]: Use git-fetch.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:18:29 +02:00
8ae48674ce
gnu: Add emacs-reformatter.
...
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:15:52 +02:00
b0eaead510
gnu: Add emacs-ivy-pass.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 09:56:17 +02:00
e637744547
gnu: kitty: Update to 0.14.1.
...
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
2019-05-31 08:33:19 +02:00
ff793da669
gnu: diffoscope: Update to version 115-1.7f3416f.
...
* gnu/packages/package-management (diffoscope):
[package] Update to version 115-1.7f3416f.
[source] Switch to using git-fetch.
[inputs] Move python-pytest and python-chardet ...
[native-inputs] ... to here.
[arguments] Move comment to fit line length.
2019-05-30 16:04:30 -07:00
add5ecfd68
gnu: r-biocviews: Update to 1.52.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
2019-05-30 13:41:10 +02:00
782a7f4655
gnu: r-tibble: Update to 2.1.2.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
2019-05-30 13:41:04 +02:00
d1ee1540d4
gnu: r-dose: Update to 3.10.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30 13:40:48 +02:00
169d63f533
gnu: Add gthumb.
...
* gnu/packages/gnome.scm (gthumb): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-30 11:50:05 +02:00
dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm.
...
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29 23:16:49 +02:00
4c8603e808
gnu: r-statmod: Update to 1.4.32.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29 22:38:05 +02:00
765d327c85
gnu: r-fields: Update to 9.8-3.
...
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29 22:38:05 +02:00
a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29 22:38:05 +02:00
a15cee50ce
gnu: Use make-linux-libre-headers.
...
* gnu/packages/linux.scm (make-linux-libre-headers): New variable.
(linux-libre): Rename to...
(linux-libre-5.1): ...this.
(linux-libre-headers): Rename to...
(linux-libre-headers-4.14.67): ...this.
(linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers.
(linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19,
%linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15,
linux-libre-headers-4.15, linux-libre-headers-4.14): New variables.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 18:19:16 +02:00
2ea77d48a7
gnu: cross-base: Allow non-default linux-headers.
...
* gnu/packages/cross-base.scm (cross-kernel-headers): Add
LINUX-HEADERS optional argument.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:44:54 +02:00
7180dd6716
gnu: Add basic support for riscv64-linux-gnu targets.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"riscv64-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "riscv"
prefix.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:40:31 +02:00
4f963be052
gnu: Add childsplay.
...
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29 13:09:53 +02:00
694cb8dc62
installer: Fix wifi menu crash with hidden SSIDs.
...
This fixes https://issues.guix.gnu.org/issue/35622 .
* gnu/installer/connman.scm (<service>): Mention that name may be false.
* gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services
without name.
Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
2019-05-29 11:44:49 +02:00
4b92dac20f
gnu: awscli: Add missing input.
...
Fixes <https://bugs.gnu.org/35980 >.
* gnu/packages/python-web.scm (awscli)[arguments]: Add build phase
"fix-reference-to-groff".
[inputs]: Add groff.
2019-05-29 10:56:28 +02:00
d37ba98409
gnu: r-scran: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29 00:02:42 +02:00
55cd48508e
gnu: r-scater: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29 00:02:37 +02:00
102cf9a1ca
gnu: r-sva: Update to 3.32.1.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29 00:02:31 +02:00
24f46e6e9e
gnu: r-genomicfeatures: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29 00:02:25 +02:00
4eea449aaa
gnu: r-edger: Update to 3.26.4.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29 00:02:17 +02:00
4929a30f69
gnu: r-variantannotation: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-29 00:02:10 +02:00
e4519ee73d
gnu: r-atacseqqc: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28 23:56:36 +02:00
13b49976b7
gnu: r-icobra: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28 23:56:31 +02:00
85d0bd5340
gnu: r-chippeakanno: Update to 3.18.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28 23:56:27 +02:00
f43ec9e96a
gnu: r-geosphere: Update to 1.5-10.
...
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28 23:56:15 +02:00
0fe52daa59
gnu: r-ggfortify: Update to 0.4.7.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28 23:56:08 +02:00
7a8577717f
gnu: r-wgcna: Update to 1.68.
...
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28 23:56:04 +02:00
650e8defa0
gnu: r-bookdown: Update to 0.11.
...
* gnu/packages/cran.scm (r-bookdown): Update to 0.11.
[propagated-inputs]: Add ghc-pandoc; remove r-yaml.
2019-05-28 23:55:44 +02:00
20656a0202
gnu: r-upsetr: Update to 1.4.0.
