f76fc96866
Merge branch 'master' into core-updates
2017-12-21 13:58:35 -05:00
aead9e1bc5
gnu: r-testthat: Update to 2.0.0.
...
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0.
[propagated-inputs]: Add r-cli, r-rlang, and r-withr.
2017-12-19 20:35:08 +01:00
f9f1291bc0
gnu: r-ade4: Update to 1.7-10.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10.
[propagated-inputs]: Add r-mass.
2017-12-19 20:35:07 +01:00
83b0e1d53f
gnu: r-registry: Update to 0.5.
...
* gnu/packages/statistics.scm (r-registry): Update to 0.5.
2017-12-19 20:35:07 +01:00
d2dc69b8be
gnu: r-iterators: Update to 1.0.9.
...
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
2017-12-19 20:35:07 +01:00
4a1945da16
gnu: r-segmented: Update to 0.5-3.0.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
2017-12-19 20:35:06 +01:00
0a1b447e2b
gnu: r-rprojroot: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
2017-12-19 20:35:06 +01:00
102a271870
gnu: r-rcpparmadillo: Update to 0.8.300.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
2017-12-19 20:35:06 +01:00
0300cacae1
gnu: r-plotrix: Update to 3.7.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
2017-12-19 20:35:06 +01:00
004e108aad
gnu: r-git2r: Update to 0.20.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
2017-12-19 20:35:06 +01:00
069e3b5c09
gnu: r-backports: Update to 1.1.2.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
2017-12-19 20:35:05 +01:00
1028f9ef11
gnu: r-yaml: Update to 2.1.16.
...
* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
2017-12-19 20:35:05 +01:00
de3fd9253f
gnu: r-reshape2: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
2017-12-19 20:35:05 +01:00
d0c1a402db
gnu: r-digest: Update to 0.6.13.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
2017-12-19 20:35:05 +01:00
28fc96cb1e
gnu: Update r-cowplot to 0.9.2.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2.
2017-12-19 10:47:19 +01:00
32cd878be0
Merge branch 'master' into core-updates
2017-12-19 01:42:40 +01:00
6bc862c100
gnu: r-foreach: Update to 1.4.4.
...
* gnu/packages/statistics.scm (r-foreach): Update to 1.4.4
2017-12-15 16:44:26 +01:00
a135b3ddfe
gnu: r-caret: Update to 6.0-78.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-78
2017-12-14 00:18:16 +01:00
5ac4bd9c0a
gnu: r-domc: Update to 1.3.5.
...
* gnu/packages/statistics.scm (r-domc): Update to 1.3.5
2017-12-14 00:18:15 +01:00
9cf5f134d5
gnu: Switch to using the version-major procedure.
...
* gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major.
(hmmer)[source]: Switch to using version-major.
(pidgin)[native-search-paths]: Switch to using version-major.
(r-minimal)[source]: Switch to using version-major.
2017-12-11 19:12:33 +00:00
77181815ae
Merge branch 'master' into core-updates
2017-12-05 23:41:30 +01:00
f1b90a2b58
gnu: r-bigmemory: Update to 4.5.31.
...
* gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31.
[propagated-inputs]: Remove r-r-utils.
2017-11-30 17:28:27 +01:00
b50a4b1391
gnu: r-cowplot: Update to 0.9.1.
...
* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1.
[propagated-inputs]: Add r-scales.
2017-11-30 17:28:27 +01:00
a3ae2fa537
gnu: r-rcppprogress: Update to 0.4.
...
* gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4.
[propagated-inputs]: Add r-devtools.
2017-11-30 17:28:26 +01:00
0382d37734
gnu: r-rmarkdown: Update to 1.8.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8.
[propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
2017-11-30 17:28:26 +01:00
e35cac9581
gnu: r-batchjobs: Update to 1.7.
...
* gnu/packages/statistics.scm (r-batchjobs): Update to 1.7.
[propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove
r-fail and r-stringr.
