e586c6faf3
gnu: petsc-complex-mpi: Setup MPI for tests.
...
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup
phase.
2019-05-31 19:41:41 -05:00
5c48519204
gnu: Add mousepad.
...
* gnu/packages/xfce.scm (mousepad): New variable.
2019-05-31 18:54:20 -04:00
7293e3dba1
gnu: Add zbar.
...
* gnu/packages/aidc.scm (zbar): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 23:21:02 +02:00
2177d9222f
services: Add patchwork.
...
* gnu/service/web.scm (<patchwork-database-configuration>
<patchwork-settings-module>, <patchwork-configuration>): New record types.
(patchwork-virtualhost): New procedure.
(patchwork-service-type): New variable.
* gnu/tests/web.scm (%test-patchwork): New variable.
* doc/guix.text (Web Services): Document it.
2019-05-31 20:22:23 +01:00
4764c6cc46
gnu: Add patchwork.
...
* gnu/packages/patchutils.scm (patchwork): New variable.
2019-05-31 20:22:23 +01:00
f6b0e1f8ff
services: Add getmail.
...
Getmail is a mail retriever written in Python, this commit adds a service-type
to run getmail. I'm looking at this, as it's a convinient way of getting
mailing list messages in to Patchwork.
I initially tried putting this in the (gnu services mail) module, but due to
also trying to use the define-configuration pattern, it conflicted with the
dovecot service.
* gnu/services/getmail.scm: New file.
* gnu/local.mk: Add it.
* gnu/tests/mail.scm (%getmail-os, %test-getmail): New variables.
(run-getmail-test): New procedure.
2019-05-31 20:22:20 +01:00
9bc1de3134
gnu: Go 1.4: Fix typo.
...
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
2019-05-31 10:30:21 -04:00
db6dd04c3d
gnu: gtksourceview-2: Fix finding default data.
...
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
2019-05-31 14:41:38 +02:00
27489e7f73
gnu: php: Update to 7.3.6.
...
* gnu/packages/php.scm (php): Update to 7.3.6.
2019-05-31 14:41:32 +02:00
1a24f855c8
gnu: Add r-birta.
...
* gnu/packages/bioconductor.scm (r-birta): New variable.
2019-05-31 14:40:29 +02:00
81e3de01ae
gnu: Add r-birewire.
...
* gnu/packages/bioconductor.scm (r-birewire): New variable.
2019-05-31 14:40:20 +02:00
95bf71c307
gnu: r-seriation: Update to 1.2-5.
...
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
2019-05-31 14:29:32 +02:00
2e62ba46e2
gnu: emacs-diff-hl: Update to 1.8.6.
...
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6.
[source]: Fetch from git.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:21:06 +02:00
66712cc0ed
gnu: emacs-helm: Update to 3.2.
...
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:20:20 +02:00
f42399b5e5
gnu: emacs-counsel-tramp: Update to 0.6.3.
...
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:19:53 +02:00
ea82e3b266
gnu: emacs-editorconfig: Update to 0.8.0.
...
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:19:18 +02:00
265ee14650
gnu: emacs-exec-path-from-shell: Update to 1.12.
...
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12.
[source]: Use git-fetch.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:18:29 +02:00
8ae48674ce
gnu: Add emacs-reformatter.
...
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 10:15:52 +02:00
b0eaead510
gnu: Add emacs-ivy-pass.
...
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31 09:56:17 +02:00
e637744547
gnu: kitty: Update to 0.14.1.
...
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
2019-05-31 08:33:19 +02:00
ff793da669
gnu: diffoscope: Update to version 115-1.7f3416f.
...
* gnu/packages/package-management (diffoscope):
[package] Update to version 115-1.7f3416f.
[source] Switch to using git-fetch.
[inputs] Move python-pytest and python-chardet ...
[native-inputs] ... to here.
[arguments] Move comment to fit line length.
2019-05-30 16:04:30 -07:00
add5ecfd68
gnu: r-biocviews: Update to 1.52.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
2019-05-30 13:41:10 +02:00
782a7f4655
gnu: r-tibble: Update to 2.1.2.
...
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
2019-05-30 13:41:04 +02:00
d1ee1540d4
gnu: r-dose: Update to 3.10.1.
...
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30 13:40:48 +02:00
169d63f533
gnu: Add gthumb.
...
