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Author SHA1 Message Date
Ben Woodcroft f38ac742e6
gnu: mash: Update to 2.0. 
* gnu/packages/bioinformatics.scm (mash): Update to 2.0.
 2018-03-30 12:18:35 +10:00
Ben Woodcroft c7a8aa131d
gnu: mafft: Update to 7.394. 
* gnu/packages/bioinformatics.scm (mafft): Update to 7.394.
 2018-03-30 12:18:35 +10:00
Ben Woodcroft 9a40b8d9b2
gnu: diamond: Update to 0.9.19. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.19.
 2018-03-30 12:18:35 +10:00
Ricardo Wurmus 315ed91efb
gnu: pybitmessage: Update to 0.6.3.2 [security fixes]. 
* gnu/packages/messaging.scm (pybitmessage): Update to 0.6.3.2.
[source]: Fetch from git.
 2018-03-29 22:43:37 +02:00
Ricardo Wurmus 80808d678a
gnu: hydrogen: Update to 1.0.0-beta1. 
* gnu/packages/music.scm (hydrogen): Update to 1.0.0-beta1.
[source]: Fetch from git.
[arguments]: Add phase to fix installation directory for pixmaps.
[inputs]: Remove qt-4; add qtbase and qtxmlpatterns.
 2018-03-29 22:40:30 +02:00
Ricardo Wurmus 9f1ac4fa49
gnu: mod-host: Update to 0.10.6-3.1726ad06b. 
* gnu/packages/music.scm (mod-host): Update to 0.10.6-3.1726ad06b.
 2018-03-29 22:26:59 +02:00
Ricardo Wurmus 9602ac76b4
gnu: drumkv1: Update to 0.9.0. 
* gnu/packages/music.scm (drumkv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 2a5d08daf4
gnu: samplv1: Update to 0.9.0. 
* gnu/packages/music.scm (samplv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 4503b18701
gnu: padthv1: Update to 0.9.0. 
* gnu/packages/music.scm (padthv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 7c60a23cb1
gnu: synthv1: Update to 0.9.0. 
* gnu/packages/music.scm (synthv1): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Ricardo Wurmus 15c5541bc8
gnu: qtractor: Update to 0.9.0. 
* gnu/packages/music.scm (qtractor): Update to 0.9.0.
 2018-03-29 22:22:50 +02:00
Marius Bakke cee6d90f73
gnu: awesome: Remove obsolete snippet. 
* gnu/packages/wm.scm (awesome)[source](snippet): Remove.
 2018-03-29 21:30:15 +02:00
Marius Bakke 40fb6b84f9
gnu: xcb-util-xrm: Update to 1.3. 
* gnu/packages/xdisorg.scm (xcb-util-xrm): Update to 1.3.
 2018-03-29 21:30:15 +02:00
Marius Bakke d2fd5c6532
gnu: mbedtls-apache: Update to 2.7.2. 
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.7.2.
[source](snippet): Remove.
 2018-03-29 21:30:15 +02:00
Leo Famulari b6beda1d6b
gnu: Add botan. 
* gnu/packages/crypto.scm (botan): New variable.
 2018-03-29 14:40:34 -04:00
Tonton d4e0ebd016
gnu: Add fpm2. 
* gnu/packages/password-utils.scm (fpm2): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-29 18:43:09 +02:00
Tonton af1e3dfe27
gnu: Add screen-message. 
* gnu/packages/xdisorg.scm (screen-message): New variable.

Signed-off-by: Tonton <tonton@riseup.net>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-29 18:35:46 +02:00
Tobias Geerinckx-Rice 95fb6b0413
gnu: r-lme4: Update to 1.1-16. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-16.
 2018-03-29 17:45:45 +02:00
Tobias Geerinckx-Rice dc8450c178
gnu: r-curl: Update to 3.2. 
* gnu/packages/web.scm (r-curl): Update to 3.2.
 2018-03-29 17:36:57 +02:00
Tobias Geerinckx-Rice f36685b058
gnu: bspwm: Update to 0.9.4. 
* gnu/packages/wm.scm (bspwm): Update to 0.9.4.
 2018-03-29 17:36:50 +02:00
Tobias Geerinckx-Rice 4bb5bdd963
gnu: rss-bridge: Update to 2018-03-11. 
* gnu/packages/web.scm (rss-bridge): Update to 2018-03-11.
 2018-03-29 17:36:39 +02:00
Roel Janssen e086d2f68b
gnu: r-mutationalpatterns: Update to 1.4.3. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3;
  [propagated-inputs]: Remove r-gridextra.
 2018-03-29 15:50:44 +02:00
Roel Janssen 53e42694e5
gnu: kaiju: Update to 1.6.2. 
* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2;
  [inputs]: Add zlib.
 2018-03-29 15:40:52 +02:00
Vasile Dumitrascu d232e02ecf
gnu: Add duperemove. 
* gnu/packages/disk.scm (duperemove): New variable.

Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-29 15:17:35 +02:00
Ludovic Courtès 9c3f2c2e83
gnu: Add python-debug. 
Suggested by Pjotr Prins <pjotr.public12@thebird.nl>.

* gnu/packages/python.scm (python-debug): New variable.
 2018-03-29 15:17:35 +02:00
Efraim Flashner 594e5d7368
gnu: nano: Update to 2.9.5. 
* gnu/packages/nano.scm (nano): Update to 2.9.5.
 2018-03-29 16:08:06 +03:00
Roel Janssen c974008d91
gnu: Add r-idr. 
* gnu/packages/cran.scm (r-idr): New variable.
 2018-03-29 14:26:44 +02:00
Roel Janssen 996bed0608
gnu: Add r-amap. 
* gnu/packages/cran.scm (r-amap): New variable.
 2018-03-29 14:11:21 +02:00
Roel Janssen 6174db2b2c
gnu: Add r-venndiagram. 
* gnu/packages/cran.scm (r-venndiagram): New variable.
 2018-03-29 14:08:36 +02:00
Roel Janssen ddbf2a98ba
gnu: Add r-pastecs. 
* gnu/packages/cran.scm (r-pastecs): New variable.
 2018-03-29 13:54:30 +02:00
Ricardo Wurmus 017bffc1a3
gnu: libusb4java: Adjust for building with libusb 1.0.22. 
* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove
"-Werror" flag.
 2018-03-29 12:26:38 +02:00
Ricardo Wurmus b0a4b6d957
gnu: libusb-for-axoloti: Update patch. 
* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb
1.0.22.
 2018-03-29 12:26:38 +02:00
Chris Marusich 7874e9e047
gnu: Refactor boot-service-type and activation-service-type. 
* gnu/services.scm (boot-service-type) <compose>: Use the "identity"
  procedure instead of the "append" procedure because it more accurately
  reflects the intent, which is to simply return the single list of
  extensions to which fold-services applies the "compose" procedure.
  (activation-service-type) <compose>: Likewise.
 2018-03-29 08:38:49 +02:00
Jelle Licht ce353a548f
gnu: node: Update to 9.10.0. 
* gnu/packages/node.scm (node): Update to 9.10.0.
 2018-03-28 23:33:53 +02:00
Jelle Licht b63af9b7c7
gnu: http-parser: Update to 2.8.0. 
* gnu/packages/web.scm (http-parser): Update to 2.8.0.
 2018-03-28 23:33:43 +02:00
Marius Bakke 0a8985f395
gnu: xf86-video-ati: Update to 18.0.1. 
* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1.
 2018-03-28 21:23:21 +02:00
Marius Bakke 4d967992d8
gnu: xf86-input-libinput: Update to 0.27.0. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0.
 2018-03-28 21:23:21 +02:00
Leo Famulari 935806b822
gnu: ntp: Update to 4.2.8p11 [security-fixes]. 
Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}.

