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Author SHA1 Message Date
Marius Bakke adde15186d
gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81a0c. 
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b.
 2018-11-05 23:53:30 +01:00
Marius Bakke 208e82297c
gnu: xapian: Update to 1.4.9. 
* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/search.scm (xapian): Update to 1.4.9.
[source](patches): Remove.
(python-xapian-bindings): Update to 1.4.9.
 2018-11-05 23:46:38 +01:00
Marius Bakke d79c8148cc
gnu: libssh: Update to 0.7.7. 
* gnu/packages/ssh.scm (libssh): Update to 0.7.7.
 2018-11-05 23:46:38 +01:00
Marius Bakke b5a887637c
gnu: strace: Update to 4.25. 
* gnu/packages/linux.scm (strace): Update to 4.25.
 2018-11-05 23:46:38 +01:00
Marius Bakke 876428dd98
gnu: libmtp: Update to 1.1.16. 
* gnu/packages/libusb.scm (libmtp): Update to 1.1.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke 039241bc96
gnu: libgit2: Update to 0.26.8. 
* gnu/packages/version-control.scm (libgit2): Update to 0.26.8.
 2018-11-05 23:46:38 +01:00
Marius Bakke c98a7e6b91
gnu: i3-wm: Update to 4.16. 
* gnu/packages/wm.scm (i3-wm): Update to 4.16.
 2018-11-05 23:46:38 +01:00
Marius Bakke 9c415f96ec
gnu: libgphoto2: Update to 2.5.20. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20.
 2018-11-05 23:46:38 +01:00
Marius Bakke 66044a3698
gnu: glm: Update to 0.9.9.3. 
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke 64b60f38e7
gnu: ffmpeg: Update to 4.0.3. 
* gnu/packages/video.scm (ffmpeg): Update to 4.0.3.
 2018-11-05 23:46:38 +01:00
Marius Bakke c5e5711002
gnu: ffmpeg@3.4: Update to 3.4.5. 
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5.
 2018-11-05 23:46:37 +01:00
Marius Bakke 196653145a
gnu: feh: Update to 2.28.1. 
* gnu/packages/image-viewers.scm (feh): Update to 2.28.1.
 2018-11-05 23:46:37 +01:00
Marius Bakke 00815eea38
gnu: libsoup: Update to 2.64.2. 
* gnu/packages/gnome.scm (libsoup): Update to 2.64.2.
 2018-11-05 23:46:37 +01:00
Marius Bakke 0a56ffdf1f
gnu: mono: Update home page. 
* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS.
 2018-11-05 23:46:37 +01:00
Leo Famulari 288d24800d
gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}]. 
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6.
 2018-11-05 16:22:11 -05:00
Pierre Neidhardt 426ffb830a
gnu: emacs-mu4e-conversation: Update to 20181105. 
* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105.
 2018-11-05 20:22:06 +01:00
Pierre Neidhardt 695db2f98a
gnu: Add emacs-helm-slime. 
* gnu/packages/emacs.scm (emacs-helm-slime): New variable.
 2018-11-05 13:58:33 +01:00
Mark H Weaver c9f3d38be4
gnu: linux-libre: Update to 4.19.1. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.1.
(%linux-libre-hash): Update hash.
 2018-11-05 04:00:45 -05:00
Mark H Weaver 28c717213d
gnu: linux-libre@4.14: Update to 4.14.79. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.79.
(%linux-libre-4.14-hash): Update hash.
 2018-11-05 04:00:43 -05:00
Eric Bavier cddc044ce7
libreoffice: honor '--cores=...' during build. 
* gnu/packages/libreoffice.scm (libreoffice)[configure-flags]: Add
'--with-parallelism' flag.
 2018-11-04 21:56:39 -06:00
Danny Milosavljevic 64eb038eef
gnu: Add fswatch. 
* gnu/packages/monitoring.scm (fswatch): New variable.
 2018-11-05 03:01:21 +01:00
Luther Thompson 1417f50317
gnu: python-ilinkedlist: Update to 0.2.0. 
* gnu/packages/python.scm (python-ilinkedlist): Update to 0.2.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Vagrant Cascadian b6e9514864
gnu: pelican: Update to 3.7.1. 
* gnu/packages/python.scm (pelican): Update to 3.7.1.
  [home-page]: Use HTTPS URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Pkill -9 c834bd3bb2
gnu: xonotic: Add icon and category to desktop files. 
* gnu/packages/games.scm (xonotic): Add icon ("xonotic") and category
("Game") to the .desktop files for Xonotic.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-11-05 00:08:47 +01:00
Ludovic Courtès 688d1a01e4
artwork: Clone over HTTPS. 
Suggested by Leo Famulari <leo@famulari.name>
at <https://lists.gnu.org/archive/html/help-guix/2018-11/msg00039.html>.

