8b15b3a1e8
gnu: linux-libre: Update to 4.20.3.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.3.
(%linux-libre-hash): Update hash.
2019-01-17 16:11:35 -05:00
df9db3d1d2
gnu: linux-libre@4.19: Update to 4.19.16.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.16.
(%linux-libre-4.19-hash): Update hash.
2019-01-17 16:10:49 -05:00
cadb457a34
gnu: linux-libre@4.14: Update to 4.14.94.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.94.
(%linux-libre-4.14-hash): Update hash.
2019-01-17 16:10:07 -05:00
94c5f46217
gnu: linux-libre@4.9: Update to 4.9.151.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.151.
2019-01-17 16:09:31 -05:00
8ce7fb035f
gnu: linux-libre@4.4: Update to 4.4.171.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.171.
2019-01-17 16:07:44 -05:00
2b65a9e6d1
gnu: OpenSSH: Fix CVE-2018-20685.
...
* gnu/packages/patches/openssh-CVE-2018-20685.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (openssh)[source]: Use it.
2019-01-17 14:02:04 -05:00
3d7ad1dc9f
gnu: ghc-cryptonite: Disable tests.
...
* gnu/packages/haskell-crypto.scm (ghc-cryptonite)[arguments]: Disable tests.
2019-01-17 17:58:35 +01:00
5de93cdba7
gnu: ghc-8: Patch ghc-pkg for reproducibility.
...
Fixes <https://bugs.gnu.org/33922 >.
Co-authored-by: Timothy Sample <samplet@ngyro.com>.
* gnu/packages/haskell.scm (ghc-8)[arguments]: Add build phase
"fix-ghc-pkg-nondeterminism".
2019-01-17 17:56:50 +01:00
a8307a178b
gnu: Add guile-parted.
...
* gnu/packages/guile.scm (guile-parted): New variable.
2019-01-17 14:04:22 +01:00
7e3e6d721d
gnu: guile-newt: Update to revision 4.
...
* gnu/packages/guile.scm (guile-newt): Update to revision 4.
2019-01-17 14:04:22 +01:00
08af580bde
gnu: kmscon: Add runtime keymap update support.
...
* gnu/packages/patches/kmscon-runtime-keymap-switch.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (kmscon)[source]: Add patch.
2019-01-17 14:04:20 +01:00
15f0719e67
guile: newt: Update revision to 3.
...
* gnu/packages/guile.scm (guile-newt): Update revision to 3.
2019-01-17 14:04:20 +01:00
57cd7d92d8
gnu: Add ghc-tldr.
...
* gnu/packages/haskell.scm (ghc-tldr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-17 14:04:20 +01:00
073f5f2057
Revert "Revert "gnu: man-db: Embed absolute reference to 'preconv'.""
...
This reverts commit ccb15b343e73b2ce8795
2019-01-17 12:29:40 +01:00
3d540c48e7
gnu: Add emacs-edbi-sqlite.
...
* gnu/packages/emacs-xyz.scm (emacs-edbi-sqlite): New variable.
2019-01-17 12:20:55 +01:00
c010ec65ae
gnu: Add emacs-edbi.
...
* gnu/packages/emacs-xyz.scm (emacs-edbi): New variable.
2019-01-17 12:20:54 +01:00
8c98ce92b9
gnu: Add emacs-epc.
...
* gnu/packages/emacs-xyz.scm (emacs-epc): New variable.
2019-01-17 12:20:54 +01:00
3e1fcc5ef4
gnu: Add emacs-ctable.
...
* gnu/packages/emacs-xyz.scm (emacs-ctable): New variable.
2019-01-17 12:20:54 +01:00
5544a07fb5
gnu: Add emacs-e2wm.
...
* gnu/packages/emacs-xyz.scm (emacs-e2wm): New variable.
2019-01-17 12:20:54 +01:00
9830f1a249
gnu: Add emacs-window-layout.
...
* gnu/packages/emacs-xyz.scm (emacs-window-layout): New variable.
2019-01-17 12:20:54 +01:00
2c114220aa
gnu: Add perl-rpc-epc-service.
...
* gnu/packages/libevent.scm (perl-rpc-epc-service): New variable.
2019-01-17 12:20:54 +01:00
cbffb56cd4
gnu: Add perl-data-sexpression.
...
* gnu/packages/perl.scm (perl-data-sexpression): New variable.
2019-01-17 12:20:54 +01:00
73b2ce8795
gnu: groff-minimal: Disable relocatability.
...
* gnu/packages/groff.scm (groff-minimal)[arguments]<#:phases>
[disable-relocatability]: New phase.
2019-01-17 10:07:07 +01:00
6c4a951a6e
gnu: gauche: Remove number of packages from description.
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* gnu/packages/scheme.scm (gauche)[description]: Remove number of packages.
[arguments]: Remove useless code.
2019-01-17 08:24:30 +01:00
2615ee9520
gnu: kwindowsystem: Enable test-suite.
...
* gnu/package/kde-frameworks.scm(kwindowsystem)
[inputs]: Add openbox.