* gnu/packages/ntp.scm (ntp): Update to 4.2.8p11.
 2018-03-28 14:59:47 -04:00
Leo Famulari 590bdc149b
gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739]. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl-1.0.2o): New variable.
 2018-03-28 14:07:45 -04:00
Konrad Hinsen 1cde746700
gnu: Add r-parsedate. 
* gnu/packages/cran.scm (r-parsedate): New variable.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:18:20 +02:00
Maxim Cournoyer 3481c714c6
gnu: mu: Fix tests failures triggered by DST. 
* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:14:40 +02:00
Nadya Voronova 910deec66c
gnu: Add tcalc. 
* gnu/packages/maths.scm (tcalc): New variables.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-28 17:13:00 +02:00
Arun Isaac 733d66a532
gnu: culmus: Rename to font-culmus. 
* gnu/packages/fonts.scm (culmus): Rename to...
(font-culmus): ...this. Re-indent.
 2018-03-28 14:58:34 +05:30
Arun Isaac 0328c514ed
gnu: culmus: Switch to font-build-system. 
* gnu/packages/fonts.scm (culmus): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 15795e0723
gnu: font-linuxlibertine: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system.
[arguments]: Replace system* with invoke.
 2018-03-28 14:58:34 +05:30
Arun Isaac 803b9e8bf4
gnu: font-lato: Switch to font-build-system. 
* gnu/packages/fonts.scm (font-lato): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
 2018-03-28 14:58:33 +05:30
Mark H Weaver 6ef66d3f12
gnu: icecat: Add fix for CVE-2018-5148. 
* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148
from the upstream mozilla-esr52 repository.
 2018-03-27 21:08:15 -04:00
Leo Famulari 4d99a3215c
gnu: mupdf: Fix CVE-2018-{6544,1000051}. 
* gnu/packages/patches/mupdf-CVE-2018-1000051.patch,
gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/pdf.scm (mupdf)[source]: Use them.
 2018-03-27 19:00:03 -04:00
Nicolas Goaziou 5bd43f7fd1
gnu: emacs-org, emacs-org-contrib: Update to 9.1.9. 
* gnu/packages/emacs.scm (emacs-org):
(emacs-org-contrib): Update to 20180327, a.k.a. release 9.1.9.
 2018-03-27 23:29:52 +02:00
ng0 78ba71b0b4
gnu: alpine: Update to 2.21.999. 
* gnu/packages/mail.scm (alpine): Update to 2.21.999.
[source]: Change to new upstream location.
[home-page]: Use new location.

Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
 2018-03-27 23:26:15 +02:00
Ludovic Courtès f7a5cf7a2d
nss: Remove '%compat' from the defaults. 
* gnu/system/nss.scm (%compat): Add comment.
(<name-service-switch>)[group, password, shadow]: Remove %COMPAT from
the default value.
 2018-03-27 23:26:15 +02:00
Tobias Geerinckx-Rice 75176f1b94
gnu: zstd: Update to 1.3.4. 
* gnu/packages/compression.scm (zstd): Update to 1.3.4.
 2018-03-27 22:08:57 +02:00
Tobias Geerinckx-Rice 15ff38f1b4
gnu: dovecot: Update to 2.3.1. 
* gnu/packages/mail.scm (dovecot): Update to 2.3.1.
[arguments]: Rename ‘patch-other-shebangs’ phase to the more accurate
‘patch-other-file-names’... then patch more file names.
 2018-03-27 22:02:01 +02:00
Tobias Geerinckx-Rice 8960b2e64d
gnu: lyx: Use HTTPS home page. 
* gnu/packages/tex.scm (lyx)[home-page]: Use HTTPS.
 2018-03-27 22:00:14 +02:00
Leo Famulari 0fc3af7d88
gnu: openssl@1.1.0: Update to 1.1.0h [security fixes]. 
Fixes CVE-2017-3738 and CVE-2018-{0733,0739}.

* gnu/packages/tls.scm (openssl-next): Update to 1.1.0h.
 2018-03-27 15:45:41 -04:00
Ludovic Courtès de0021322d
gnu: Remove unnecessary import. 
* gnu/packages/guile.scm: Remove unnecessary import.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès 82b71ac366
activation: Pass '-d HOME' to 'usermod'. 
Fixes a bug whereby changes to user home directories in the OS config
would never be effective.

Reported by Pierre Neidhardt <ambrevar@gmail.com>.