* gnu/artwork.scm (%artwork-repository): Switch to HTTPS URL.
 2018-11-05 00:08:47 +01:00
Ludovic Courtès ab3c60ace3
install: Parameterize the profile name for 'populate-single-profile-directory'. 
* gnu/build/install.scm (populate-single-profile-directory): Add
 #:profile-name.  Replace hard-coded occurrences of "guix-profile" with
PROFILE-NAME.  Make the symlink part under /root a function of
PROFILE-NAME.
 2018-11-05 00:08:46 +01:00
Pierre Neidhardt 97b7b96efc
gnu: go-github-com-urfave-cli: Remove duplicate declaration. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): Remove duplicate declaration.
 2018-11-04 23:33:24 +01:00
Efraim Flashner 30012b7408
gnu: myrepos: Wrap the webcheckout binary. 
* gnu/packages/version-control.scm (myrepos)[arguments]: Add a custom
'wrap-webcheckout phase to wrap webcheckout with its perl libraries.
[inputs]: Add perl-encode-locale, perl-html-parser, perl-http-date,
perl-http-message, perl-libwww, perl-try-tiny, perl-uri.
 2018-11-04 12:45:27 +02:00
Efraim Flashner f909e21797
gnu: debian-archive-keyring: Update to 2018.1. 
* gnu/packages/debian.scm (debian-archive-keyring): Update to 2018.1.
[source]: Download from git repository.
 2018-11-04 12:00:13 +02:00
Efraim Flashner 2e77bbed71
gnu: ruby@2.3: Update to 2.3.8. 
* gnu/packages/ruby.scm (ruby@2.3): Update to 2.3.8.
 2018-11-04 12:00:13 +02:00
Efraim Flashner d4b5e4bb73
gnu: debootstrap: Update to 1.0.109. 
* gnu/packages/debian.scm (debootstrap): Update to 1.0.109.
 2018-11-04 12:00:10 +02:00
Arun Isaac 3e84ce51fb
gnu: mpop: Update to 1.4.0. 
* gnu/packages/mail.scm (mpop): Update to 1.4.0.
 2018-11-04 10:36:17 +05:30
Efraim Flashner e9f305a1c8
gnu: sbcl-lift: Don't keep the bundled website. 
* gnu/packages/lisp.scm (sbcl-lift)[source]: Remove bundled website.
[arguments]: Remove custom 'make-gzips-writable phase.
 2018-11-03 20:43:35 +02:00
Ludovic Courtès 0e091b3e93
gnu: totem: Update to 3.26.2. 
* gnu/packages/gnome.scm (totem): Update to 3.26.2.
 2018-11-03 15:44:40 +01:00
Ludovic Courtès 504f0cf198
gnu: emacs-debbugs: Update to 0.16. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.16.
 2018-11-03 15:44:24 +01:00
Ludovic Courtès a7c8574f39
gnu: perl-image-exiftool: Update to 11.11. 
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.11.
 2018-11-03 15:16:42 +01:00
Ludovic Courtès 46c8f53ba8
gnu: emacs-dired-du: Update to 0.5.1. 
* gnu/packages/emacs.scm (emacs-dired-du): Update to 0.5.1.
 2018-11-03 15:16:20 +01:00
Ludovic Courtès 8e5c59868c
gnu: diffoscope: Update to 104. 
* gnu/packages/package-management.scm (diffoscope): Update to 104.
 2018-11-03 15:16:02 +01:00
Arun Isaac b1c7f5fff9
gnu: emacs-emms: Update to 5.1. 
* gnu/packages/emacs.scm (emacs-emms): Update to 5.1.
 2018-11-03 19:14:05 +05:30
Tobias Geerinckx-Rice 3995e85462
gnu: tor: Update to 0.3.4.9. 
* gnu/packages/tor.scm (tor): Update to 0.3.4.9.
 2018-11-02 19:51:12 +01:00
Julien Lepiller ff349415b2
gnu: python-apache-libcloud: Update to 2.3.0. 
* gnu/packages/python.scm (python-apache-libcloud)
(python2-apache-libcloud): Update to 2.3.0.
 2018-11-02 14:32:24 +01:00
Danny Milosavljevic 722aac1ea1
Merge remote-tracking branch 'origin/wip-rust' into master. 2018-11-02 11:01:45 +01:00
Leo Famulari b3325eb306
gnu: Go 1.11: Avoid unnecessary store references. 
This shrinks the closure of Go 1.11 from 1379 MiB to 581 MiB.

Fixes <https://bugs.gnu.org/32949>.

* gnu/packages/golang.scm (go-1.11)[arguments]: Add a 'delete-extraneous-files'
phase.