[arguments] <#:tests?> Remove.
<#:phases> 'blacklist-failing-tests: New phase.
<#:phases> 'check: Start openbox, don't set QT_PLUGIN_PATH, use invkove,
simplify and cleanup code. No longer move 'check behind install.
2019-01-17 00:19:33 +01:00
e11553f742
gnu: knewstuff: Enable test-suite.
...
Without anything changed the test-suite now passes, thus can be enabled.
* gnu/package/kde-frameworks.scm(knewstuff)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
048c557d66
gnu: kemoticons: Enable test-suite.
...
Without anything changed the test-suite now passes, thus can be enabled.
* gnu/package/kde-frameworks.scm(kemoticons)[arguments]<#:tests?>: Remove.
2019-01-17 00:19:33 +01:00
8c81e9f2db
gnu: kpackage: Enable test-suite.
...
* gnu/package/kde-frameworks.scm(kpackage)[arguments]
<#:tests?>: Remove. <#:phases>: Add phase 'patch-tests.
2019-01-17 00:19:33 +01:00
6ca3218812
gnu: kirigami: Enable test-suite.
...
The error which inhibited running the tests no longer occurs
in 5.49.0, although now no tests are found at all. Since no tests
are found now, the phase 'check-setup can be removed, too,
and thus the 'arguments' at all.
* gnu/packages/kde-frameworks.scm(kirigami)[arguments]: Remove.
2019-01-17 00:19:32 +01:00
2d4589ffb9
gnu: kcoreaddons: Enable test-suite.
...
Enable running the tests and blacklist the one failing test.
* gnu/package/kde-frameworks.scm(kcoreaddons)[arguments]
<#:tests?>: Remove. <#:phases>: Add phase 'blacklist-failing-test.
2019-01-17 00:19:32 +01:00
22fe911061
gnu: php: Update to 7.3.1.
...
* gnu/packages/php.scm (php): Update to 7.3.1.
2019-01-16 20:35:41 +01:00
4d390cad25
gnu: Add ocaml-ppxlib.
...
* gnu/packages/ocaml.scm (ocaml-ppxlib): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:44 +01:00
3f623d00a7
gnu: Add ocaml-ppx-derivers.
...
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:37 +01:00
b5bab81c10
gnu: Add ocaml-migrate-parsetree.
...
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:35 +01:00
ac06a773f5
gnu: Add ocaml-compiler-libs.
...
* gnu/packages/ocaml.scm (ocaml-compiler-libs): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:33 +01:00
22074259d2
gnu: Add ocaml-base.
...
* gnu/packages/ocaml.scm (ocaml-base): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:30 +01:00
7cca1fd400
gnu: Add ocaml-sexplib.
...
* gnu/packages/ocaml.scm (ocaml-sexplib): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:28 +01:00
7726124ae2
gnu: Add ocaml-parsexp.
...
* gnu/packages/ocaml.scm (ocaml-parsexp): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:26 +01:00
5fa01e8aaa
gnu: Add ocaml-sexplib0.
...
* gnu/packages/ocaml.scm (ocaml-sexplib0): New variable.
Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-01-16 20:08:21 +01:00
5f2122fb21
gnu: gnurl: Add properties for updater.
...
* gnu/packages/gnunet.scm (gnurl)[properties]: New field.
2019-01-16 19:48:02 +02:00
96733e9417
Revert "gnu: groff: Disable relocatability."
...
This causes more than 3600 packages to be rebuilt.
This reverts commit f57693e17c
2019-01-16 18:31:27 +02:00
4eacd52cd0
gnu: Remove unnecessary module reference.
...
* gnu/packages/glib.scm: Remove reference to python-xyz.
2019-01-16 16:08:30 +01:00
eeb883cb0d
gnu: Move Emacs packages to new module.
...
* gnu/packages/emacs.scm: Move almost all packages from here...
* gnu/packages/emacs-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/statistics.scm: Update module references.
2019-01-16 16:08:22 +01:00
255d1bbe77
gnu: Move dbm databases to new module.
...
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here...
* gnu/packages/dbm.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/audio.scm,
gnu/packages/avahi.scm,
gnu/packages/backup.scm,
gnu/packages/cobol.scm,
gnu/packages/cyrus-sasl.scm,
gnu/packages/databases.scm,
gnu/packages/finance.scm,
gnu/packages/game-development.scm,
gnu/packages/gnome.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/linux.scm,
gnu/packages/mail.scm,
gnu/packages/man.scm,
gnu/packages/nvi.scm,
gnu/packages/openldap.scm,
gnu/packages/package-management.scm,
gnu/packages/php.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/sawfish.scm: Update module references.
2019-01-16 16:08:22 +01:00
cd0322a3ef
gnu: Move sqlite to separate module.
...
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5,
sqlite-with-column-metadata): Move variables from here...