* gnu/build/activation.scm (modify-user): Pass '-d HOME'.
 2018-03-27 14:51:44 +02:00
Ludovic Courtès 7ddd418a1d
gnu: bootstrap: Remove unneeded import. 
* gnu/packages/bootstrap.scm: Remove unneeded (guix build utils) import.
 2018-03-27 14:51:44 +02:00
Timothy Sample 473cd27781
gnu: Remove Haskell packages provided by GHC. 
* gnu/packages/haskell.scm (ghc-array, ghc-binary, ghc-bytestring,
ghc-directory, ghc-haskeline, ghc-process, ghc-transformers,
ghc-transformers-0.4.2.0): Remove.
(ghc-tar)[inputs]: Remove ghc-array.
(ghc-hslogger)[inputs]: Remove ghc-directory.
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-array,
ghc-binary, and ghc-haskeline.
* gnu/packages/wm.scm (xmonad)[inputs]: Remove ghc-directory.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-03-27 11:24:20 +02:00
Tobias Geerinckx-Rice 75657922a5
gnu: supercollider: Update to 3.9.2. 
* gnu/packages/audio.scm (supercollider): Update to 3.9.2.
 2018-03-27 04:38:16 +02:00
Tobias Geerinckx-Rice f649443b7b
gnu: gzdoom: Update to 3.3.0. 
* gnu/packages/games.scm (gzdoom): Update to 3.3.0.
 2018-03-27 03:26:48 +02:00
Tobias Geerinckx-Rice 8a70a23ea6
gnu: ccache: Update to 3.4.2. 
* gnu/packages/ccache.scm (ccache): Update to 3.4.2.
 2018-03-27 03:26:47 +02:00
Tobias Geerinckx-Rice 835cf37ceb
gnu: jetring: Update to 0.27. 
* gnu/packages/gnupg.scm (jetring): Update to 0.27.
 2018-03-27 03:26:47 +02:00
Tobias Geerinckx-Rice 814612c0cc
gnu: libkomparediff2: Update to 17.12.3. 
* gnu/packages/kde.scm (libkomparediff2): Update to 17.12.3.
 2018-03-27 03:26:47 +02:00
Tobias Geerinckx-Rice 36f3e1df5f
gnu: radeontop: Update to 1.1. 
* gnu/packages/linux.scm (radeontop): Update to 1.1.
 2018-03-27 03:26:47 +02:00
Tobias Geerinckx-Rice d6fb32b8a0
gnu: ruby-rake: Update to 12.3.1. 
* gnu/packages/ruby.scm (ruby-rake): Update to 12.3.1.
 2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice 81a2217120
gnu: ruby-asciidoctor: Update to 1.5.6.2. 
* gnu/packages/ruby.scm (ruby-asciidoctor): Update to 1.5.6.2.
 2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice ef803aa52c
gnu: python-plotly: Update to 2.4.1. 
* gnu/packages/graph.scm (python-plotly): Update to 2.4.1.
 2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice 65ff6ab92c
gnu: python-django-crispy-forms: Update to 1.7.2. 
* gnu/packages/django.scm (python-django-crispy-forms): Update to 1.7.2.
 2018-03-27 03:26:46 +02:00
Tobias Geerinckx-Rice 6e54870f60
gnu: r-randomforest: Update to 4.6-14. 
* gnu/packages/statistics.scm (r-randomforest): Update to 4.6-14.
 2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice 917378f787
gnu: r-blob: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-blob): Update to 1.1.1.
[propagated-inputs]: Add r-prettyunits.
 2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice 5000283b5d
gnu: r-servr: Update to 0.9. 
* gnu/packages/web.scm (r-servr): Update to 0.9.
[propagated-inputs]: Add r-xfun.
 2018-03-27 03:26:45 +02:00
Tobias Geerinckx-Rice dadc8610e0
gnu: vis: Update to 0.5. 
* gnu/packages/text-editors.scm (vis): Update to 0.5.
 2018-03-27 03:26:45 +02:00
Leo Famulari 86bd0f797f
gnu: libreoffice: Update to 5.4.6.2. 
* gnu/packages/libreoffice.scm (libreoffice): Update to 5.4.6.2.
 2018-03-26 19:50:46 -04:00
Vasile Dumitrascu faef71f926
gnu: hplip: Update to 3.18.3. 
* gnu/packages/cups.scm (hplip): Update to 3.18.3.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-26 19:50:43 -04:00
Arun Isaac 4769ef0074
gnu: Add font-lohit. 
* gnu/packages/fonts.scm (font-lohit): New variable.
 2018-03-27 01:35:05 +05:30
Oleg Pykhalov 196c8b3739
gnu: translate-shell: Update to 0.9.6.7. 
* gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7.
[source](patches): Add it.  [home-page]: Append slash.
 2018-03-26 22:47:16 +03:00
Oleg Pykhalov e5e5eb1fcf
gnu: Add twitchy. 
* gnu/packages/video.scm (twitchy): New public variable.
 2018-03-26 22:47:16 +03:00
Oleg Pykhalov e0de023eae
gnu: Add perl-uri-escape. 
* gnu/packages/perl-web.scm (perl-uri-escape): New public variable.
 2018-03-26 22:47:16 +03:00
Charlie Ritter 786d3de297
gnu: Add r-tidyverse. 
* gnu/packages/cran.scm (r-tidyverse): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:58 +02:00
Charlie Ritter 8a1ef6ac25
gnu: Add r-rvest. 
* gnu/packages/cran.scm (r-rvest): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:58 +02:00
Charlie Ritter 81a9d4a422
gnu: Add r-selectr. 
* gnu/packages/cran.scm (r-selectr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:58 +02:00
Charlie Ritter 948740b08a
gnu: Add r-reprex. 
* gnu/packages/cran.scm (r-reprex): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:58 +02:00
Charlie Ritter 10487c30bc
gnu: Add r-callr. 
* gnu/packages/cran.scm (r-callr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:57 +02:00
Charlie Ritter d7637e5ed8
gnu: Add r-readxl. 
* gnu/packages/cran.scm (r-readxl): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:57 +02:00
Charlie Ritter 9a91c925f2
gnu: Add r-modelr. 
* gnu/packages/cran.scm (r-modelr): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:57 +02:00
Charlie Ritter d2a507efd9
gnu: Add r-haven. 
* gnu/packages/cran.scm (r-haven): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 21:43:57 +02:00
Sandeep Subramanian 96e223621f
gnu: Add r-arules. 
* gnu/packages/cran.scm (r-arules): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2018-03-26 14:58:25 -04:00
Christopher Baines 376015c35b
gnu: emacs-robe: Include the lib directory in the output. 
This contains some Ruby code that needs to be accessible to use robe.

* gnu/packages/emacs.scm (emacs-robe)[arguments]: Include the lib directory,
in addition to the %default-includes.
 2018-03-26 19:52:06 +01:00
Christopher Baines 158943f228
gnu: emacs-minitest: Switch source to the git repository. 
The 0.8.0 release was over 3 years ago, and there have been ~50 commits since.

* gnu/packages/emacs.scm (emacs-minitest): Wrap with let, and change source to
the git repository.
 2018-03-26 19:52:06 +01:00
Ricardo Wurmus 5b5dbece6b
gnu: ghc-cryptonite: Update to 0.25. 
* gnu/packages/haskell-crypto.scm (ghc-cryptonite): Update to 0.25.
[inputs]: Add ghc-basement.
 2018-03-26 20:41:50 +02:00
Ricardo Wurmus 150e8e25f5
gnu: ghc-memory: Update to 0.14.16. 
* gnu/packages/haskell.scm (ghc-memory): Update to 0.14.16.
[inputs]: Add ghc-basement and ghc-foundation.
 2018-03-26 20:41:50 +02:00
Ricardo Wurmus 635cc8fef6
gnu: Add ghc-foundation. 
* gnu/packages/haskell.scm (ghc-foundation): New variable.
 2018-03-26 20:41:50 +02:00
Ricardo Wurmus da5fe92a0b
gnu: Add ghc-basement. 
* gnu/packages/haskell.scm (ghc-basement): New variable.
 2018-03-26 20:41:50 +02:00
Feng Shu 03a34d5412
gnu: emacs-exwm-x: Update to 1.8.1. 
* gnu/packages/emacs.scm (emacs-exwm-x): Update to 1.8.1.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 20:06:51 +02:00
Feng Shu 9f2a58a01a
gnu: emacs-exwm: Update to 0.18. 
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.18.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 20:06:46 +02:00
Feng Shu aaa31d1b00
gnu: emacs-xelb: Update to 0.14. 
* gnu/packages/emacs.scm (emacs-xelb): Update to 0.14.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 20:06:37 +02:00
Nils Gillmann 0741932bc4
gnu: libressl: Update to 2.7.1. 
* gnu/packages/tls.scm (libressl): Update to 2.7.1.