 2018-11-01 23:23:09 -04:00
Leo Famulari 7571ec3576
gnu: MPD: Update to 0.20.23. 
* gnu/packages/mpd.scm (mpd): Update to 0.20.23.
 2018-11-01 15:30:05 -04:00
Leo Famulari 33279c2a19
gnu: mpd-mpc: Update to 0.31. 
* gnu/packages/mpd.scm (mpd-mpc): Update to 0.31.
[native-inputs]: Add python-sphinx.
 2018-11-01 15:30:05 -04:00
Leo Famulari 361dd8a556
gnu: icecast: Update to 2.4.4 [fixes CVE-2018-18820]. 
* gnu/packages/xiph.scm (icecast): Update to 2.4.4.
 2018-11-01 12:33:14 -04:00
Rutger Helling d7ca1899aa
gnu: mame: Update to 0.203. 
* gnu/packages/emulators.scm (mame): Update to 0.203.
 2018-11-01 09:24:52 +01:00
Rutger Helling a769a4d432
gnu: xpra: Update to 2.4.1. 
* gnu/packages/xorg.scm (xpra): Update to 2.4.1.
 2018-11-01 08:32:45 +01:00
Rutger Helling e7039f10ec
gnu: dolphin-emu: Use ffmpeg instead of ffmpeg@3.4. 
* gnu/packages/emulators.scm (dolphin-emu): Use ffmpeg instead of ffmpeg@3.4.
 2018-11-01 08:20:13 +01:00
Rutger Helling ee3dd7a83a
gnu: sdl2: Update to 2.0.9. 
* gnu/packages/sdl.scm (sdl2): Update to 2.0.9.
 2018-11-01 08:20:13 +01:00
Tobias Geerinckx-Rice 66a2a47117
gnu: whois: Update to 5.4.0. 
* gnu/packages/networking.scm (whois): Update to 5.4.0.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 38fda1cc36
gnu: highlight: Update to 3.47. 
* gnu/packages/pretty-print.scm (highlight): Update to 3.47.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice a72d337fbc
gnu: python-jsonrpclib-pelix: Update to 0.3.2. 
* gnu/packages/python.scm (python-jsonrpclib-pelix): Update to 0.3.2.
[arguments]: Disable #:tests?.
 2018-11-01 04:34:25 +01:00
Tobias Geerinckx-Rice 60ed87871d
gnu: python-pynacl: Update to 1.3.0. 
* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.3.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 351a12b0a7
gnu: oniguruma: Update to 6.9.0. 
* gnu/packages/textutils.scm (oniguruma): Update to 6.9.0.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 33bddd309c
gnu: motion: Install translations. 
* gnu/packages/video.scm (motion)[native-inputs]: Add gettext-minimal.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 2ea678fabf
gnu: motion: Don't use unstable tarball. 
* gnu/packages/video.scm (motion)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-11-01 04:34:24 +01:00
Tobias Geerinckx-Rice 4fbcfc1482
Keep (gnu packages video) module imports in order. 
* gnu/packages/video.scm (define-module): Re-order module imports
alphabetically.
 2018-11-01 04:33:54 +01:00
Tobias Geerinckx-Rice c3069cd183
gnu: motion: Update to 4.2. 
* gnu/packages/video.scm (motion): Update to 4.2.
 2018-11-01 04:32:35 +01:00
Tobias Geerinckx-Rice 2930a39b16
gnu: julia: Update objconv input to 2018-10-07. 
* gnu/packages/julia.scm (julia)[input]: Update objconf to 2018-10-07.
 2018-11-01 04:32:35 +01:00
Efraim Flashner c16913d34d
gnu: myrepos: Update to 1.20180726. 
* gnu/packages/version-control.scm (myrepos): Update to 1.20180726.
[source]: Remove patch.
* gnu/packages/patches/myrepos-CVE-2018-7032.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-31 21:57:02 +02:00
Leo Famulari c438e0cc74
gnu: curl: Update grafted replacement to 7.62.0 [security fixes]. 
Fixes CVE-2018-{16839,16840,16842}.

* gnu/packages/curl.scm (curl)[replacement]: Update to 7.62.0.
(curl-7.61.1): Replace with ...
(curl-7.62.0): ... new variable.
 2018-10-31 13:54:20 -04:00
Rutger Helling 124e9d6e0a
gnu: dolphin-emu: Update to commit 22ddd11. 
* gnu/packages/emulators.scm (dolphin-emu): Update to commit 22ddd11.
[arguments]: Return #t with phase 'fixgcc7.
 2018-10-31 10:40:04 +01:00
Rutger Helling 3126bee69a
gnu: wine-staging: Update to 3.19. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.19.
* gnu/packages/wine.scm (wine-staging): Update to 3.19.