* gnu/packages/sqlite.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/apl.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/code.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/dc.scm,
gnu/packages/disk.scm,
gnu/packages/ebook.scm,
gnu/packages/education.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/file-systems.scm,
gnu/packages/freedesktop.scm,
gnu/packages/ftp.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gnome.scm,
gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/gps.scm,
gnu/packages/guile.scm,
gnu/packages/ibus.scm,
gnu/packages/kerberos.scm,
gnu/packages/kodi.scm,
gnu/packages/lisp.scm,
gnu/packages/mail.scm,
gnu/packages/messaging.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nfs.scm,
gnu/packages/ocaml.scm,
gnu/packages/package-management.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/php.scm,
gnu/packages/python.scm,
gnu/packages/qt.scm,
gnu/packages/ruby.scm,
gnu/packages/scheme.scm,
gnu/packages/sync.scm,
gnu/packages/syndication.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/web-browsers.scm,
gnu/packages/webkit.scm: Adjust module references.
2019-01-16 16:08:22 +01:00
f57693e17c
gnu: groff: Disable relocatability.
...
* gnu/packages/groff.scm (groff)[arguments]<#:phases>[disable-relocatability]:
New phase.
2019-01-16 15:15:30 +01:00
be1ce9fd31
gnu: Add prosody-smacks.
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* gnu/packages/messaging.scm (prosody-smacks): New variable.
2019-01-16 14:26:06 +01:00
a42bdd1c22
gnu: obs: Update to 22.0.3.
...
* gnu/packages/video.scm (obs): Update to 22.0.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
ab100b905f
gnu: grub: Add dependency on console-setup.
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* gnu/packages/bootloaders.scm (grub)[arguments]: In 'patch-stuff'
phase, patch 'grub-kbdcomp.in'.
[inputs]: Add CONSOLE-SETUP.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-16 14:07:38 +01:00
39ad752cf9
gnu: kodi: Skip failing test.
...
* gnu/packages/kodi.scm (kodi)[source]: Add patch.
* gnu/packages/patches/kodi-skip-test-449.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-16 11:59:35 +02:00
be0be3dee0
gnu: Add meld.
...
* gnu/packages/patchutils.scm (meld): New variable.
2019-01-16 10:44:23 +01:00
41a54622b6
gnu: Add console-setup.
...
* gnu/packages/xorg.scm (console-setup): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 23:16:20 +01:00
fe77ede70a
gnu: Add bdfresize.
...
* gnu/packages/xorg.scm (bdfresize): New variable.
2019-01-15 23:16:20 +01:00
8fb8afd98c
gnu: hyperrogue: Update to 10.5d.
...
* gnu/packages/games.scm (hyperrogue): Update to 10.5d.
2019-01-15 14:48:59 -05:00
b03131902e
gnu: emacs-closql: Fix hash.
...
* gnu/packages/emacs.scm (emacs-closql)[source]: Fix incorrect hash.
2019-01-15 20:28:37 +01:00
eac7ed195b
gnu: Add gauche.
...
* gnu/packages/scheme.scm (gauche): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-15 20:24:08 +01:00
4fec042b54
gnu: Move Python compression packages to new module.
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* gnu/packages/compression.scm (python-lzo, python2-lzo, python-lz4,
python2-lz4, python-lzstring, python2-lzstring, bitshuffle,
bitshuffle-for-snappy): Move variables from here...
* gnu/packages/python-compression.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/bioinformatics.scm,
gnu/packages/java-compression.scm,
gnu/packages/xorg.scm: Adjust module references.
2019-01-15 17:45:33 +01:00
22e623aef0
gnu: Add python-grpcio.
...
* gnu/packages/python-xyz.scm (python-grpcio): New variable.
2019-01-15 17:27:34 +01:00
2884aac071
gnu: Add python-gast.
...
* gnu/packages/python-xyz.scm (python-gast): New variable.
2019-01-15 17:27:34 +01:00
79869f8064
gnu: Add python-astunparse.
...
* gnu/packages/python-xyz.scm (python-astunparse): New variable.
2019-01-15 17:27:34 +01:00
81bed4e92b
gnu: Add python-astor.
...
* gnu/packages/python-xyz.scm (python-astor): New variable.
2019-01-15 17:27:34 +01:00
d0446c4b55
gnu: Add python-absl-py.
...
* gnu/packages/python-xyz.scm (python-absl-py): New variable.
2019-01-15 17:27:34 +01:00
c22c803efc
gnu: Add protobuf-next.
...
* gnu/packages/protobuf.scm (protobuf-next): New variable.
2019-01-15 17:27:34 +01:00
e2931e9979
gnu: Add c-ares-next.
...
* gnu/packages/adns.scm (c-ares-next): New variable.
2019-01-15 17:27:34 +01:00
9210a6c082
gnu: yosys: Update to 0.8.
...
* gnu/packages/fpga.scm (yosys): Update to 0.8.
2019-01-15 16:46:45 +01:00
eccd3f6d2e
gnu: arachne-pnr: Fix tests.
...
* gnu/packages/fpga.scm (arachne-pnr)[arguments]: Add #:make-flags.
<#:phases>[configure]: Remove Makefile substitution.
2019-01-15 16:46:45 +01:00
72dd271cee
gnu: icestorm: Update to 0.0-2-c0cbae88a.