Signed-off-by: Nils Gillmann <ng0@n0.is>
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2018-03-26 19:46:07 +02:00
Ludovic Courtès 3c1ae2a637
gnu: perl-image-exiftool: Update to 10.80. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.80.
 2018-03-26 18:24:55 +02:00
Ludovic Courtès 5ccd8f4061
gnu: magit-svn: Update to 2.2.0. 
* gnu/packages/emacs.scm (magit-svn): Update to 2.2.0.
[propagated-inputs]: Add WITH-EDITOR.
[arguments]: Add WITH-EDITOR to EMACSLOADPATH.
 2018-03-26 18:24:55 +02:00
Ludovic Courtès a271096b93
gnu: evince: Update to 3.28.0. 
* gnu/packages/gnome.scm (evince): Update to 3.28.0.
 2018-03-26 18:24:55 +02:00
Ludovic Courtès 323991339e
gnu: hwloc@1: Update to 1.11.10. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
 2018-03-26 18:24:55 +02:00
Ludovic Courtès d2c036557a
gnu: hwloc@2: Update to 2.0.1. 
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-03-26 18:24:55 +02:00
Efraim Flashner bab9793f54
gnu: classpath: Add aarch64-linux support. 
* gnu/packages/java.scm (classpath-bootstrap, classpath-0.99)[source]:
Add patch.
* gnu/packages/patches/classpath-aarch64-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-03-26 12:21:33 +03:00
Mark H Weaver 5dc8f5de0c
gnu: linux-libre: Update to 4.15.13. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.13.
(%linux-libre-hash): Update hash.
 2018-03-26 05:00:38 -04:00
Mark H Weaver 27d528d81a
gnu: linux-libre@4.14: Update to 4.14.30. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.30.
(%linux-libre-4.14-hash): Update hash.
 2018-03-26 04:59:30 -04:00
Mark H Weaver af55816de5
gnu: linux-libre@4.9: Update to 4.9.90. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.90.
 2018-03-26 04:58:55 -04:00
Mark H Weaver 7ebe7d85c0
gnu: linux-libre@4.4: Update to 4.4.124. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.124.
 2018-03-26 04:58:09 -04:00
Ludovic Courtès e784e2561e
gnu: geeqie: Update to 1.4. 
* gnu/packages/image-viewers.scm (geeqie): Update to 1.4.
[arguments]: In 'autogen' phase, create ChangeLog{,.html}.
 2018-03-26 09:54:46 +02:00
Ludovic Courtès 6ae0fd212a
gnu: emacs-flycheck: Update to 31. 
* gnu/packages/emacs.scm (flycheck): Update to 31.
 2018-03-26 09:43:19 +02:00
Ludovic Courtès 66eb91be9c
gnu: pius: Update to 2.2.6. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.6.
 2018-03-26 09:42:43 +02:00
Ludovic Courtès 07a049ceb1
gnu: usbredir: Build without '-Werror'. 
Fixes build failure introduced in
58ee8a94a9, where compilation would fail
with:

  usbredirhost.c: In function ?usbredirhost_open_full?:
  usbredirhost.c:749:5: error: ?libusb_set_debug? is deprecated: Use libusb_set_option instead [-Werror=deprecated-declarations]
       libusb_set_debug(host->ctx, host->verbose);
       ^
  In file included from usbredirhost.h:24:0,
		   from usbredirhost.c:31:
  /gnu/store/j8hzc465xy33cjfcq3wv39szxia4xrzv-libusb-1.0.22/include/libusb-1.0/libusb.h:1300:18: note: declared here
   void LIBUSB_CALL libusb_set_debug(libusb_context *ctx, int level);
		    ^
  cc1: all warnings being treated as errors

* gnu/packages/spice.scm (usbredir)[arguments]: In 'autogen' phase,
remove '-Werror' from configure.ac.
 2018-03-26 09:38:29 +02:00
Ricardo Wurmus 51602aac8e
gnu: ecj-javac-wrapper: Fix reference to glibj and tools.zip. 
* gnu/packages/java.scm (ecj-javac-wrapper)[arguments]: Fix references to
glibj and tools.zip.
 2018-03-26 08:05:24 +02:00
Ricardo Wurmus 40e3a197f9
gnu: classpath-jamvm-wrappers: Run JamVM with conservative options. 
* gnu/packages/java.scm (classpath-jamvm-wrappers)[arguments]: Pass extra
options to JamVM.
 2018-03-26 08:05:24 +02:00
Ludovic Courtès ce5964074a
gnu: hwloc@1: Update to 1.11.9. 
* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
 2018-03-26 00:15:52 +02:00
Ricardo Wurmus ae0a5a7edc
gnu: ecj-javac-wrapper: Run JamVM with conservative options. 
* gnu/packages/java.scm (ecj-javac-wrapper)[arguments]: Add options to jamvm
invocation.
 2018-03-26 00:14:44 +02:00
Ricardo Wurmus d4fd4c3a7b
gnu: ant-bootstrap: Make build more reliable. 
* gnu/packages/java.scm (ant-bootstrap)[arguments]: Remove bootstrap phase;
create HOME/.ant.properties; pass options to JamVM.
 2018-03-26 00:04:53 +02:00
Marius Bakke 7240b4a989
gnu: newsboat: Update to 2.11. 
* gnu/packages/syndication.scm (newsboat): Update to 2.11.
[inputs]: Change from JSON-C-0.12 to JSON-C.
[native-search-paths]: New field.
 2018-03-25 22:57:19 +02:00
Marius Bakke 171e84d63d
gnu: httpd: Update to 2.4.33 [security fixes]. 
This fixes CVE-2017-15710, CVE-2017-15715, CVE-2018-1283, CVE-2018-1301,
CVE-2018-1302, CVE-2018-1303, and CVE-2018-1312.