 2018-10-31 09:39:55 +01:00
Mark H Weaver a45a92ccd8
gnu: webkitgtk@2.22: Update to 2.22.3. 
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.3.
 2018-10-31 01:47:52 -04:00
Arun Isaac c7ac8e36e2
gnu: quaternion: Update to 0.0.9.3. 
* gnu/packages/messaging.scm (quaternion): Update to 0.0.9.3.
[inputs]: Add qtquickcontrols, qtsvg and qttools.
[arguments]: Remove fix-libqmatrixclient-dynamic-linking phase. Add
wrap-program phase.
 2018-10-31 09:31:59 +05:30
Arun Isaac c6588749a6
gnu: libqmatrixclient: Update to 0.4.0. 
* gnu/packages/messaging.scm (libqmatrixclient): Update to 0.4.0.
 2018-10-31 09:31:59 +05:30
Tobias Geerinckx-Rice b590951ff2
gnu: meandmyshadow: Update home page. 
* gnu/packages/games.scm (meandmyshadow)[home-page]: Follow permanent
redirect.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 1d9a9d27ae
gnu: meandmyshadow: Update to 0.5. 
* gnu/packages/games.scm (meandmyshadow): Update to 0.5.
[source]: Add unreleased bugfix patch.
[arguments]: Remove obsolete ‘set-sdl'paths’ phase.
[inputs]: Switch to SDL 2. Add lua. Remove libx11, mesa, and glu.
* gnu/packages/patches/meandmyshadow-define-paths-earlier.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2018-10-31 02:31:18 +01:00
Tobias Geerinckx-Rice 4cae7e67f3
gnu: hyperrogue: Update to 10.4x. 
* gnu/packages/games.scm (hyperrogue): Update to 10.4x.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice 21fc352bad
gnu: yosys: Don't use unstable tarball. 
* gnu/packages/fpga.scm (yosys)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-30 23:40:43 +01:00
Tobias Geerinckx-Rice becee7029f
gnu: disorderfs: Update to 0.5.5. 
* gnu/packages/file-systems.scm (disorderfs): Update to 0.5.5.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 58cd3123ac
gnu: pulseview: Update to 0.4.1. 
* gnu/packages/electronics.scm (pulseview): Update to 0.4.1.
[arguments]: Remove CMAKE_CXX_FLAGS from #:configure-flags. (Keep)
build(ing) the unit tests. Add a ‘remove-empty-doc-directory’ phase.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 61c58b7827
gnu: sigrok-cli: Update to 0.7.1. 
* gnu/packages/electronics.scm (sigrok-cli): Update to 0.7.1.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 295fc4152a
gnu: cloc: Update to 1.80. 
* gnu/packages/code.scm (cloc): Update to 1.80.
 2018-10-30 23:40:42 +01:00
Tobias Geerinckx-Rice 1204402a90
gnu: python-partd: Update to 0.3.9. 
* gnu/packages/python.scm (python-partd): Update to 0.3.9.
 2018-10-30 23:40:42 +01:00
Ricardo Wurmus fd649d1e68
gnu: Add r-r2glmm. 
* gnu/packages/cran.scm (r-r2glmm): New variable.
 2018-10-30 22:47:35 +01:00
Ricardo Wurmus 7c02dd6268
gnu: Add r-lmertest. 
* gnu/packages/cran.scm (r-lmertest): New variable.
 2018-10-30 22:47:26 +01:00
Ricardo Wurmus 49863fd695
gnu: Add r-afex. 
* gnu/packages/cran.scm (r-afex): New variable.
 2018-10-30 22:47:18 +01:00
Ricardo Wurmus 20ff6e3a34
gnu: Add r-mvabund. 
* gnu/packages/cran.scm (r-mvabund): New variable.
 2018-10-30 22:47:10 +01:00
Ricardo Wurmus 4fb35ebd8d
gnu: Add r-rcppgsl. 
* gnu/packages/cran.scm (r-rcppgsl): New variable.
 2018-10-30 22:47:00 +01:00
Ricardo Wurmus 373cef0a0c
gnu: Add r-tweedie. 
* gnu/packages/cran.scm (r-tweedie): New variable.
 2018-10-30 22:46:47 +01:00
Ricardo Wurmus 32499b26e6
gnu: Add r-clusteval. 
* gnu/packages/cran.scm (r-clusteval): New variable.
 2018-10-30 22:13:01 +01:00
Ricardo Wurmus 7a06cdfa8c
gnu: r-analytics: Update to 3.0. 
* gnu/packages/cran.scm (r-analytics): Update to 3.0.
[propagated-inputs]: Add r-vim.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus e5f9e9fa79
gnu: r-radiant-data: Update to 0.9.7. 
* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.7.