...
* gnu/packages/fpga.scm (icestorm): Update to 0.0-2-c0cbae88a.
2019-01-15 16:46:45 +01:00
e82baf69f1
gnu: arachne-pnr: Update to 840bdfdeb.
...
* gnu/packages/fpga.scm (arachne-pnr): Update to 840bdfdeb.
2019-01-15 16:46:43 +01:00
357b9f9d71
gnu: Rename sshfs-fuse to sshfs.
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* gnu/packages/linux.scm (sshfs): New variable.
(sshfs-fuse): Mark as superseded.
Signed-off-by: Leo Famulari <leo@famulari.name>
2019-01-15 10:45:45 -05:00
5327e912a8
gnu: Add missing module reference.
...
This is a follow-up to commit 44d10b1f72
2019-01-15 14:58:13 +01:00
44d10b1f72
gnu: Separate Python core packages from the rest.
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* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 14:46:44 +01:00
f370509096
gnu: docker-cli: Don't install the same executable twice.
...
Reported by Meiyo Peng <meiyo.peng@gmail.com>.
* gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>[install]:
Don't install the same executable twice.
2019-01-15 13:32:09 +01:00
c4153008f7
gnu: python-numpy-documentation: Add missing packages to texlive-union.
...
* gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add
texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
2019-01-15 13:05:22 +01:00
24d0c4d0eb
gnu: texlive-fonts-amsfonts: Install type1 fonts.
...
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[native-inputs]: Fetch type1
font files.
[arguments]: Install them.
2019-01-15 13:05:22 +01:00
1574932deb
gnu: texlive-bin: Do not truncate output lines.
...
* gnu/packages/tex.scm (texlive-bin)[arguments]: Change default line limits in
build phase.
2019-01-15 13:05:22 +01:00
769bb5e56b
gnu: Add texlive-luatex-luaotfload.
...
* gnu/packages/tex.scm (texlive-luatex-luaotfload): New variable.
2019-01-15 13:05:22 +01:00
c2a1fe4ad2
gnu: Add texlive-fonts-lm.
...
* gnu/packages/tex.scm (texlive-fonts-lm): New variable.
2019-01-15 13:05:22 +01:00
4e9242aaeb
gnu: Add texlive-fonts-cm-super.
...
* gnu/packages/tex.scm (texlive-fonts-cm-super): New variable.
2019-01-15 13:05:22 +01:00
d7da23721a
gnu: texlive-union: Implement in terms of texlive-base.
...
* gnu/packages/tex.scm (texlive-union): Inherit from texlive-base.
2019-01-15 13:05:22 +01:00
bfcb9d4dbf
gnu: Add texlive-base.
...
* gnu/packages/tex.scm (texlive-base): New variable.
2019-01-15 13:05:22 +01:00
a1b4d62cda
gnu: texlive-bin: Add native search paths.
...
* gnu/packages/tex.scm (texlive-bin)[native-search-paths]: Add specifications
for TEXMF and TEXMFCNF.
2019-01-15 13:05:22 +01:00
476f7fceb7
gnu: texlive-union: Wrap programs weakly.
...
* gnu/packages/tex.scm (texlive-union)[arguments]: Wrap programs with TEXMFCNF
and TEXMF so that environment variables take precedence.
2019-01-15 13:05:22 +01:00
9c45beb4cc
gnu: texlive-latex-fontspec: Install default fontspec.cfg.
...
* gnu/packages/tex.scm (texlive-latex-fontspec)[arguments]: Add build phase to
install fontspec.cfg.
2019-01-15 13:05:22 +01:00
ebe0271aa0
gnu: opencv: Update configure flags.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Change the
configure-flags on a per-architecture basis.
2019-01-15 13:20:14 +02:00
74a8b2cca1
gnu: guile-commonmark: Install .scm files in the right place.
...
Previously they'd be installed in PREFIX/share/share/guile/site.
* gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New
fields.
2019-01-15 12:05:21 +01:00
6aa4f09eb6
gnu: font-dosis: Switch to font-build-system.
...
* gnu/packages/fonts.scm (font-dosis): Switch to font-build-system.
[source]: Use url-fetch/zipbomb.
[native-inputs]: Remove unzip.
2019-01-15 15:27:54 +05:30
67c05f587a
gnu: python-git-review: Update to 1.27.0.
...
* gnu/packages/openstack.scm (python-git-review): Update to 1.27.0.
[arguments]: Get the 'wrap-program' phase to return #t.
2019-01-15 10:49:18 +01:00
104e1d55c7
gnu: prosody: Update to 0.11.2.
...
* gnu/packages/messaging.scm (prosody): Update to 0.11.2.
2019-01-15 10:49:18 +01:00
38f18309e1
gnu: youtube-dl: Update to 2019.01.10.
...
* gnu/packages/video.scm (youtube-dl): Update to 2019.01.10.
[source]: Update uri.
2019-01-15 09:42:17 +02:00
e98c354d1a
gnu: guile-ssh: Use 'git-fetch'.