* gnu/packages/web.scm (httpd): Update to 2.4.33.
 2018-03-25 22:43:39 +02:00
Ricardo Wurmus 269fb7d310
gnu: Remove sablevm and sablevm-classpath, update comments. 
* gnu/packages/java.scm (sablevm, sablevm-classpath): Remove variables.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus b5a0d42708
gnu: Remove ecj-javac-on-jamvm-wrapper. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): Remove variable.
(classpath-devel)[native-inputs]: Use ecj-javac-wrapper instead.
(jamvm)[inputs]: Use ecj-javac-wrapper instead.
(ecj-javac-on-jamvm-wrapper-final): Rename...
(ecj-javac-wrapper-final): ...to this.
(icedtea-6)[native-inputs]: Use "ecj-javac-wrapper-final" instead of
'ecj-javac-on-jamvm-wrapper-final".
[arguments]: Use jamvm's rt.jar.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus c98d7a66cc
gnu: classpath-jamvm-wrappers: Use classpath-0.99. 
* gnu/packages/java.scm (classpath-jamvm-wrappers): Inherit from
classpath-0.99.
[native-inputs]: Replace "jamvm-bootstrap" with "jamvm-1-bootstrap"; replace
"classpath-on-sablevm" with "classpath-0.99".
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus 58d2b13544
gnu: Remove jamvm-bootstrap. 
* gnu/packages/java.scm (jamvm-bootstrap): Remove variable.
(classpath-devel)[native-inputs]: Use "jamvm-1-bootstrap" instead of
"jamvm-bootstrap".
(jamvm): Inherit from jamvm-1-bootstrap.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus 8778da03c8
gnu: Replace classpath-on-sablevm with classpath-0.99. 
* gnu/packages/java.scm (classpath-on-sablevm): Replace with...
(classpath-0.99): ...this new variable.
(classpath-devel): Inherit from classpath-0.99.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus c4f06c1164
gnu: ecj-javac-wrapper: Do not use sablevm. 
* gnu/packages/java.scm (ecj-javac-wrapper)[native-inputs]: Remove sablevm and
sablevm-classpath; add jamvm-1-bootstrap and classpath-bootstrap.
[arguments]: Simplify builder now that only jamvm is used.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus 6c775dc644
gnu: ecj-bootstrap: Build with JamVM 1.5.1 and jikes. 
* gnu/packages/java.scm (ecj-bootstrap)[native-inputs]: Replace "sablevm" with
"jikes" and "jamvm-1-bootstrap".
[arguments]: Adjust accordingly.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus ff4d9fdf8c
gnu: ant-bootstrap: Update to 1.8.4. 
* gnu/packages/java.scm (ant-bootstrap): Update to 1.8.4.
 2018-03-25 21:41:27 +02:00
Ricardo Wurmus aa432388da
gnu: ant-bootstrap: Build with JamVM 1.5.1. 
* gnu/packages/java.scm (ant-bootstrap)[native-inputs]: Replace sablevm with
jamvm-1-bootstrap.
[arguments]: Adjust accordingly.
 2018-03-25 21:41:26 +02:00
Ricardo Wurmus 063629aa3e
gnu: Add jamvm-1-bootstrap. 
* gnu/packages/java.scm (jamvm-1-bootstrap): New variable.
 2018-03-25 21:41:26 +02:00
Ricardo Wurmus 45f762ee96
gnu: Add classpath-bootstrap. 
* gnu/packages/java.scm (classpath-bootstrap): New variable.
 2018-03-25 21:41:26 +02:00
Tobias Geerinckx-Rice a667d20e9a
gnu: libmtp: Update to 1.1.15. 
* gnu/packages/libusb.scm (libmtp): Update to 1.1.15.
 2018-03-25 20:01:14 +02:00
Tobias Geerinckx-Rice 58ee8a94a9
gnu: libusb: Update to 1.0.22. 
* gnu/packages/libusb.scm (libusb): Update to 1.0.22.
 2018-03-25 20:01:14 +02:00
Tobias Geerinckx-Rice 1dc3109707
gnu: scotch: Use predictable source URI. 
* gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
 2018-03-25 20:01:02 +02:00
Tobias Geerinckx-Rice bbc55a7dfa
gnu: mate-themes: Update to 3.22.15. 
* gnu/packages/mate.scm (mate-themes): Update to 3.22.15.
 2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice 5a5b866324
gnu: filezilla: Update to 3.31.0. 
* gnu/packages/ftp.scm (filezilla): Update to 3.31.0.
 2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice 5b367a1ade
gnu: hlint: Update to 2.1.1. 
* gnu/packages/haskell.scm (hlint): Update to 2.1.1.
 2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice 326654e42b
gnu: flashrom: Support libusb versions >1.0.21. 
* gnu/packages/flashing-tools.scm (flashrom)[arguments]: Override CFLAGS
in #:make-flags.
 2018-03-25 20:01:01 +02:00
Tobias Geerinckx-Rice 883fa31088
gnu: python-pyld: Update to 1.0.3. 
* gnu/packages/python.scm (python-pyld): Update to 1.0.3.
[arguments]: Run the new test suite.
 2018-03-25 20:01:00 +02:00
Tobias Geerinckx-Rice 7112b2f148
gnu: openlibm: Update to 0.5.5. 
* gnu/packages/maths.scm (openlibm): Update to 0.5.5.
 2018-03-25 20:01:00 +02:00
Danny Milosavljevic 9b36e3bf25
gnu: Add python-parted. 
* gnu/packages/disk.scm (python-parted, python2-parted): New variables.
 2018-03-25 19:26:27 +02:00
Danny Milosavljevic a4e7215df2
gnu: Add python2-ipy. 
* gnu/packages/networking.scm (python2-ipy): New variable.
 2018-03-25 18:51:03 +02:00
Danny Milosavljevic c35d9830ce
gnu: fc-host-tools: Update to version 8. 
* gnu/packages/embedded.scm (fc-host-tools): Update to version 8.
 2018-03-25 17:02:10 +02:00
Danny Milosavljevic 6cf2ac3cd6
gnu: Add pure. 
* gnu/packages/pure.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2018-03-25 17:02:01 +02:00
Danny Milosavljevic 1679923a2c
gnu: Add pan. 
* gnu/packages/mail.scm (pan): New variable.
 2018-03-25 17:01:34 +02:00
Danny Milosavljevic cd49e4789a
gnu: gtkspell3: Add enchant. 
* gnu/packages/gtk.scm (gtkspell3)[native-inputs]: Add enchant.
 2018-03-25 17:00:37 +02:00
Efraim Flashner 4bd2e2a5b0
gnu: clisp: Update license. 
License clarified with upstream.