2017-11-30 17:28:25 +01:00
87313f64d9
gnu: r-stringi: Update to 1.1.6.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
2017-11-30 17:28:16 +01:00
3e11bddcc7
gnu: r-devtools: Update to 1.13.4.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
2017-11-30 17:28:15 +01:00
20b0f8a5ec
gnu: r-mclust: Update to 5.4.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.4.
2017-11-30 17:28:15 +01:00
6d4aed8d98
gnu: r-rcppeigen: Update to 0.3.3.3.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30 17:28:14 +01:00
a0a3184925
gnu: r-car: Update to 2.1-6.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30 17:28:14 +01:00
c8fb593502
gnu: r-sn: Update to 1.5-1.
...
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30 17:28:13 +01:00
b796f9e6be
gnu: r-openssl: Update to 0.9.9.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30 17:28:13 +01:00
09c0107f75
gnu: r-hms: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0.
[propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30 17:28:12 +01:00
8937abefb2
gnu: Update r-matrix to 1.2-12.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
2017-11-30 12:52:25 +01:00
c71558ffed
gnu: Update r-cluster to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-11-30 12:51:54 +01:00
cbe1314a7e
gnu: Update r-minimal to 3.4.3.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
2017-11-30 12:50:23 +01:00
2dd12924cf
Merge branch 'master' into core-updates
2017-11-19 15:01:00 +01:00
33dc54b08c
gnu: Move date/time packages from python.scm to time.scm.
...
* gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil,
python2-dateutil, python-parsedatetime, python2-parsedatetime,
python-tzlocal, python-isodate, python2-isodate, python-iso8601,
python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339,
python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601,
python2-aniso8601): Move from here...
* gnu/packages/time.scm: ...to here.
* gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/django.scm,
gnu/packages/ebook.scm,
gnu/packages/gnome.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/mail.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/tls.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm: Adjust accordingly.
2017-11-18 12:45:19 +01:00
9ef9c6489f
gnu: Remove duplicates from (gnu packages statistics).
...
* gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove
duplicates.
2017-11-18 11:18:39 +01:00
ac257f127a
gnu: Move testing packages from python.scm to check.scm.
...
* gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api,
python-mock, python2-mock, python-mock-2, python-nose, python2-nose,
python-nose2, python2-nose2, python-unittest2, python2-unittest2,
python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0,
python-pytest-cov, python2-pytest-cov, python-pytest-runner,
python2-pytest-runner, python-pytest-mock, python2-pytest-mock,
python-pytest-xdist, python2-pytest-xdist, python-scripttest,
python2-scripttest, python-testtools, python2-testtools, python-testscenarios,
python2-testscenarios, python-testresources, python2-testresources,
python-subunit, python2-subunit, python-fixtures, python2-fixtures,
python-testrepository, python2-testrepository, python-coverage,
python2-coverage, python-cov-core, python2-cov-core, python-testpath,
python2-testpath, python-testlib, python2-testlib, python-pytest-cache,
python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess,
python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis,
python2-hypothesis, python-lit, python2-lit, python-pytest-pep8,
python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes,
python2-coverage-test-runner, python-pylint, python2-pylint,
python-paramunittest, python2-python-paramunittest, python-pytest-warnings,
python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog,
python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover,
python2-nosexcover, python-discover, python2-discover, behave, python-rednose,
python2-rednose, python-nose-randomly, python2-nose-randomly,
python-nose-timer, python2-nose-timer): Move from here...
* gnu/packages/check.scm: ...to here.
* gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/backup.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/calendar.scm,
gnu/packages/dav.scm,
gnu/packages/django.scm,
gnu/packages/freedesktop.scm,
gnu/packages/haskell.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/ldc.scm,
gnu/packages/libffi.scm,
gnu/packages/mail.scm,
gnu/packages/mpd.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/rdf.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm: Adjust accordingly.
2017-11-17 22:36:26 +01:00
e99f045cc8
gnu: Add r-directlabels.
...
