Commit Graph

17559 Commits

Author SHA1 Message Date
Leo Famulari 60f3ad8c07
gnu: gnu-make: Don't replace 'sh' reference with 'bash'.
* gnu/packages/base.scm (gnu-make)[arguments]: Use /bin/sh instead of /bin/bash
in 'set-default-shell' phase.
2017-01-06 17:16:02 -05:00
Leo Famulari fa6428a19f
gnu: m4: Don't replace 'sh' reference with 'bash'.
* gnu/packages/m4.scm (m4)[arguments]: Use /bin/sh instead of /bin/bash in
'pre-check' phase.
2017-01-06 17:16:02 -05:00
Leo Famulari 74288230ea
Merge branch 'master' into core-updates 2017-01-06 17:14:41 -05:00
Leo Famulari aa21c764d6
gnu: python-pycrypto: Fix CVE-2013-7459.
* gnu/packages/patches/python-pycrypto-CVE-2013-7459.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pycrypto, python2-pycrypto)[source]: Use the
patch. Use pypi-uri.
2017-01-06 13:50:18 -05:00
Leo Famulari 707c65aad7
gnu: nspr: Update to 4.13.1.
* gnu/packages/gnuzilla.scm (nspr): Update to 4.13.1.
2017-01-06 13:09:05 -05:00
Ricardo Wurmus 03476a23ff
guix: Add Docker image export.
* guix/docker.scm: New file.
* Makefile.am (MODULES): Register it.
* guix/scripts/archive.scm (show-help, %options, guix-archive): Add
support for "--format".
* doc/guix.texi (Invoking guix archive): Document it.
2017-01-06 16:44:00 +01:00
Ricardo Wurmus 3a3bf2f819
gnu: Add r-copywriter.
* gnu/packages/bioinformatics.scm (r-copywriter): New variable.
2017-01-06 16:31:19 +01:00
Ricardo Wurmus d407bdb931
gnu: Add r-copyhelper.
* gnu/packages/bioinformatics.scm (r-copyhelper): New variable.
2017-01-06 16:31:14 +01:00
Ricardo Wurmus 6193563a36
gnu: Add r-chipseq.
* gnu/packages/bioinformatics.scm (r-chipseq): New variable.
2017-01-06 16:31:02 +01:00
David Craven 974e02da76
file-systems: Refactor file system detection logic.
* gnu/build/file-systems.scm (read-superblock,
  null-terminated-latin1->string): New variables.
  (sub-bytevector): Move to general section.
  (ext2-superblock?, read-ext2-superblock): New variables.
  (ext2-superblock-uuid, ext2-superblock-volume-name): Use
  sub-bytevector and null-terminated-latin1->string.
  (%ext2-sblock-magic, %ext2-sblock-creator-os, %ext2-sblock-uuid,
  %ext2-sblock-volume-name): Inline constants.
  (luks-superblock?, read-luks-header): New variables.
  (%luks-header-size, %luks-magic): Inline.
  (partition-label-predicate, partition-uuid-predicate,
  luks-partition-uuid-predicate): Use new functions.
2017-01-06 15:06:42 +01:00
Christopher Baines fab2784dbb
gnu: gnome-tweak-tool: Add missing inputs.
* gnu/packages/gnome.scm (gnome-tweak-tool)[inputs]: Add gnome-desktop
and libsoup.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines adb41527ad
gnu: gnome-tweak-tool: Make propagated-inputs just inputs.
* gnu/packages/gnome.scm (gnome-tweak-tool)[propagated-inputs]: Merge
with...
[inputs]: ... this.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines 9af6bce1e1
gnu: gnome-tweak-tool: Wrap program to set 'GI_TYPELIB_PATH'.
* gnu/packages/gnome.scm (gnome-tweak-tool)[arguments]: Add
'wrap-program' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Christopher Baines 7ef335b0e8
gnu: gnome-tweak-tool: Use glib-or-gtk-build-system.
This allows gobject introspection namespaces to be found.

* gnu/packages/gnome.scm (gnome-tweak-tool)[build-system]: Set to
GLIB-OR-GTK-BUILD-SYSTEM.
[arguments]: Use %GLIB-OR-GTK-BUILD-SYSTEM-MODULES in #:imported-modules.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-06 10:23:27 +01:00
Ben J Woodcroft dbf9d37114
gnu: bioruby: Update to 1.5.1.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.1.
2017-01-06 19:06:07 +10:00
Ben J Woodcroft 0c37e2a3d2
gnu: cd-hit: Update to 4.6.6.
* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.6.6.
2017-01-06 19:06:03 +10:00
Leo Famulari e50d5b8c9d
gnu: khal: Disable failing tests.
* gnu/packages/patches/khal-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/calendar.scm (khal): Use it.
2017-01-06 03:19:40 -05:00
Leo Famulari e0c32fc817
gnu: vdirsyncer: Update to 0.14.1.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.14.1.
2017-01-06 03:19:40 -05:00
Leo Famulari 491b78a8e8
gnu: python-icalendar: Update to 3.11.1.
* gnu/packages/python.scm (python-icalendar): Update to 3.11.1.
2017-01-06 03:19:36 -05:00
Ludovic Courtès 76c31074c8
derivations: Share a cache between 'derivation' and 'read-derivation'.
This leads a 13% speedup on 'guix build libreoffice -d' and 18% on
'guix build gnome -d'.