* gnu/packages/lisp.scm (clisp)[license]: Correct license to gpl2+.
 2018-03-25 09:40:11 +03:00
Efraim Flashner be828bc40a
gnu: clisp: Remove ineffective 'remove-timestamp' phase. 
* gnu/packages/lisp.scm (clisp)[arguments]: Remove 'remove-timestamps'
phase.
 2018-03-25 09:40:05 +03:00
Tobias Geerinckx-Rice c77fb2d658
gnu: libdvdcss: Update to 1.4.2. 
* gnu/packages/video.scm (libdvdcss): Update to 1.4.2.
 2018-03-25 00:36:36 +01:00
Tobias Geerinckx-Rice d4297f71c6
gnu: gexiv2: Update to 0.10.8. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.8.
 2018-03-25 00:36:36 +01:00
Tobias Geerinckx-Rice a26040c5ee
gnu: ruby-ffi: Update to 1.9.23. 
* gnu/packages/libffi.scm (ruby-ffi): Update to 1.9.23.
 2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice a2b9cfa547
gnu: clutter-gst: Update to 3.0.26. 
* gnu/packages/gnome.scm (clutter-gst): Update to 3.0.26.
 2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice 4bd76eac11
gnu: python-graphviz: Update to 0.8.2. 
* gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.2.
 2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice c7da85104b
gnu: gnome-autoar: Update to 0.2.3. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.2.3.
 2018-03-25 00:36:35 +01:00
Tobias Geerinckx-Rice 4541072c11
gnu: libstrophe: Update to 0.9.2. 
* gnu/packages/messaging.scm (libstrophe): Update to 0.9.2.
 2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice 1635cb5083
gnu: hunspell: Use INVOKE. 
* gnu/packages/libreoffice.scm (hunspell)[arguments]: Substitute INVOKE
for SYSTEM* and end phase with explicit #t.
 2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice ef82b71c0f
gnu: hunspell: Update to 1.6.2. 
* gnu/packages/libreoffice.scm (hunspell): Update to 1.6.2.
 2018-03-25 00:36:34 +01:00
Tobias Geerinckx-Rice 1a52206e60
gnu: python-ly: Use PYPI-URI. 
* gnu/packages/python.scm (python-ly)[source]: Use PYPI-URI.
 2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice 36828576b3
gnu: gnome-klotski: Update to 3.22.3. 
* gnu/packages/gnome.scm (gnome-klotski): Update to 3.22.3.
 2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice 491883a6ea
gnu: aisleriot: Update to 3.22.5. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.5.
 2018-03-25 00:36:33 +01:00
Tobias Geerinckx-Rice faf44e3810
gnu: neomutt: Update to 20180323. 
* gnu/packages/mail.scm (neomutt): Update to 20180323.
 2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice e0bee0de70
gnu: ceres-solver: Update to 1.14.0. 
* gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
 2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice 4fbcc21dc3
gnu: python-gitpython: Update to 2.1.1.9. 
* gnu/packages/version-control.scm (python-gitpython): Update to 2.1.9.
 2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice 4349f3d0bd
gnu: yoshimi: Update to 1.5.7. 
* gnu/packages/music.scm (yoshimi): Update to 1.5.7.
 2018-03-25 00:36:32 +01:00
Tobias Geerinckx-Rice 904c3a4e99
gnu: r-annotate: Update to 1.56.2. 
* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.2.
 2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice 749d800850
gnu: perl-text-simpletable: Update to 2.04. 
* gnu/packages/perl.scm (perl-text-simpletable): Update to 2.04.
 2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice 810cd037a0
gnu: emacs-mmm-mode: Update to 0.5.5. 
* gnu/packages/emacs.scm (emacs-mmm-mode): Update to 0.5.5.
 2018-03-25 00:36:31 +01:00
Tobias Geerinckx-Rice 5660325eb7
gnu: autossh: Update to 1.4f. 
* gnu/packages/ssh.scm (autossh): Update to 1.4f.
 2018-03-25 00:36:30 +01:00
Tobias Geerinckx-Rice eb762cc70c
gnu: perl-www-mechanize: Update to 1.88. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.88.
 2018-03-25 00:36:30 +01:00
Tobias Geerinckx-Rice 929e2d9f98
gnu: links: Update to 2.15. 
* gnu/packages/web-browsers.scm (links): Update to 2.15.
[source]: Remove patch for fixed CVE.
* gnu/packages/patches/links-CVE-2017-11114.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-03-25 00:36:30 +01:00
Ludovic Courtès e087dad3ab
gnu: less: Update to 530. 
* gnu/packages/less.scm (less): Update to 530.
 2018-03-25 00:29:59 +01:00
Ludovic Courtès c91e0f1ab3
gnu: cuirass: Update to 326264c. 
* gnu/packages/ci.scm (cuirass): Update to 326264c.
 2018-03-25 00:19:24 +01:00
Ricardo Wurmus 4d4a5698ec
gnu: sablevm: Do not change GC, just disable stripping. 
* gnu/packages/java.scm (sablevm)[arguments]: Disable stripping; do not play
with GC settings as they have no reliable effect on build success.
 2018-03-25 00:14:30 +01:00
Ricardo Wurmus f15e2ee4e8
gnu: sablevm: Use a different GC implementation. 
This is an attempt to fix a segfault when building ant-bootstrap.