...
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
2019-05-28 23:55:38 +02:00
41059f63df
gnu: r-epi: Update to 2.37.
...
* gnu/packages/cran.scm (r-epi): Update to 2.37.
2019-05-28 23:55:33 +02:00
9a749cad19
gnu: r-etm: Update to 1.0.5.
...
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
2019-05-28 23:55:27 +02:00
10dbc3fc54
gnu: r-cmprsk: Update to 2.2-8.
...
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
2019-05-28 23:55:21 +02:00
fa10f0d330
gnu: r-ks: Update to 1.11.5.
...
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
2019-05-28 23:55:14 +02:00
1d7bde781f
gnu: r-bayesplot: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0.
[propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
2019-05-28 23:54:53 +02:00
27abdb11ae
gnu: r-refgenome: Update to 1.7.7.
...
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
2019-05-28 23:54:46 +02:00
794c9e7d96
gnu: r-snakecase: Update to 0.11.0.
...
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
2019-05-28 23:54:40 +02:00
9dd351233b
gnu: r-openxlsx: Update to 4.1.0.1.
...
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
2019-05-28 23:54:36 +02:00
d328379d62
gnu: r-pillar: Update to 1.4.1.
...
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
2019-05-28 23:54:32 +02:00
130314d8fa
gnu: r-tsp: Update to 1.1-7.
...
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
2019-05-28 23:54:26 +02:00
6d3cfb88ea
gnu: r-jomo: Update to 2.6-8.
...
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
2019-05-28 23:54:18 +02:00
beb82eb9d0
gnu: r-ksamples: Update to 1.2-9.
...
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
2019-05-28 23:54:12 +02:00
6edf0fb3db
gnu: r-lpsolve: Update to 5.6.13.1.
...
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
2019-05-28 23:54:07 +02:00
14532452b8
gnu: r-car: Update to 3.0-3.
...
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
2019-05-28 23:54:00 +02:00
341643c6e1
gnu: r-fpc: Update to 2.2-1.
...
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1.
[propagated-inputs]: Remove r-trimcluster.
2019-05-28 23:53:43 +02:00
f95690ceae
gnu: r-prabclus: Update to 2.2-7.1.
...
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
2019-05-28 23:53:33 +02:00
1498b5a2a4
gnu: r-zoo: Update to 1.8-6.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
2019-05-28 23:53:28 +02:00
3fca3fa1bc
gnu: r-rmarkdown: Update to 1.13.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13.
[propagated-inputs]: Add r-xfun.
2019-05-28 23:53:15 +02:00
923c6ac139
gnu: r-evaluate: Update to 0.14.
...
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
2019-05-28 23:53:02 +02:00
67458e209d
gnu: python-attrs: Update to 19.1.0.
...
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:48:10 +02:00
205eb40e5b
gnu: python-flask: Update to 1.0.3.
...
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28 21:18:24 +02:00
458e92215f
gnu: d-feet: Fix missing input and update to 0.3.14.
...
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14.
[inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
2019-05-28 14:53:02 +02:00
e7f078c337
gnu: guix: Update to 35d1354.
...
* gnu/packages/package-management.scm (guix): Update to 35d1354
2019-05-28 09:51:12 +02:00
70fa77d881
gnu: emacs-relint: Update to 1.8.
...
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
2019-05-27 23:22:34 +02:00
d8d896c5b5
gnu: emacs-xr: Update to 1.12.
...
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
2019-05-27 23:22:19 +02:00
2e5c71b2a2
gnu: guix: Add dependency on lzlib.
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* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
2019-05-27 22:47:24 +02:00
8916034a34
gnu: r-shiny: Fix JavaScript minification.
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Fixes <https://bugs.gnu.org/35923 >.
* gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
2019-05-27 22:09:22 +02:00
ed72a133db
gnu: Add osmctools
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* gnu/packages/geo.scm (osmctools): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:32:13 -04:00
521d736ae9
gnu: go@1.4: Update to 1.4-bootstrap-20171003.
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* gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is
still supported upstream.
[version]: Update to 1.4-bootstrap-20171003.
[arguments]: Remove obsolete fix for timezone test which is now included
upstream. Don't manually disable cgo because it is disabled by default.
Manually enable test suite because future releases will disable tests by
default.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-05-27 14:26:46 -04:00
8d1647b228
gnu: python-alembic: Update to 1.0.10.
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* gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
2019-05-27 18:16:25 +02:00
Vagrant Cascadian