...
* gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
2019-01-14 23:43:49 +01:00
a8b0556ea1
gnu: libssh: Update to 0.8.6.
...
* gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/ssh.scm (libssh): Update to 0.8.6.
[source](patches): Remove.
[arguments]: Add #:phases.
(guile-ssh)[source](modules, snippet]: New fields.
2019-01-14 23:43:49 +01:00
152d4076a4
gnu: guile-json: Add 3.1.0.
...
* gnu/packages/guile.scm (guile-json-3): New variable.
2019-01-14 23:43:49 +01:00
21b41a79fe
gnu: Move Perl compression packages to new module.
...
* gnu/packages/compression.scm (perl-compress-raw-bzip2,
perl-compress-raw-zlib, perl-io-compress, perl-archive-zip,
perl-archive-extract): Move from here...
* gnu/packages/perl-compression.scm: ...to this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm:
Adjust references.
2019-01-14 18:12:54 +01:00
b80ecc5a63
gnu: texlive-latex-fontspec: Propagate l3packages.
...
* gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove
texlive-latex-l3kernel.
[propagated-inputs]: Add texlive-latex-l3packages.
2019-01-14 15:42:32 +01:00
2fea7041a3
gnu: texlive-latex-l3packages: Propagate l3kernel.
...
* gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move
texlive-latex-l3kernel from here...
[propagated-inputs]: ...to here.
2019-01-14 15:39:22 +01:00
73635e3f69
gnu: Add texlive-latex-changepage.
...
* gnu/packages/tex.scm (texlive-latex-changepage): New variable.
2019-01-14 14:13:21 +01:00
6309d21579
gnu: Add texlive-generic-babel-german.
...
* gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
2019-01-14 14:13:21 +01:00
d68c8017f1
gnu: texlive-latex-base: Install configuration files.
...
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all
configuration files.
[native-inputs]: Move texlive-generic-hyph-utf8 from here...
[propagated-inputs]: ...to here.
2019-01-14 14:13:21 +01:00
6c56e9c493
gnu: opencv: Use 'git-fetch'.
...
* gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'.
[native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib.
Remove unzip.
[arguments]: Update custom 'unpack-submodule-sources accordingly. Update
paths in configure-flags, 'diable-broken-tests phase.
2019-01-14 15:07:42 +02:00
7b28210531
gnu: python-django-filter: Use 'invoke'.
...
* gnu/packages/django.scm (python-django-filter)[arguments]: Use
'invoke'.
2019-01-14 15:07:42 +02:00
8e21fa0bd3
gnu: opencv: Loosen test suite failures.
...
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch
to opencv-contrib.
[arguments]: Update 'unpack-submodule-sources phase.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2019-01-14 15:07:42 +02:00
fdeb2def6a
gnu: opencv: Update configure flags.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Don't use
precompiled headers. Enable all available CPU optimizations.
2019-01-14 15:07:42 +02:00
b5baf9529e
gnu: opencv: Don't hardcode build directories.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Change
OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd'
instead of hardcoding the build path.
2019-01-14 15:07:41 +02:00
6949f45c10
gnu: opencv: Fix building on non-x86_64 systems.
...
* gnu/packages/image-processing.scm (opencv)[arguments]: Add
configure-flag to disable carotene. Don't require x86_64 CPU
except on x86_64. Fix typo.
2019-01-14 15:07:41 +02:00
c5c42f0a9c
gnu: gnurl: Update to 7.63.0.
...
* gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
2019-01-14 13:57:49 +02:00
6e46be066a
gnu: emacs-pass: Update to 1.8.
...
* gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
2019-01-14 12:33:46 +01:00
478040d4fb
gnu: dosbox: Update to 0.74-2.
...
* gnu/packages/emulators.scm (dosbox): Update to 0.74-2.
[arguments]: Use invoke in 'autogen.sh phase.
2019-01-14 09:08:04 +01:00
72b308364f
gnu: linux-libre: Update to 4.20.2.
...
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2.
(%linux-libre-hash): Update hash.
2019-01-14 01:29:47 -05:00
8fa75a2266
gnu: linux-libre@4.19: Update to 4.19.15.
...
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15.
(%linux-libre-4.19-hash): Update hash.
2019-01-14 01:28:02 -05:00
8b2aabd9d9
gnu: linux-libre@4.14: Update to 4.14.93.
...
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93.
(%linux-libre-4.14-hash): Update hash.
2019-01-14 01:26:21 -05:00
e724e1543a
gnu: linux-libre@4.9: Update to 4.9.150.
...
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
2019-01-14 01:25:28 -05:00
0dd2a4f324
gnu: linux-libre@4.4: Update to 4.4.170.
...
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
2019-01-14 01:24:40 -05:00
64d25f0be2
gnu: Add ocaml-merlin.
...
* gnu/packages/ocaml.scm (ocaml-merlin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
cc353cc067
gnu: Add emacs-tldr.
...
* gnu/packages/emacs.scm (emacs-tldr): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-01-13 23:30:15 +01:00
24a23bea20
gnu: Add python-miniboa.