* gnu/packages/gnome.scm (gthumb): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-30 11:50:05 +02:00
dc37301330
gnu: sddm: Add QtQuick-related dependencies to sddm.
...
* gnu/packages/display-managers.scm (sddm): add QtQuick related
dependencies to sddm package in order to `sddm-greeter` application
to load user defined themes which are based on QtQuick.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29 23:16:49 +02:00
73bddab545
publish: Factorize 'compress-nar'.
...
* guix/scripts/publish.scm (compress-nar): New procedure.
(bake-narinfo+nar): Use it.
2019-05-29 23:16:49 +02:00
e84e036943
publish: Remove outdated comment.
...
* guix/scripts/publish.scm (make-request-handler): Remove outdated TODO.
2019-05-29 23:16:49 +02:00
4c8603e808
gnu: r-statmod: Update to 1.4.32.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29 22:38:05 +02:00
765d327c85
gnu: r-fields: Update to 9.8-3.
...
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29 22:38:05 +02:00
a1ac29f80d
gnu: r-bayestestr: Update to 0.2.0.
...
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29 22:38:05 +02:00
a15cee50ce
gnu: Use make-linux-libre-headers.
...
* gnu/packages/linux.scm (make-linux-libre-headers): New variable.
(linux-libre): Rename to...
(linux-libre-5.1): ...this.
(linux-libre-headers): Rename to...
(linux-libre-headers-4.14.67): ...this.
(linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers.
(linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19,
%linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15,
linux-libre-headers-4.15, linux-libre-headers-4.14): New variables.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 18:19:16 +02:00
2ea77d48a7
gnu: cross-base: Allow non-default linux-headers.
...
* gnu/packages/cross-base.scm (cross-kernel-headers): Add
LINUX-HEADERS optional argument.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:44:54 +02:00
7180dd6716
gnu: Add basic support for riscv64-linux-gnu targets.
...
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add
"riscv64-linux".
* gnu/packages/linux.scm (system->linux-architecture): Add "riscv"
prefix.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29 15:40:31 +02:00
4f963be052
gnu: Add childsplay.
...
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29 13:09:53 +02:00
694cb8dc62
installer: Fix wifi menu crash with hidden SSIDs.
...
This fixes https://issues.guix.gnu.org/issue/35622 .
* gnu/installer/connman.scm (<service>): Mention that name may be false.
* gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services
without name.
Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
2019-05-29 11:44:49 +02:00
4b92dac20f
gnu: awscli: Add missing input.
...
Fixes <https://bugs.gnu.org/35980 >.
* gnu/packages/python-web.scm (awscli)[arguments]: Add build phase
"fix-reference-to-groff".
[inputs]: Add groff.
2019-05-29 10:56:28 +02:00
d37ba98409
gnu: r-scran: Update to 1.12.1.
...
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29 00:02:42 +02:00
55cd48508e
gnu: r-scater: Update to 1.12.2.
...
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29 00:02:37 +02:00
102cf9a1ca
gnu: r-sva: Update to 3.32.1.
...
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29 00:02:31 +02:00
24f46e6e9e
gnu: r-genomicfeatures: Update to 1.36.1.
...
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29 00:02:25 +02:00
4eea449aaa
gnu: r-edger: Update to 3.26.4.
...
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29 00:02:17 +02:00
4929a30f69
gnu: r-variantannotation: Update to 1.30.1.
...
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-29 00:02:10 +02:00
531940d388
import: cran: Ignore invalid packages from the system requirements.
...
* guix/import/cran.scm (description->package): Filter invalid packages from
the list of system requirements.
2019-05-28 23:56:59 +02:00
e4519ee73d
gnu: r-atacseqqc: Update to 1.8.1.
...
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28 23:56:36 +02:00
13b49976b7
gnu: r-icobra: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28 23:56:31 +02:00
85d0bd5340
gnu: r-chippeakanno: Update to 3.18.1.
...
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28 23:56:27 +02:00
f43ec9e96a
gnu: r-geosphere: Update to 1.5-10.
...
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28 23:56:15 +02:00
0fe52daa59
gnu: r-ggfortify: Update to 0.4.7.
...
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28 23:56:08 +02:00
7a8577717f
gnu: r-wgcna: Update to 1.68.
...
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28 23:56:04 +02:00
Eric Bavier