* guix/derivations.scm (%derivation-cache): New variable.
(read-derivation): Use it instead of the private 'cache' variable.
(derivation): Populate %DERIVATION-CACHE before returning.
2017-01-05 23:45:39 +01:00
Ludovic Courtès fbec5abeef
gnu: gv: Do not propagate Ghostscript.
* gnu/packages/gv.scm (gv)[propagated-inputs]: Remove.
[arguments]: New field.
[inputs]: Add GHOSTCRIPT/X.
2017-01-05 23:45:38 +01:00
Ludovic Courtès 6d943e553d
derivations: Micro-optimize 'write-derivation'.
* guix/derivations.scm (write-derivation)[write-input]: Use 'display'
instead of 'write' for PATH.
Use 'simple-format' instead of 'format', and '~a' instead of '~s' for
SYSTEM and BUILDER.
2017-01-05 23:45:38 +01:00
Alex Kost ec14d2157d
gnu: emacs-smartparens: Update to 1.9.0.
* gnu/packages/emacs.scm (emacs-smartparens): Update to 1.9.0.
2017-01-06 00:31:03 +03:00
Alex Kost 922ab34446
gnu: magit: Update to 2.10.0.
* gnu/packages/emacs.scm (magit, emacs-magit-popup): Update to 2.10.0.
2017-01-06 00:29:23 +03:00
Alex Kost cfb9026aa5
gnu: emacs-with-editor: Update to 2.5.9.
* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.5.9.
2017-01-06 00:29:23 +03:00
Danny Milosavljevic 6c8a387af2
gnu: Add ghc-markdown-unlit.
* gnu/packages/haskell.scm (ghc-markdown-unlit): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 18:47:40 +01:00
Tobias Geerinckx-Rice 12c15242f4
gnu: beep: Ignore substitute* return value.
* gnu/packages/terminals.scm (beep)[arguments]: End 'patch-makefile phase
with truth.
2017-01-05 17:40:54 +01:00
Leo Famulari 92e779592d
gnu: libtool: Correct replacement shebang.
* gnu/packages/autotools.scm (libtool)[arguments]: Correct replacement
shebang in 'restore-ltmain-shebang' phase.
2017-01-05 11:32:44 -05:00
David Thompson 543bd0eede
gnu: sdl2: Add fcitx input.
* gnu/packages/sdl.scm (sdl2)[inputs]: Add fcitx.
2017-01-05 11:27:10 -05:00
David Thompson e0101b54b7
gnu: sdl2: Fix double input events bug.
* gnu/packages/sdl.scm (sdl2)[inputs]: Add dbus, gblib, and ibus.
2017-01-05 11:22:32 -05:00
Leo Famulari f537ad0bf3
Revert "gnu: gawk: Don't replace 'sh' reference with 'bash'."
This commit causes too many rebuilds. It will be re-committed to core-updates.

This reverts commit 5b2834ae79.
2017-01-05 11:22:07 -05:00
Leo Famulari 5b2834ae79
gnu: gawk: Don't replace 'sh' reference with 'bash'.
* gnu/packages/gawk.scm (gawk)[arguments]: Use /bin/sh instead of /bin/bash in
'set-shell-file-name' phase.
2017-01-05 11:06:06 -05:00
Leo Famulari 78c172a56e
gnu: libtool: Make sure all phases return a successful value.
* gnu/packages/autotools.scm (libtool)[arguments]: Return #t from 'pre-check'
and 'restore-ltmain-shebang' phases.
2017-01-05 10:46:34 -05:00
Marius Bakke d9d23101ce
gnu: irssi: Update to 1.0.0.
* gnu/packages/irc.scm (irssi): Update to 1.0.0.
[arguments]: Remove --with-ncurses configure flag.
[native-inputs]: Move 'perl' to ...
[inputs]: ... here.
[home-page]: Use HTTPS.
2017-01-05 16:44:34 +01:00
Leo Famulari c5862bda95
gnu: libtool: Don't replace 'sh' reference with 'bash'.
Bash behaves differently based on how it is invoked (see Invocation in bash(1)).