* gnu/packages/statistics.scm (r-directlabels): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-11-09 23:54:48 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
...
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
60ec9da3aa
gnu: r-tidyselect: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
2017-11-07 08:15:44 +01:00
65a8cd6676
gnu: r-lubridate: Update to 1.7.1.
...
* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1.
[propagated-inputs]: Add r-rcpp.
2017-11-07 08:15:41 +01:00
689edf1153
gnu: r-preprocesscore: Update to 1.40.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
2017-11-07 08:15:41 +01:00
e7f680f071
gnu: r-r-utils: Update to 2.6.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
2017-11-07 08:15:41 +01:00
ecfe98a17a
gnu: r-openssl: Update to 0.9.8.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
2017-11-07 08:15:40 +01:00
aced057fbc
gnu: r-rlang: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
2017-11-07 08:15:40 +01:00
f9c3bd2e01
gnu: Generalize the variable name of the test-only tzdata package.
...
* gnu/packages/base.scm (tzdata-2017a): Rename variable to tzdata-for-tests.
* gnu/packages/calcurse.scm (calcurse)[native-inputs, arguments]: Adjust
accordingly.
gnu/packages/glib.scm (glib): Likewise.
* gnu/packages/perl.scm (perl-libtime-parsedate): Adjust accordingly and
add tzdata-for-tests #:disallowed-references.
* gnu/packages/statistics.scm (r-minimal): Adjust accordingly.
2017-11-04 10:32:30 -04:00
a6ec5b7043
gnu: r-withr: Update to 2.1.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.1.0.
[propagated-inputs]: Add r-lattice.
2017-11-03 14:14:37 +01:00
fd9afcf4ea
gnu: r-quantreg: Update to 5.34.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
2017-11-03 14:14:37 +01:00
1fe75660c0
gnu: r-robustbase: Update to 0.92-8.
...
* gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
2017-11-03 14:14:37 +01:00
1fb415cb50
gnu: r-purrr: Update to 0.2.4.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
2017-11-03 14:14:37 +01:00
c8818f5577
gnu: r-irlba: Update to 2.3.1.
...
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
2017-11-03 14:14:37 +01:00
116e9837b5
gnu: r-checkmate: Update to 1.8.5.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
2017-11-03 14:14:36 +01:00
fde66e3018
gnu: r-multitaper: Update to 1.0-14.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
2017-11-03 14:14:36 +01:00
0a123e0609
gnu: r-data-table: Update to 1.10.4-3.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
2017-11-03 14:14:36 +01:00
b5a2f37157
gnu: r-pryr: Update to 0.1.3
...
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
2017-11-03 14:14:36 +01:00
bc409c8d3b
gnu: r-lazyeval: Update to 0.2.1.
...
* gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
2017-11-03 14:14:36 +01:00
1f6f4c40c1
gnu: Add r-tgconfig.
...
* gnu/packages/statistics.scm (r-tgconfig): New variable.
2017-10-30 12:07:53 +01:00
7941d1ed5d
gnu: Add r-tgstat.
...
* gnu/packages/statistics.scm (r-tgstat): New variable.
2017-10-30 12:07:51 +01:00
8ba3f751b6
gnu: r-nloptr: Update package hash.
...
The source was repacked and reuploaded without incrementing the version
number. The difference was windows line endings on the windows files.
* gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
2017-10-26 10:46:02 +03:00
4c77abc4da
gnu: Add r-forcats.
...
* gnu/packages/statistics.scm (r-forcats): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2017-10-25 16:24:03 +02:00
5713bbf157
Use HTTPS for bioconductor.org.
...
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for
bioconductor.org URLs.
* gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter)
(r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category)
(r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews)
(r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata)
(r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi)
(r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray)
(r-summarizedexperiment, r-genomicalignments, r-rtracklayer)
(r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern)
(r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport)
(r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid)
(r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise.
* gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)
(r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db)
(r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db)
(r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9)
(r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene)
(r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10)
(r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]:
Likewise.