...
python2-miniboa is required for the linkchecker testsuite.
* gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
2019-01-13 20:47:40 +00:00
c4aa1ebc81
gnu: python-pillow: Update to 5.4.1.
...
I'm looking at this, as this release fixes an issue with the Django testsuite:
https://github.com/python-pillow/Pillow/pull/3525
* gnu/packages/python.scm (python-pillow): Update to 5.4.1.
2019-01-13 17:09:52 +00:00
14bba460ab
gnu: r-biocgenerics: Move to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here...
* gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
2019-01-13 13:04:18 +01:00
7097c7009d
gnu: r-annotate: Move to bioconductor.
...
* gnu/packages/bioinformatics.scm (r-annotate): Move from here...
* gnu/packages/bioconductor.scm (r-annotate): ...to here.
2019-01-13 13:04:18 +01:00
c80fb90f4a
gnu: r-vegan: Move from bioinformatics to cran.
...
* gnu/packages/bioinformatics.scm (r-vegan): Move from here...
* gnu/packages/cran.scm (r-vegan): ...to here.
2019-01-13 13:04:18 +01:00
d691e96657
gnu: conda: Use 'invoke'.
...
* gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
2019-01-13 12:44:03 +02:00
675e7bba3e
gnu: python-conda: All phases return #t.
...
* gnu/packages/package-management.scm (python-conda)[arguments]: Use
'invoke'.
2019-01-13 12:44:03 +02:00
e227f248a6
gnu: python-conda: Fix test suite.
...
* gnu/packages/package-management.scm (python-conda)[native-inputs]: Add
python-cytoolz.
2019-01-13 12:44:00 +02:00
82acd43cbd
gnu: Add r-raster.
...
* gnu/packages/cran.scm (r-raster): New variable.
2019-01-13 11:14:44 +01:00
104e7c3c92
gnu: r-ggformula: Update to 0.9.1.
...
* gnu/packages/cran.scm (r-ggformula): Update to 0.9.1.
2019-01-13 11:14:43 +01:00
3fe45dda0a
gnu: r-tibble: Update to 2.0.1.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.0.1.
2019-01-13 11:14:43 +01:00
523762e332
gnu: r-psych: Update to 1.8.12.
...
* gnu/packages/cran.scm (r-psych): Update to 1.8.12.
2019-01-13 11:14:43 +01:00
d5fa25a5a0
gnu: bitshuffle: Fix build on armhf-linux.
...
* gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase
to only use NEON on aarch64.
2019-01-13 11:31:04 +02:00
15d2cebf45
gnu: wine-staging: Update to 4.0-rc6.
...
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc6.
* gnu/packages/wine.scm (wine-staging): Update to 4.0-rc6.
2019-01-13 10:14:49 +01:00
c8d8925647
gnu: Sort package module references in (gnu packages graphviz).
...
* gnu/packages/graphviz.scm: Sort package module references; delete
duplicates.
2019-01-13 10:07:06 +01:00
8b1c0dab45
gnu: Add python-pygraphviz.
...
* gnu/packages/graphviz.scm (python-pygraphviz): New variable.
2019-01-13 10:07:06 +01:00
9e7f55de45
gnu: Add python-doctest-ignore-unicode.
...
* gnu/packages/python.scm (python-doctest-ignore-unicode): New variable.
2019-01-13 10:07:06 +01:00
c016e390bf
gnu: Add graphviz-2.38.
...
* gnu/packages/graphviz.scm (graphviz-2.38): New variable.
2019-01-13 10:07:06 +01:00
1710ffa4c7
gnu: sudo: Update to 1.8.27.
...
* gnu/packages/admin.scm (sudo): Update to 1.8.27.
2019-01-13 01:25:18 +01:00
cb3e055f86
gnu: libassuan: Update to 2.5.2.
...
* gnu/packages/gnupg.scm (libassuan): Update to 2.5.2.
2019-01-13 01:25:17 +01:00
66470a5ad0
gnu: libgxps: Update to 0.3.1.
...
* gnu/packages/gnome.scm (libgxps): Update to 0.3.1.
2019-01-13 01:25:17 +01:00
ad55c19211
gnu: libqmi: Update to 1.22.0.
...
* gnu/packages/freedesktop.scm (libqmi): Update to 1.22.0.
2019-01-13 01:25:17 +01:00
de261ace27
gnu: libmbim: Update to 1.18.0.
...
* gnu/packages/freedesktop.scm (libmbim): Update to 1.18.0.
2019-01-13 01:25:17 +01:00
8bcae1e60c
gnu: libsodium: Update to 1.0.17.
...
* gnu/packages/crypto.scm (libsodium): Update to 1.0.17.
2019-01-13 01:25:17 +01:00
0b014776c9
gnu: exempi: Update to 2.5.0.
...
* gnu/packages/freedesktop.scm (exempi): Update to 2.5.0.
2019-01-13 01:25:17 +01:00
00262db23a
gnu: seabios: Update to 1.12.0.
...