* gnu/packages/java.scm (sablevm)[arguments]: Use gencopy GC implementation.
 2018-03-24 23:00:03 +01:00
Ricardo Wurmus 15b8b5deca
gnu: sablevm-classpath: Remove unnecessary inputs. 
* gnu/packages/java.scm (sablevm-classpath)[inputs]: Remove.
 2018-03-24 23:00:03 +01:00
Efraim Flashner 29be6cfb20
gnu: Add u-boot-pine64-plus. 
* gnu/packages/bootloaders.scm (u-boot-pine64-plus): New variable.
 2018-03-24 22:15:12 +03:00
Efraim Flashner 9a1c4a6cb8
gnu: make-u-boot-package: Install 'itb' and 'dtb' files also. 
* gnu/packages/bootloaders.scm (make-u-boot-package)[arguments]: Add
'itb' and 'dtb' files to the files installed during custom 'install phase.
 2018-03-24 22:15:11 +03:00
Efraim Flashner ecff374e1c
gnu: arm-trusted-firmware-pine64-plus: New variable. 
* gnu/packages/firmware.scm (arm-trusted-firmware-pine64-plus): New
variable.
 2018-03-24 22:15:11 +03:00
Efraim Flashner e9252fd11c
gnu: make-arm-trusted-firmware: New procedure. 
* gnu/packages/firmware.scm (make-arm-trusted-firmware): New procedure.
 2018-03-24 22:15:11 +03:00
Alex Kost d591989b42
gnu: tvtime: Fix build. 
* gnu/packages/tv.scm (tvtime)[native-inputs]: Add 'pkg-config' to avoid
compilation errors.
 2018-03-24 19:36:03 +03:00
Alex Kost 1f849cba9f
gnu: dunst: Update to 1.3.1. 
* gnu/packages/dunst.scm (dunst): Update to 1.3.1.
[arguments]: Add SERVICEDIR_DBUS make flag.
[inputs]: Use 'gdk-pixbuf' instead of 'gtk'.
 2018-03-24 19:36:03 +03:00
Oleg Pykhalov bba66e7a60
gnu: streamlink: Update to 0.11.0. 
* gnu/packages/video.scm (streamlink): Update to 0.11.0.
[native-inputs]: Add python-urllib3.
 2018-03-24 09:30:02 +03:00
Chris Marusich a335f6fcc9
system: Add "guix system docker-image" command. 
* gnu/system/vm.scm (system-docker-image): New procedure.
* guix/scripts/system.scm (system-derivation-for-action): Add a case for
  docker-image, and in that case, call system-docker-image.
  (show-help): Document docker-image.
  (guix-system): Parse arguments for docker-image.
* doc/guix.texi (Invoking guix system): Document "guix system
  docker-image".
* gnu/system/examples/docker-image.tmpl: New file.
 2018-03-24 03:04:11 +01:00
Chris Marusich 8c9bf2946a
gnu: When building in a VM, share a temporary directory. 
* gnu/build/vm.scm (load-in-linux-vm): Make a shared temporary directory
  available in the VM.
* gnu/system/vm.scm (%linux-vm-file-systems): Add a corresponding entry.
 2018-03-24 03:04:10 +01:00
Chris Marusich af81311b8c
vm: Allow control of deduplication in root-partition-initializer. 
* gnu/build/vm.scm (root-partition-initializer): Add #:deduplicate?
  keyword argument.
 2018-03-24 03:04:10 +01:00
Chris Marusich 272c070962
tests: Add tests for "guix pack". 
* guix/scripts/pack.scm (bootstrap-xz): New variable.
  (%options) <--bootstrap>: New option.
  (show-help): Document the new --bootstrap option.
  (guix-pack): When --bootstrap is specified, use the bootstrap Guile,
  tar, and xz to build the pack, and do not use any profile hooks or
  locales.
* doc/guix.texi (Invoking guix pull): Document the new --bootstrap
  option.
* tests/guix-pack.sh: New file.
* Makefile.am (SH_TESTS): Add guix-pack.sh.
* gnu/packages/package-management.scm (guix) <inputs>: Add util-linux.
 2018-03-24 03:04:07 +01:00
Sahithi Yarlagadda 24fa6bcac6
gnu: Add r-catdap. 
* gnu/packages/cran.scm (r-catdap): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-03-23 21:56:39 +01:00
Leo Famulari 116c12a122
gnu: Keep Krita 3 along with Krita 4. 
* gnu/packages/kde.scm (krita-3): New variable.
 2018-03-23 15:42:01 -04:00
Gábor Boskovits 2cac889151
gnu: java-aqute-bnd-annotation: Update to 3.5.0. 
* gnu/packages/java.scm (java-aqute-bnd-annotation): Update to 3.5.0.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
 2018-03-23 20:21:37 +01:00
Tobias Geerinckx-Rice 7aff5d025d
gnu: git: Update to 2.16.3. 
* gnu/packages/version-control.scm (git): Update to 2.16.3.
 2018-03-23 14:03:52 +01:00
Tobias Geerinckx-Rice b1be07cf04
gnu: libgee: Update to 0.20.1. 
* gnu/packages/gnome.scm (libgee): Update to 0.20.1.
 2018-03-23 11:32:16 +01:00
Tobias Geerinckx-Rice cd4c6039ea
gnu: fribidi: Update to 1.0.2. 
* gnu/packages/fribidi.scm (fribidi): Update to 1.0.2.
[arguments]: Disable building documentation for now.
 2018-03-23 11:32:16 +01:00
Tobias Geerinckx-Rice ee789a411c
gnu: parallel: Update to 20180322. 
* gnu/packages/parallel.scm (parallel): Update to 20180322.
 2018-03-23 11:32:15 +01:00
Tobias Geerinckx-Rice dd8237b6c3
gnu: coq-flocq: Use predictable source URI. 
* gnu/packages/ocaml.scm (coq-flocq)[source]: Use predictable URI.
 2018-03-23 11:32:15 +01:00
Mark H Weaver 77f2ced1a6
gnu: linux-libre@4.9: Update to 4.9.89. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.89.
 2018-03-23 04:50:01 -04:00
Mark H Weaver b06e94d310
gnu: linux-libre@4.4: Update to 4.4.123. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.123.
 2018-03-23 04:49:59 -04:00
Danny Milosavljevic ec40a0501f
gnu: Add lyx. 
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/tex.scm (lyx): New variable.
 2018-03-22 23:11:17 +01:00
Jelle Licht 282e48eae9
gnu: node: Update to 9.9.0. 
* gnu/packages/node.scm (node): Update to 9.9.0.
 2018-03-22 19:15:24 +01:00
Leo Famulari 5e56dfadba
gnu: krita: Update to 4.0.0. 
* gnu/packages/kde.scm (krita): Update to 4.0.0.
 2018-03-22 13:37:25 -04:00
Leo Famulari 10e2ee7887
gnu: darktable: Update to 2.4.2. 
* gnu/packages/photo.scm (darktable): Update to 2.4.2.
 2018-03-22 12:10:55 -04:00
Ricardo Wurmus 618050a126
gnu: r-bookdown: Do not propagate ghc-pandoc. 
This package propagates r-rmarkdown, which propagates its own variant of
Pandoc.

* gnu/packages/bioinformatics.scm (r-bookdown)[propagated-inputs]: Remove
ghc-pandoc.
 2018-03-22 17:07:15 +01:00
Marius Bakke 63c295d2f5
gnu: nginx: Update to 1.13.10. 
* gnu/packages/web.scm (nginx): Update to 1.13.10.
[arguments]: Update kernel version to match glibc minimum requirement.
 2018-03-22 14:40:40 +01:00
Marius Bakke 069d0b7f91
gnu: nmap: Update to 7.70. 
* gnu/packages/admin.scm (nmap): Update to 7.70.
[source](snippet): End on #t.
[inputs]: Add ZLIB.
 2018-03-22 14:40:40 +01:00
Marius Bakke 0e4d067f9e
gnu: talloc: Update to 2.1.12. 
* gnu/packages/samba.scm (talloc): Update to 2.1.12.
 2018-03-22 14:16:36 +01:00
Marius Bakke cbcbb10a63
gnu: certbot: Update to 0.22.2. 
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.2.
 2018-03-22 14:14:09 +01:00
Marius Bakke 5da2a934b4
gnu: python-cryptography: Update to 2.2.1. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.1.
 2018-03-22 14:02:11 +01:00
Maxim Cournoyer 247384d069
gnu: Add supercollider. 
* gnu/packages/audio.scm (supercollider): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-22 12:31:00 +01:00
Maxim Cournoyer 6f976d2880
gnu: yaml-cpp: Update to 0.6.1. 
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.6.1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-22 12:30:46 +01:00
Maxim Cournoyer 7624300c84
gnu: Add boost-sync. 
* gnu/packages/boost.scm (boost-sync): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-03-22 12:30:39 +01:00
Ludovic Courtès ca5b73114f
gnu: shepherd: Update to 0.4.0. 
* gnu/packages/admin.scm (shepherd): Update to 0.4.0.  Remove patches.
* gnu/packages/patches/shepherd-close-fds.patch,
gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/services/admin.scm (%default-rotations): Remove
/var/log/shepherd.log.
 2018-03-22 11:43:30 +01:00
Ludovic Courtès 7fe1432a2e
services: rottlog: Add /var/log/debug to '%default-rotations'. 
* gnu/services/admin.scm (%rotated-files): Add "/var/log/debug".
 2018-03-22 11:43:29 +01:00
Mark H Weaver 4d7c5f6d7e
gnu: linux-libre: Update to 4.15.12. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.12.
(%linux-libre-hash): Update hash.
 2018-03-21 20:48:49 -04:00
Mark H Weaver 8ec89c358f
gnu: linux-libre@4.14: Update to 4.14.29. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.29.
(%linux-libre-4.14-hash): Update hash.
 2018-03-21 20:47:53 -04:00
Vasile Dumitrascu 4dd0f8c0c1
gnu: emacs-deferred: Update to 0.5.1. 
* gnu/packages/emacs.scm (emacs-deferred): Update to 0.5.1.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-03-22 00:09:55 +01:00
Vasile Dumitrascu 2fa6f63b16
gnu: emacs-clojure-mode: Update to 5.6.1. 
* gnu/packages/emacs.scm (emacs-clojure-mode): Update to 5.6.1.
 2018-03-22 00:08:15 +01:00
Leo Famulari b87c76dcaa
Fix copyright notice for Nils Gillmann. 
This is a followup to commit af23710ff5.