[propagated-inputs]: Add r-shinyfiles and r-summarytools.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 39528a5ee9
gnu: r-pracma: Update to 2.1.8. 
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8.
[propagated-inputs]: Remove r-quadprog.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 4633c8e6fc
gnu: r-shinydashboard: Update to 0.7.1. 
* gnu/packages/web.scm (r-shinydashboard): Update to 0.7.1.
[propagated-inputs]: Add r-promises.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 65279cc8f3
gnu: Add r-shinyfiles. 
* gnu/packages/web.scm (r-shinyfiles): New variable.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus a056e2251e
gnu: r-htmlwidgets: Update to 1.3. 
* gnu/packages/web.scm (r-htmlwidgets): Update to 1.3.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus f697ef4a0d
gnu: r-servr: Update to 0.11. 
* gnu/packages/web.scm (r-servr): Update to 0.11.
 2018-10-30 21:48:10 +01:00
Ricardo Wurmus 8871a51350
gnu: r-webshot: Update to 0.5.1. 
* gnu/packages/cran.scm (r-webshot): Update to 0.5.1.
[propagated-inputs]: Add r-callr; remove r-processx and r-withr.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus d42f741035
gnu: r-dendextend: Update to 1.9.0. 
* gnu/packages/cran.scm (r-dendextend): Update to 1.9.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus 31c8d9fe00
gnu: r-emmeans: Update to 1.3.0. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.0.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus bec74196ea
gnu: r-abps: Update to 0.3. 
* gnu/packages/cran.scm (r-abps): Update to 0.3.
 2018-10-30 21:48:09 +01:00
Ricardo Wurmus 464676a970
gnu: r-proc: Update to 1.13.0. 
* gnu/packages/cran.scm (r-proc): Update to 1.13.0.
 2018-10-30 21:48:03 +01:00
Ricardo Wurmus 71d995392b
gnu: r-rdpack: Update to 0.10-1. 
* gnu/packages/cran.scm (r-rdpack): Update to 0.10-1.
 2018-10-30 21:47:54 +01:00
Ricardo Wurmus 081af9fae7
gnu: r-hdf5r: Update to 1.0.1. 
* gnu/packages/cran.scm (r-hdf5r): Update to 1.0.1.
 2018-10-30 21:47:46 +01:00
Ricardo Wurmus 08645fcff5
gnu: r-fansi: Update to 0.4.0. 
* gnu/packages/cran.scm (r-fansi): Update to 0.4.0.
 2018-10-30 21:47:37 +01:00
Ricardo Wurmus 7608984fe9
gnu: r-later: Update to 0.7.5. 
* gnu/packages/cran.scm (r-later): Update to 0.7.5.
 2018-10-30 21:47:28 +01:00
Ricardo Wurmus 80234d3294
gnu: r-maptools: Update to 0.9-4. 
* gnu/packages/cran.scm (r-maptools): Update to 0.9-4.
 2018-10-30 21:47:20 +01:00
Ricardo Wurmus fda8dd58c2
gnu: r-shinyace: Update to 0.3.2. 
* gnu/packages/cran.scm (r-shinyace): Update to 0.3.2.
 2018-10-30 21:47:06 +01:00
Ricardo Wurmus 02c57c018a
gnu: r-np: Update to 0.60-9. 
* gnu/packages/cran.scm (r-np): Update to 0.60-9.
 2018-10-30 21:46:57 +01:00
Ricardo Wurmus 44de41b572
gnu: r-expm: Update to 0.999-3. 
* gnu/packages/cran.scm (r-expm): Update to 0.999-3.
 2018-10-30 21:46:48 +01:00
Ricardo Wurmus 484e81f73a
gnu: r-cubature: Update to 1.4-1. 
* gnu/packages/cran.scm (r-cubature): Update to 1.4-1.
 2018-10-30 21:46:36 +01:00
Ricardo Wurmus 905734fd7c
gnu: r-extradistr: Update to 1.8.10. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.8.10.
 2018-10-30 21:46:26 +01:00
Ricardo Wurmus 534bf85b9d
gnu: r-ttr: Update to 0.23-4. 
* gnu/packages/cran.scm (r-ttr): Update to 0.23-4.
 2018-10-30 21:46:17 +01:00
Ricardo Wurmus dda4ce560f
gnu: r-tinytex: Update to 0.9. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.9.
 2018-10-30 21:46:10 +01:00
Ricardo Wurmus a8de3090d8
gnu: r-xfun: Update to 0.4. 
* gnu/packages/cran.scm (r-xfun): Update to 0.4.
 2018-10-30 21:46:00 +01:00
Ricardo Wurmus 8c456dff26
gnu: r-fitdistrplus: Update to 1.0-11. 
* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-11.
[propagated-inputs]: Add r-npsurv.