* gnu/packages/autotools.scm (libtool)[arguments]: Use /bin/sh instead
of /bin/bash in 'pre-check' phase. Fix typo in comment.
2017-01-05 10:43:17 -05:00
ng0 98341757c8
gnu: libtool: Restore ltmain.sh shebang.
This fixes <http://bugs.gnu.org/25304>

* gnu/packages/autotools.scm (libtool)[arguments]: Add new phase
'restore-ltmain-shebang'.
[native-inputs]: Add help2man.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-05 10:43:17 -05:00
ng0 dc70626d26
gnu: libtool: Use 'modify-phases'.
* gnu/packages/autotools.scm (libtool): Use 'modify-phases'.
[arguments]: Use 'modify-phases'.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-01-05 10:43:14 -05:00
Marius Bakke 1bd858cc14
gnu: Fix indentation of some python packages.
This is a followup to abe2ec73..807a5b32.

* gnu/packages/python.scm (python-snowballstemmer,
  python-sphinx-cloud-sptheme, python-sphinx-alabaster-theme): Fix indentation.
2017-01-05 16:28:01 +01:00
Danny Milosavljevic 807a5b32bf
gnu: Add python-sphinx-alabaster-theme.
* gnu/packages/python.scm (python-sphinx-alabaster-theme,
  python2-sphinx-alabaster-theme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic 754bfd7019
gnu: Add python-sphinx-cloud-sptheme.
* gnu/packages/python.scm (python-sphinx-cloud-sptheme,
  python2-sphinx-cloud-sptheme): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:27 +01:00
Danny Milosavljevic 89cd988b6c
gnu: Add python-snowballstemmer.
* gnu/packages/python.scm (python-snowballstemmer,
  python2-snowballstemmer): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-01-05 16:17:26 +01:00
Marius Bakke 7d7ea947f5
gnu: sed: Update to 4.3.
* gnu/packages/base.scm (sed): Update to 4.3.
[source]: Use xz tarball. Remove upstreamed patch.
[arguments]: Fix '/bin/sh' -> 'bash' substitution.
[home-page]: Use https.
[native-inputs]: Add perl.
* gnu/packages/patches/sed-hurd-path-max.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-01-05 15:21:23 +01:00
José Miguel Sánchez García abe2ec735f
gnu: Add beep.
* gnu/packages/terminals.scm (beep): New variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2017-01-05 13:09:19 +01:00
Tobias Geerinckx-Rice 88a46c9812
gnu: Remove unused module import from (gnu packages mtools).
This is a follow-up to commit 3b0f2ba46b.

* gnu/packages/mtools.scm: Remove import of (gnu packages python).
2017-01-05 13:09:19 +01:00
Ben Woodcroft 19e5fb6030
gnu: ruby-nokogiri: Update to 1.7.0.1.
* gnu/packages/ruby.scm (ruby-nokogiri): Update to 1.7.0.1.
2017-01-05 21:00:51 +10:00
Ben Woodcroft 8e941f2068
gnu: ruby-hoe: Update to 3.16.0.
* gnu/packages/ruby.scm (ruby-hoe): Update to 3.16.0.
2017-01-05 20:52:22 +10:00
Ludovic Courtès 9410a5aa91
hydra: Add "powerpc-linux-gnu" as a cross-compilation target.
* build-aux/hydra/gnu-system.scm (%cross-targets): Add
"powerpc-linux-gnu".
2017-01-05 00:00:59 +01:00
Carlos Sánchez de La Lama 4a6f099e2c
gnu: bootstrap: Add the dynamic linker name for "powerpc-linux".
This commit completes cross-compilation support for powerpc-linux-gnu.

* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "powerpc-linux"
case.
2017-01-04 23:57:30 +01:00
Carlos Sánchez de La Lama 440a3143f0
gnu: linux-libre: Adjust for PowerPC.
* gnu/packages/linux.scm (system->defconfig): New procedure.
(linux-libre-headers)[arguments]: Use it in 'build' phase to determine
the target name.
* gnu/packages/cross-base.scm (cross-kernel-headers)[xlinux-headers]
(arguments): Likewise.
2017-01-04 23:57:05 +01:00
Carlos Sánchez de La Lama fc649d0aad
gnu: gcc: Adjust for PowerPC.
* gnu/packages/gcc.scm (gcc-4.7)[arguments]: Add powerpc specific
substitutions for dynamic linker and start files locations in
'pre-configure' phase.
* gnu/packages/make-bootstrap.scm (%gcc-static)[arguments]: Add
"gcc/config/rs6000/sysv4.h" to the list of files in 'remove-lgcc_s'
phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-01-04 23:55:36 +01:00