* gnu/packages/linux.scm: Fix name and email address for Nils Gillmann.
 2018-03-21 18:26:25 -04:00
Leo Famulari 4102588f85
gnu: mpd: Update to 0.20.18. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.18.
 2018-03-21 18:26:25 -04:00
Tobias Geerinckx-Rice e2f9847be0
gnu: Add tinyscheme. 
* gnu/packages/scheme.scm (tinyscheme): New public variable.
 2018-03-21 18:38:23 +01:00
Tobias Geerinckx-Rice 0d73f1481b
gnu: libosinfo: Update usb.ids. 
This follows up commit 0def912088, which
tried to use the CVS ID as the SVN revision, which unfortunately doesn't
work.

* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Update
revision and hash for ‘usb.ids’.
 2018-03-21 17:00:11 +01:00
Leo Famulari ab68cbf2ee
gnu: rawtherapee: Update to 5.4. 
* gnu/packages/photo.scm (rawtherapee): Update to 5.4.
 2018-03-21 11:43:16 -04:00
Ricardo Wurmus 363ee7a3f4
gnu: pigx-chipseq: Update to 0.0.10. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10.
[inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel,
r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble,
r-tidyr, r-htmlwidgets, and r-rmarkdown.
 2018-03-21 11:52:56 +01:00
Danny Milosavljevic 0def912088
gnu: libosinfo: Fix URL for usb.ids. 
Fixes <http://bugs.gnu.org/30890>.

* gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Fix URL of
"usb.ids".
 2018-03-21 08:23:15 +01:00
Danny Milosavljevic db6609bd10
gnu: texlive-fonts-amsfonts: Make build reproducible. 
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]<#:phases>[build]:
Make build reproducible.
 2018-03-21 01:36:50 +01:00
Leo Famulari af23710ff5
gnu: util-linux: Fix CVE-2018-7738 without grafting. 
* gnu/packages/linux.scm (util-linux)[replacement]: Remove field.
(util-linux-2.31.1): New variable.
* gnu/system.scm (%base-packages): Use util-linux-2.31.1.
 2018-03-20 17:14:22 -04:00
Tobias Geerinckx-Rice 8023f0fd03
gnu: gparted: Update to 0.31.0. 
* gnu/packages/disk.scm (gparted): Update to 0.31.0.
 2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice 8abbe5dc82
gnu: coq-flocq: Update phase style. 
* gnu/packages/ocaml.scm (coq-flocq)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
 2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice 324f192700
gnu: leocad: Use HTTPS home page. 
* gnu/packages/lego.scm (leocad)[home-page]: Use HTTPS.
 2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice 84775d65a8
gnu: leocad: Update phase style. 
* gnu/packages/lego.scm (leocad)[arguments]: Substitute INVOKE for
SYSTEM* and end all phases with an explicit #t.
 2018-03-20 19:49:47 +01:00
Tobias Geerinckx-Rice b5df3e266b
gnu: leocad: Update to 18.02. 
* gnu/packages/lego.scm (leocad): Update to 18.02.
 2018-03-20 19:49:46 +01:00
Tobias Geerinckx-Rice 7d15cf175e
gnu: gmp-ecm: Update to 7.0.4. 
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.4.
[source]: Use predictable URI.
 2018-03-20 19:49:46 +01:00
Tobias Geerinckx-Rice ef8b9a771c
gnu: r-spams: Use predictable source URI. 
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable
URI.
 2018-03-20 19:49:46 +01:00
Ricardo Wurmus d7a11f1a8d
gnu: pigx-chipseq: Update to 0.0.9. 
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9.
[inputs]: Add coreutils and grep.
 2018-03-20 19:47:37 +01:00
Vijayalakshmi 385e8614ef
gnu: Add python-logwrap. 
* gnu/packages/python.scm (python-logwrap): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2018-03-20 19:47:37 +01:00
Oleg Pykhalov 8c4bd04c86
gnu: python-ptyprocess: Update source URL. 
* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
 2018-03-20 21:43:42 +03:00
Marius Bakke 576e0ae495
gnu: rofi: Update source hash. 
The tarball was updated in-place with a bugfix; see
<https://github.com/DaveDavenport/rofi/issues/782>.

* gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash.
[arguments]: Remove phase 'add-missing-configuration-files'.
 2018-03-20 19:23:34 +01:00
ng0 4a78fd4617
Correct name and Email for ng0. 
* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2018-03-20 17:17:58 +01:00
Kei Kebreau f812145e3e
gnu: ruby-sanitize: Update to 4.6.3. 
This fixes CVE-2018-3740.

* gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
 2018-03-20 11:20:33 -04:00
宋文武 32745b71e1
gnu: cdogs-sdl: Update to commit bab20313. 
Fixes <https://bugs.gnu.org/30623>.

* gnu/packages/games.scm (cdogs-sdl): Update to commit
bab2031369b9ea2dbeb7eedbde10a43dd8ca83db.
[source]: Use git-fetch.
 2018-03-20 22:33:18 +08:00
Sahithi Yarlagadda c56739df6b
gnu: Add r-dyn. 
* gnu/packages/cran.scm (r-dyn): New variable.
 2018-03-20 15:00:52 +01:00
Ricardo Wurmus 4f1e4f33a0
gnu: pigx-bsseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
 2018-03-20 14:56:44 +01:00
Marius Bakke dc7e07c9b9
Merge branch 'staging' 2018-03-20 14:13:05 +01:00
Ricardo Wurmus 616446ffbf
gnu: pigx-rnaseq: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3.
[inputs]: Add gzip.
 2018-03-20 12:20:51 +01:00
Tobias Geerinckx-Rice c657716ede
gnu: dnsmasq: Fix description typos. 
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
 2018-03-20 02:03:52 +01:00
Tobias Geerinckx-Rice 4e6c51d4eb
gnu: dnsmasq: Update to 2.79. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
 2018-03-20 02:03:52 +01:00
Marius Bakke a3e2b72ca9
gnu: certbot: Update to 0.22.1. 
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
 2018-03-20 01:40:07 +01:00
Marius Bakke 818e6d9704
gnu: python-cryptography: Update to 2.2. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors,
python-cryptography): Update to 2.2.
 2018-03-20 01:25:10 +01:00
Marius Bakke c9838530d3
gnu: imlib2: Update to 1.5.1. 
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
 2018-03-20 01:24:48 +01:00
Marius Bakke 264cb77646
gnu: imagemagick: Update to 6.9.9-39. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
 2018-03-20 01:09:16 +01:00
Marius Bakke 0d729c5b14
gnu: zziplib: Correct license. 
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
 2018-03-20 01:06:43 +01:00
Marius Bakke 3f986ff657
gnu: zziplib: Update to 0.13.69. 
* gnu/packages/compression.scm (zziplib): Update to 0.13.69.
[home-page]: Use new GitHub home.
[source](uri): Adjust accordingly.
[arguments]: Remove.
 2018-03-20 00:56:04 +01:00
Marius Bakke 712be306a8
gnu: rofi: Update to 1.5.1. 
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
 2018-03-20 00:34:00 +01:00