 2018-10-30 21:45:51 +01:00
Ricardo Wurmus bba80fadbe
gnu: r-magic: Update to 1.5-9. 
* gnu/packages/cran.scm (r-magic): Update to 1.5-9.
 2018-10-30 21:45:42 +01:00
Ricardo Wurmus 5621b8403b
gnu: r-sm: Update to 2.2-5.6. 
* gnu/packages/cran.scm (r-sm): Update to 2.2-5.6.
 2018-10-30 21:45:32 +01:00
Ricardo Wurmus 870faab4b7
gnu: r-xts: Update to 0.11-1. 
* gnu/packages/cran.scm (r-xts): Update to 0.11-1.
 2018-10-30 21:45:16 +01:00
Ricardo Wurmus 16a39c2d56
gnu: r-ggridges: Update to 0.5.1. 
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.1.
 2018-10-30 21:45:07 +01:00
Ricardo Wurmus 9e82d6080e
gnu: r-cli: Update to 1.0.1. 
* gnu/packages/cran.scm (r-cli): Update to 1.0.1.
 2018-10-30 21:44:59 +01:00
Ricardo Wurmus 2b8126a4ec
gnu: r-reshape: Update to 0.8.8. 
* gnu/packages/cran.scm (r-reshape): Update to 0.8.8.
 2018-10-30 21:44:48 +01:00
Ricardo Wurmus ecdfca05c8
gnu: r-ffbase: Update to 0.12.5. 
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.5.
 2018-10-30 21:44:38 +01:00
Ricardo Wurmus 674c818560
gnu: r-rcpp: Update to 0.12.19. 
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.19.
 2018-10-30 21:44:28 +01:00
Ricardo Wurmus 0ab28e5450
gnu: r-pkgload: Update to 1.0.1. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.1.
 2018-10-30 21:43:38 +01:00
Ricardo Wurmus 2657e666cb
gnu: r-pkgbuild: Update to 1.0.2. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.0.2.
[propagated-inputs]: Add r-cli and r-prettyunits.
 2018-10-30 21:43:28 +01:00
Ricardo Wurmus 7e127ab128
gnu: r-ps: Update to 1.2.0. 
* gnu/packages/cran.scm (r-ps): Update to 1.2.0.
 2018-10-30 21:43:19 +01:00
Ricardo Wurmus b62e104b84
gnu: r-ape: Update to 5.2. 
* gnu/packages/cran.scm (r-ape): Update to 5.2.
 2018-10-30 21:43:10 +01:00
Ricardo Wurmus 1c9906c2dd
gnu: r-reprex: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reprex): Update to 0.2.1.
[propagated-inputs]: Add r-fs, remove r-knitr.
 2018-10-30 21:42:59 +01:00
Ricardo Wurmus 6b451c0801
gnu: r-gprofiler: Update to 0.6.7. 
* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.7.
 2018-10-30 21:42:48 +01:00
Ricardo Wurmus 4fc6609a0c
gnu: r-keggrest: Update to 1.20.2. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.2.
 2018-10-30 21:42:39 +01:00
Ricardo Wurmus 67cfb83ff1
gnu: r-msnbase: Update to 2.6.4. 
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.6.4.
 2018-10-30 21:42:31 +01:00
Ricardo Wurmus 807d961cc9
gnu: r-methylkit: Update to 1.6.3. 
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.6.3.
 2018-10-30 21:42:20 +01:00
Ricardo Wurmus ac0166450d
gnu: r-wgcna: Update to 1.66. 
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.66.
 2018-10-30 21:42:09 +01:00
Ricardo Wurmus 1182460750
gnu: r-go-db: Update to 3.6.0. 
* gnu/packages/bioinformatics.scm (r-go-db): Update to 3.6.0.