* gnu/packages/firmware.scm (seabios): Update to 1.12.0.
2019-01-13 01:25:17 +01:00
b2e765de4c
gnu: httpd: Update to 2.4.37.
...
* gnu/packages/web.scm (httpd): Update to 2.4.37.
2019-01-13 01:25:17 +01:00
1d7fbe0947
gnu: nasm: Update license.
...
* gnu/packages/assembly.scm (nasm)[license]: Change to BSD-2.
2019-01-13 01:25:16 +01:00
80459f5a21
gnu: nasm: Update home page.
...
* gnu/packages/assembly.scm (nasm)[home-page]: Use HTTPS.
2019-01-13 01:25:16 +01:00
9f1448b74a
gnu: libgphoto2: Update to 2.5.22.
...
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.22.
2019-01-13 01:25:16 +01:00
ef61969c52
gnu: re2: Update to 2019-01-01.
...
* gnu/packages/regex.scm (re2): Update to 2019-01-01.
2019-01-13 01:25:16 +01:00
c06ef010e3
gnu: libsecret: Update to 0.18.7.
...
* gnu/packages/gnome.scm (libsecret): Update to 0.18.7.
[native-inputs]: Remove INTLTOOL. Add GETTEXT-MINIMAL.
2019-01-13 01:25:16 +01:00
48d5818a0e
gnu: fluidsynth: Update to 2.0.3.
...
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.3.
2019-01-13 01:25:16 +01:00
bf135622bd
gnu: rofi: Update to 1.5.2.
...
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.2.
2019-01-13 01:25:16 +01:00
2bb187c484
gnu: xscreensaver: Update to 5.42.
...
* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.42.
[arguments]: Add "CFLAGS=-std=c99" to #:make-flags.
2019-01-13 01:25:16 +01:00
0c4cee13b2
gnu: libcmis: Update to 0.5.2.
...
* gnu/packages/libreoffice.scm (libcmis): Update to 0.5.2.
[source](uri): Use XZ-compressed tarball.
[arguments]: Remove #:phases. Don't pass "--disable-werror" in #:configure-flags.
2019-01-13 01:25:15 +01:00
48a51af9d2
gnu: http-parser: Update to 2.9.0.
...
* gnu/packages/web.scm (http-parser): Update to 2.9.0.
2019-01-13 01:25:15 +01:00
304db09257
gnu: http-parser: Download from git.
...
* gnu/packages/web.scm (http-parser)[source]: Change to GIT-FETCH.
2019-01-13 01:25:15 +01:00
9c2094785d
gnu: libetonyek: Adjust inputs.
...
* gnu/packages/libreoffice.scm (libetonyek)[native-inputs]: Remove LIBLANGTAG.
Move GLM and MDDS to ...
[inputs]: ... here.
[propagated-inputs]: Add LIBLANGTAG and ZLIB.
2019-01-13 01:25:15 +01:00
7c3acfcb69
gnu: libetonyek: Update to 0.1.9.
...
* gnu/packages/libreoffice.scm (libetonyek): Update to 0.1.9.
[arguments]: Remove #:phases.
2019-01-13 01:25:15 +01:00
b1d2e0b4e0
gnu: libcdr: Update to 0.1.5.
...
* gnu/packages/libreoffice.scm (libcdr): Update to 0.1.5.
[source](uri): Download over HTTPS.
[arguments]: Remove.
2019-01-13 01:25:15 +01:00
5b9c2690af
gnu: tintin++: Update to 2.01.5.
...
* gnu/packages/games.scm (tintin++): Update to 2.01.5.
2019-01-12 18:37:38 -05:00
c6e9b494e8
gnu: r-ruvseq: Update to 1.16.1.
...
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.1.
2019-01-12 23:35:19 +01:00
c86fc96987
gnu: r-inspect: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.1.
[propagated-inputs]: Add r-deseq2, r-plgem, r-shiny, r-summarizedexperiment,
and r-txdb-mmusculus-ucsc-mm9-knowngene.
2019-01-12 23:35:19 +01:00
d220babf34
gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.
...
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
2019-01-12 23:35:19 +01:00
cad6fb2dec
gnu: Add r-plgem.
...
* gnu/packages/bioconductor.scm (r-plgem): New variable.
2019-01-12 23:35:19 +01:00
45dcd7dcfd
gnu: r-rots: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
0b469ee225
gnu: r-glimma: Update to 1.10.1.
...
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.1.
2019-01-12 23:35:19 +01:00
7f2b1c4af0
gnu: r-goseq: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
add2b19561
gnu: r-chippeakanno: Update to 3.16.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.1.
2019-01-12 23:35:18 +01:00
c476edc2cd
gnu: r-rtracklayer: Update to 1.42.1.
...
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.42.1.
2019-01-12 23:35:18 +01:00
1e107b0960
gnu: r-scater: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
0f268bb275
gnu: r-singlecellexperiment: Update to 1.4.1.
...
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.4.1.
2019-01-12 23:35:18 +01:00
a0224bd4f6
gnu: r-rhdf5lib: Update to 1.4.2.
...