* gnu/packages/statistics.scm (r-rcurl)[source]: Likewise.
* guix/build-system/r.scm (bioconductor-uri): Likewise.
* guix/import/cran.scm (%cran-url, bioconductor-package?)
(bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
2017-10-21 17:43:40 +02:00
e059bdc9a7
gnu: r-tidyr: Update to 0.7.2.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
2017-10-17 20:58:24 +02:00
d8455fe146
gnu: r-tidyselect: Update to 0.2.2.
...
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
2017-10-17 20:58:24 +02:00
c43db8da3a
gnu: r-rcpparmadillo: Update to 0.8.100.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0.
[native-inputs]: Add r-knitr.
2017-10-17 20:58:24 +02:00
711e6cc5f4
gnu: r-data-table: Update to 1.10.4-2.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
2017-10-17 20:58:23 +02:00
767ad2f7ad
gnu: r-chron: Update to 2.3-51.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
2017-10-17 20:58:23 +02:00
dc6cb56dec
gnu: r-dplyr: Update to 0.7.4.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
2017-10-17 20:58:23 +02:00
6de897ac5a
gnu: Add r-ggdendro.
...
* gnu/packages/statistics.scm (r-ggdendro): New variable.
2017-10-11 10:02:08 +02:00
6048986c89
gnu: r-lme4: Update to 1.1-14.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-14.
2017-09-28 22:00:44 +02:00
26cd4194ef
gnu: r-doparallel: Update to 1.0.11.
...
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.11.
2017-09-28 22:00:44 +02:00
7147d8f7ad
gnu: r-checkmate: Update to 1.8.4.
...
* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.4.
2017-09-28 22:00:44 +02:00
2c49184e2c
gnu: r-backports: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.1.1.
2017-09-28 22:00:43 +02:00
1344deb937
gnu: r-minimal: Update to 3.4.2.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.2.
2017-09-28 20:21:18 +02:00
91316f31d4
gnu: r-glmnet: Update to 2.0-13.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-13.
2017-09-24 11:36:17 +02:00
d9400ee46a
gnu: r-segmented: Update to 0.5-2.2.
...
* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.2.
2017-09-24 11:36:17 +02:00
29457c43bf
gnu: r-mgcv: Update to 1.8-22.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-22.
2017-09-24 11:36:17 +02:00
2c67f96b1b
gnu: r-glmnet: Update to 2.0-12.
...
* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-12.
2017-09-18 14:23:03 +02:00
0b2fc9836b
gnu: r-lambda-r: Update to 1.2.
...
* gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.
2017-09-18 14:23:03 +02:00
9f14fffea6
gnu: r-gridextra: Update to 2.3.
...
* gnu/packages/statistics.scm (r-gridextra): Update to 2.3.
2017-09-18 14:23:02 +02:00
37c6a738f3
gnu: r-dplyr: Update to 0.7.3.
...
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.3.
2017-09-18 14:23:02 +02:00
b0c8cba485
gnu: r-crayon: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-crayon): Update to 1.3.4.
2017-09-18 14:23:02 +02:00
ea008095c3
gnu: r-svglite: Update to 1.2.1.
...
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.1.
2017-09-18 14:23:02 +02:00
7904531e5b
gnu: r-mgcv: Update to 1.8-21.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-21.
2017-09-18 14:23:02 +02:00
d9c65e5a9c
gnu: r-caret: Update to 6.0-77.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-77.
[propagated-inputs]: Remove r-car; add r-recipes and r-withr.
2017-09-18 11:33:26 +02:00
9272144a88
gnu: r-rstudioapi: Update to 0.7.
...
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.7.
2017-09-18 11:33:26 +02:00
0dc3b4d41e
gnu: r-openssl: Update to 0.9.7.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.7.
[inputs]: Replace openssl with libressl.
2017-09-18 11:33:25 +02:00
8036caa75a
gnu: r-tidyr: Update to 0.7.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.1.
2017-09-05 16:59:46 +02:00
31b7f0c0fc
gnu: r-gdtools: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.6.