 2018-10-30 21:42:00 +01:00
Ricardo Wurmus 466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
 2018-10-30 21:41:12 +01:00
Ricardo Wurmus dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
 2018-10-30 21:40:57 +01:00
Ricardo Wurmus 72408357fa
gnu: r-genomicranges: Update to 1.32.7. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
 2018-10-30 21:40:48 +01:00
Ricardo Wurmus 9dad1957ab
gnu: r-limma: Update to 3.36.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
 2018-10-30 21:40:40 +01:00
Ricardo Wurmus 57cf6a14f0
gnu: r-edger: Update to 3.22.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
 2018-10-30 21:40:32 +01:00
Ricardo Wurmus eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
 2018-10-30 21:40:22 +01:00
Ricardo Wurmus e563acb96b
gnu: r-iranges: Update to 2.14.12. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
 2018-10-30 21:40:12 +01:00
Ricardo Wurmus 192c19f484
gnu: r-vegan: Update to 2.5-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
 2018-10-30 21:40:00 +01:00
Ricardo Wurmus 696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus 6ab5670aba
gnu: r-nloptr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
 2018-10-30 21:39:39 +01:00
Ricardo Wurmus c5bd8a7c23
gnu: r-devtools: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
 2018-10-30 21:39:29 +01:00
Ricardo Wurmus aa99568639
gnu: r-evaluate: Update to 0.12. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
 2018-10-30 21:39:16 +01:00
Ricardo Wurmus 60aac7ec16
gnu: r-robustbase: Update to 0.93-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
 2018-10-30 21:39:06 +01:00
Ricardo Wurmus 16508df1d3
gnu: r-cardata: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
 2018-10-30 21:38:55 +01:00
Ricardo Wurmus 98a4b9d040
gnu: r-zoo: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
 2018-10-30 21:38:35 +01:00
Ricardo Wurmus 834f203c07
gnu: r-tidyselect: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
 2018-10-30 21:38:25 +01:00
Ricardo Wurmus 33fb92aacd
gnu: r-doparallel: Update to 1.0.14. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
 2018-10-30 21:38:16 +01:00
Ricardo Wurmus 3ea7aefd59
gnu: r-snow: Update to 0.4-3. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
 2018-10-30 21:38:03 +01:00
Ricardo Wurmus 62a7492c90
gnu: r-plotrix: Update to 3.7-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
 2018-10-30 21:37:53 +01:00
Ricardo Wurmus 943cab4f72
gnu: r-rstudioapi: Update to 0.8. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
 2018-10-30 21:37:35 +01:00
Ricardo Wurmus 960425c9e3
gnu: r-commonmark: Update to 1.6. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
 2018-10-30 21:37:25 +01:00
Ricardo Wurmus e028eaa992
gnu: r-coda: Update to 0.19-2. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
 2018-10-30 21:37:14 +01:00
Ricardo Wurmus 672ba7494b
gnu: r-data-table: Update to 1.11.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
 2018-10-30 21:37:03 +01:00
Ricardo Wurmus f75ee8c691
gnu: r-dplyr: Update to 0.7.7. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
 2018-10-30 21:36:54 +01:00
Ricardo Wurmus 17f6198f06
gnu: r-rlang: Update to 0.3.0.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
 2018-10-30 21:36:44 +01:00
Ricardo Wurmus 822863f8f9
gnu: r-r6: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
 2018-10-30 21:36:35 +01:00
Ricardo Wurmus 3a83251c4f
gnu: r-testthat: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
 2018-10-30 21:36:24 +01:00
Ricardo Wurmus cb448dd251
gnu: r-microbenchmark: Update to 1.4-6. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
 2018-10-30 21:36:13 +01:00
Ricardo Wurmus 9f7438355d
gnu: r-mine: Update to 0.6. 
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
 2018-10-30 21:36:04 +01:00
Ricardo Wurmus 9413424d2d
gnu: r-ggplot2: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
 2018-10-30 21:35:52 +01:00
Ricardo Wurmus 058394967c
gnu: r-digest: Update to 0.6.18. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
 2018-10-30 21:35:40 +01:00
Ricardo Wurmus b85f805090
gnu: r-mgcv: Update to 1.8-25. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
 2018-10-30 21:35:26 +01:00
Ricardo Wurmus 2f5e8f6094
gnu: r-mass: Update to 7.3-51. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
 2018-10-30 21:35:12 +01:00
Ricardo Wurmus 2ea75a8369
gnu: Add r-npsurv. 
* gnu/packages/cran.scm (r-npsurv): New variable.
 2018-10-30 21:35:03 +01:00
Ricardo Wurmus 7c7ee6cf4c
gnu: Add r-lsei. 
* gnu/packages/cran.scm (r-lsei): New variable.
 2018-10-30 21:34:55 +01:00
Ricardo Wurmus 74cc74e434
gnu: Add r-summarytools. 
* gnu/packages/cran.scm (r-summarytools): New variable.
 2018-10-30 21:34:45 +01:00
Ricardo Wurmus 319a80ce96
gnu: Add r-pander. 
* gnu/packages/cran.scm (r-pander): New variable.
 2018-10-30 21:34:35 +01:00
Ricardo Wurmus 9b02d1a11e
gnu: Add r-rapportools. 
* gnu/packages/cran.scm (r-rapportools): New variable.
 2018-10-30 21:34:25 +01:00
Ricardo Wurmus 5df4e27fec
gnu: Add r-rcmdcheck. 
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
 2018-10-30 21:34:15 +01:00
Ricardo Wurmus 7d8f34707a
gnu: Add r-xopen. 
* gnu/packages/cran.scm (r-xopen): New variable.
 2018-10-30 21:34:05 +01:00
Ricardo Wurmus cbc8e6dd4a
gnu: Add r-remotes. 