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.4.2.
2019-01-12 23:35:18 +01:00
40561d0249
gnu: r-hdf5array: Update to 1.10.1.
...
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.10.1.
2019-01-12 23:35:18 +01:00
ad10b3979d
gnu: r-qvalue: Update to 2.14.1.
...
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.14.1.
2019-01-12 23:35:18 +01:00
19cacb5a2d
gnu: r-gviz: Update to 1.26.4.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.26.4.
2019-01-12 23:35:18 +01:00
c80595935d
gnu: r-biovizbase: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.30.1.
2019-01-12 23:35:18 +01:00
27194effd7
gnu: r-ensembldb: Update to 2.6.3.
...
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.6.3.
2019-01-12 23:35:18 +01:00
43931ff72f
gnu: r-dirichletmultinomial: Update to 1.24.1.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.24.1.
2019-01-12 23:35:18 +01:00
15d89fe9f8
gnu: r-gage: Update to 2.32.1.
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* gnu/packages/bioinformatics.scm (r-gage): Update to 2.32.1.
2019-01-12 23:35:18 +01:00
4615cf9f1a
gnu: r-annotationhub: Update to 2.14.2.
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* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.14.2.
2019-01-12 23:35:18 +01:00
ab4a862ab8
gnu: r-edaseq: Update to 2.16.3.
...
* gnu/packages/bioinformatics.scm (r-edaseq): Update to 2.16.3.
[propagated-inputs]: Add r-biocmanager.
2019-01-12 23:35:18 +01:00
3bdc41b352
gnu: r-deseq: Update to 1.34.1.
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* gnu/packages/bioinformatics.scm (r-deseq): Update to 1.34.1.
2019-01-12 23:35:18 +01:00
9abf344f8b
gnu: r-msnid: Update to 1.16.1.
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* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.16.1.
2019-01-12 23:35:17 +01:00
880ed11e9f
gnu: r-msnbase: Update to 2.8.3.
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* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.8.3.
2019-01-12 23:35:17 +01:00
6451af78e1
gnu: r-mzid: Update to 1.20.1.
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* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.20.1.
2019-01-12 23:35:17 +01:00
a4f038dc97
gnu: r-mzr: Update to 2.16.1.
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* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.16.1.
2019-01-12 23:35:17 +01:00
46508c3a92
gnu: r-sva: Update to 3.30.1.
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* gnu/packages/bioinformatics.scm (r-sva): Update to 3.30.1.
2019-01-12 23:35:17 +01:00
c20426ec5c
gnu: r-methylkit: Update to 1.8.1.
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* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.8.1.
2019-01-12 23:35:17 +01:00
5c72ebafeb
gnu: r-copywriter: Update to 2.14.1.
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* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.14.1.
2019-01-12 23:35:17 +01:00
86162c767e
gnu: r-rhdf5: Update to 2.26.2.
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* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.26.2.
2019-01-12 23:35:17 +01:00
4c7b9222dd
gnu: r-tximport: Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.10.1.
2019-01-12 23:35:17 +01:00
4bfde52178
gnu: r-genomicalignments: Update to 1.18.1.
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* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.18.1.
2019-01-12 23:35:17 +01:00
1fa12b2f06
gnu: r-biostrings: Update to 2.50.2.
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* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.50.2.
2019-01-12 23:35:17 +01:00
d4fc834cf7
gnu: r-biocparallel: Update to 1.16.5.
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* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.16.5.
2019-01-12 23:35:17 +01:00
52c977a05b
gnu: r-limma: Update to 3.38.3.
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* gnu/packages/bioinformatics.scm (r-limma): Update to 3.38.3.
2019-01-12 23:35:17 +01:00
3fd48846eb
gnu: r-variantannotation: Update to 1.28.8.
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* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.8.
2019-01-12 23:35:17 +01:00
a619850930
gnu: r-edger: Update to 3.24.3.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.24.3.
2019-01-12 23:35:17 +01:00
00f105fe20
gnu: r-biocviews: Update to 1.50.10.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.50.10.
2019-01-12 23:35:16 +01:00
9c1b2b2ae0
gnu: r-systempiper: Update to 1.16.1.
...
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.16.1.
2019-01-12 23:35:16 +01:00
3b8c884285
gnu: r-rbgl: Update to 1.58.1.
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* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.58.1.
2019-01-12 23:35:16 +01:00
ffe16ef33c
gnu: r-dexseq: Update to 1.28.1.
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* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.28.1.
2019-01-12 23:35:16 +01:00
f7e95c50b8
gnu: r-deseq2: Update to 1.22.2.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.22.2.
2019-01-12 23:35:16 +01:00
feb561f721
gnu: r-scran: Update to 1.10.2.
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* gnu/packages/bioinformatics.scm (r-scran): Update to 1.10.2.
2019-01-12 23:35:16 +01:00
fd7301676e
gnu: r-sjplot: Update to 2.6.2.
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* gnu/packages/cran.scm (r-sjplot): Update to 2.6.2.
2019-01-12 23:35:16 +01:00
Mark H Weaver