2017-09-05 16:59:45 +02:00
ebbb6301a3
gnu: r-minimal: Update to 3.4.1.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
2017-09-01 22:05:39 +02:00
89b620e7ee
gnu: r-tidyr: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0.
[propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and
r-tidyselect.
2017-09-01 15:11:58 +02:00
c4a4ef39ed
gnu: Add r-tidyselect.
...
* gnu/packages/statistics.scm (r-tidyselect): New variable.
2017-09-01 15:11:58 +02:00
9077f6d9aa
gnu: r-tclust: Update to 1.3-1.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
2017-09-01 15:11:53 +02:00
347cab66b6
gnu: r-fastcluster: Update to 1.1.24.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
2017-09-01 15:11:52 +02:00
d574d6bcc2
gnu: r-rcpparmadillo: Update to 0.7.960.1.2.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
2017-09-01 15:11:52 +02:00
2dda8fca6f
gnu: r-plotrix: Update to 3.6-6.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
2017-09-01 15:11:51 +02:00
7d60652ebe
gnu: r-httr: Update to 1.3.1.
...
* gnu/packages/statistics.scm (r-httr): Update to 1.3.1.
[propagated-inputs]: Remove r-digest and r-stringr.
2017-09-01 15:11:51 +02:00
e3323e0707
gnu: r-commonmark: Update to 1.4.
...
* gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
2017-09-01 15:11:51 +02:00
5d84369bda
gnu: r-ade4: Update to 1.7-8.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
2017-09-01 15:11:50 +02:00
fb10c923b3
gnu: r-tibble: Update to 1.3.4.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
2017-09-01 15:11:50 +02:00
edd5fd7208
gnu: r-rlang: Update to 0.1.2.
...
* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
2017-09-01 15:11:49 +02:00
5a00ef0950
gnu: r-knitr: Update to 1.17.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.17.
2017-09-01 15:11:49 +02:00
3949aef601
gnu: r-bh: Update to 1.65.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
2017-09-01 15:11:49 +02:00
b93881b9c5
gnu: r-scales: Update to 0.5.0.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.5.0.
[propagated-inputs]: Add r-r6 and r-viridislite.
2017-09-01 15:11:48 +02:00
2d99a31607
gnu: r-mgcv: Update to 1.8-19.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
2017-09-01 15:11:48 +02:00
fefe9f4753
gnu: r-matrix: Update to 1.2-11.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
2017-09-01 15:11:48 +02:00
caa4e796e4
gnu: Add r-dbplyr.
...
* gnu/packages/statistics.scm (r-dbplyr): New variable.
2017-08-31 18:24:51 +02:00
174fbd5f3b
gnu: r-minimal: Remove timestamp from man page.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Adjust
"build-reproducibly" phase to prevent the bundled help2man script from
printing the current month and year.
2017-08-28 15:51:05 +02:00
af9bb4cab8
gnu: pspp: Update to 1.0.1.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.1.
2017-08-28 14:44:41 +03:00
bd3a184613
gnu: r-minimal: Do not compress serialized files.
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.
Fixes <https://bugs.gnu.org/28157 >.
2017-08-22 16:24:24 +02:00
6be54a8751
gnu: Add rmath-standalone.
...
* gnu/packages/statistics.scm (rmath-standalone): New variable.
2017-08-22 16:24:24 +02:00
bda6c35093
gnu: pspp: Update to 1.0.0.
...
* gnu/packages/statistics.scm (pspp): Update to 1.0.0.
2017-08-20 21:44:47 +03:00
a8cd352304
gnu: r-minimal: Work around failure to embed reference to "which".
...
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which".
[native-inputs]: Move "which" from here...
[propagated-inputs]: ...to here.
2017-08-20 14:00:04 +02:00
97cb349dc1
gnu: r-trimcluster: Update license.
...
* gnu/packages/statistics.scm (r-trimcluster)[license]: Also specify GPLv3+.