* gnu/packages/cran.scm (r-remotes): New variable.
 2018-10-30 21:33:56 +01:00
Ricardo Wurmus 993426244e
gnu: Add r-sessioninfo. 
* gnu/packages/cran.scm (r-sessioninfo): New variable.
 2018-10-30 21:33:47 +01:00
Ricardo Wurmus efefd3ec42
gnu: Add r-usethis. 
* gnu/packages/cran.scm (r-usethis): New variable.
 2018-10-30 21:33:37 +01:00
Ricardo Wurmus 153e5b2ddc
gnu: Add r-clisymbols. 
* gnu/packages/cran.scm (r-clisymbols): New variable.
 2018-10-30 21:33:25 +01:00
Ricardo Wurmus d6871153c8
gnu: Add r-fs. 
* gnu/packages/cran.scm (r-fs): New variable.
 2018-10-30 21:33:13 +01:00
Ricardo Wurmus 21405e81e7
gnu: Add r-gh. 
* gnu/packages/cran.scm (r-gh): New variable.
 2018-10-30 21:33:00 +01:00
Ricardo Wurmus 03f8011220
gnu: Add r-ini. 
* gnu/packages/cran.scm (r-ini): New variable.
 2018-10-30 21:32:45 +01:00
Danny Milosavljevic 4df3e06210
gnu: rust: Document upstream's assessment. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Add URL.
 2018-10-30 20:42:04 +01:00
Danny Milosavljevic 52bc7df1a1
gnu: rust: Remove binary bootstrapper. 
* gnu/packages/rust.scm (rust-bootstrap): Delete variable.
 2018-10-30 20:42:00 +01:00
Danny Milosavljevic 44d530ef09
gnu: rust@1.23.0: Bootstrap from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23): Bootstrap from rust@1.22.0.
 2018-10-30 20:41:55 +01:00
Danny Milosavljevic a75b8c08c0
gnu: rust@1.23.0: Inherit from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23)[inherit]: Inherit from rust-1.22.
[arguments]: Inherit from rust-1.22.  Delete "remove-ar" phase.
 2018-10-30 20:41:50 +01:00
Danny Milosavljevic 7bf169f75c
gnu: rust: Hide "ar" entry from rust@1.21.0. 
* gnu/packages/rust.scm (rust-1.21)[arguments]<#:phases>[remove-ar]: New
phase.
 2018-10-30 20:41:45 +01:00
Danny Milosavljevic 46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
 2018-10-30 20:20:55 +01:00
Efraim Flashner a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
 2018-10-30 11:15:40 +02:00
Efraim Flashner 24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-30 11:15:39 +02:00
Efraim Flashner e726f0939e
gnu: mupdf: Update license list. 
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
 2018-10-30 11:15:36 +02:00
Efraim Flashner b1435fe735
gnu: mupdf: Update to 1.14. 
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
 2018-10-30 11:15:09 +02:00
Efraim Flashner f8ddf719f3
gnu: mujs: Install shared library. 
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
 2018-10-30 11:03:48 +02:00
Efraim Flashner 1371e2250a
gnu: mujs: Update to 1.0.5. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
 2018-10-30 11:03:06 +02:00
Leo Famulari a2717e6986
gnu: calcurse: Use HTTPS URLs. 
Reported by Marco van Hulten <marco@hulten.org>.

* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
 2018-10-29 20:45:57 -04:00
Leo Famulari b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665]. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
 2018-10-28 18:22:46 -04:00
Mathieu Othacehe 81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support. 
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module.  It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
 2018-10-28 20:42:50 +09:00
Efraim Flashner 852a5692bb
gnu: qt@4: Use invoke. 
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
 2018-10-28 09:52:46 +02:00
Efraim Flashner 1f71daf499
gnu: qt@4: Update build config. 
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
 2018-10-28 09:52:38 +02:00
Efraim Flashner 3ea61f9642
gnu: qt: Use invoke. 
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
 2018-10-28 09:52:16 +02:00
Efraim Flashner 124351efad
gnu: qt: Add vulkan support. 
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
 2018-10-28 09:51:56 +02:00
Efraim Flashner d28af1991a
gnu: qt: Use system sqlite. 
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
 2018-10-28 09:51:25 +02:00
Efraim Flashner 7930cfc989
gnu: qt: Update to 5.11.2. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
 2018-10-28 09:51:05 +02:00
Tobias Geerinckx-Rice 2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9. 
And trim lines to 80 characters.

* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 2792d8a865
gnu: fzy: Update to 1.0. 
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 31b619566d
gnu: fzy: Don't use unstable tarball. 
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice 6135735b52
gnu: perl-www-mechanize: Update to 1.89. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
 2018-10-28 02:34:06 +01:00