2017-08-17 17:26:11 +02:00
adcb30642c
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-16 17:57:40 +03:00
2d430f2923
Revert "gnu: pspp: Update to 0.11.0."
...
This FTBFS on x86_64 and i686.
This reverts commit f4c808df5b
2017-08-15 10:03:40 +03:00
f4c808df5b
gnu: pspp: Update to 0.11.0.
...
This fixes CVE-2017-10791, CVE-2017-10792.
* gnu/packages/statistics.scm (pspp): Update to 0.11.0.
2017-08-13 10:16:17 +03:00
c5f744a68d
gnu: Add r-robust.
...
* gnu/packages/statistics.scm (r-robust): New variable.
2017-08-09 20:08:13 +02:00
5d0afe8849
gnu: Add r-fit-models.
...
* gnu/packages/statistics.scm (r-fit-models): New variable.
2017-08-09 20:08:13 +02:00
0bae5fd6a7
gnu: Add r-rrcov.
...
* gnu/packages/statistics.scm (r-rrcov): New variable.
2017-08-09 20:08:13 +02:00
23841b2573
gnu: Add r-pcapp.
...
* gnu/packages/statistics.scm (r-pcapp): New variable.
2017-08-09 20:08:13 +02:00
0ecd065839
gnu: r-gdtools: Update to 0.1.5.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5.
2017-08-09 20:08:12 +02:00
c3317cd9fb
gnu: r-ggbeeswarm: Update to 0.6.0.
...
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0.
2017-08-09 20:08:12 +02:00
1738138cb3
gnu: r-igraph: Move to (gnu packages graph).
...
* gnu/packages/statistics.scm (r-igraph): Move from here...
* gnu/packages/graph.scm (r-igraph): ...to here.
2017-08-09 14:47:47 +02:00
2267e4d3f6
gnu: r-purrr: Update to 0.2.3.
...
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3.
[propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03 17:53:55 +02:00
ceb802a31c
gnu: r-desc: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03 17:53:55 +02:00
85cd755417
gnu: r-tclust: Update to 1.2-7.
...
* gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
2017-08-03 17:53:53 +02:00
6bb4bfa4bc
gnu: r-car: Update to 2.1-5.
...
* gnu/packages/statistics.scm (r-car): Update to 2.1-5.
2017-08-03 17:53:53 +02:00
0f008abe7a
gnu: r-rcppeigen: Update to 0.3.3.3.0.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
2017-08-03 17:53:53 +02:00
12c3bbb662
gnu: r-pbapply: Update to 1.3-3.
...
* gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
2017-08-03 17:53:52 +02:00
4431dd3a4e
gnu: r-vgam: Update to 1.0-4.
...
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
2017-08-03 17:53:52 +02:00
41692b2963
gnu: r-mclust: Update to 5.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.3.
2017-08-03 17:53:52 +02:00
60869fb2f8
gnu: r-flexmix: Update to 2.3-14.
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* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
2017-08-03 17:53:52 +02:00
62d3afc3d6
gnu: r-fastica: Update to 1.2-1.
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* gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
2017-08-03 17:53:52 +02:00
df03b6f90c
gnu: r-cowplot: Update to 0.8.0.
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* gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
2017-08-03 17:53:51 +02:00
d58faa7f44
gnu: r-rann: Update to 2.5.1.
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* gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
2017-08-03 17:53:51 +02:00
a8c2706de2
gnu: r-statmod: Update to 1.4.30.
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* gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
2017-08-03 17:53:51 +02:00
80d1185076
gnu: r-gdata: Update to 2.18.0.
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* gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
2017-08-03 17:53:51 +02:00
2c75199c56
gnu: r-sfsmisc: Update to 1.1-1.
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* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-1.
2017-08-03 17:53:51 +02:00
1d256438c8
gnu: r-googlesheets: Update to 0.2.2.
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* gnu/packages/statistics.scm (r-googlesheets): Update to 0.2.2.
2017-08-03 17:53:50 +02:00
9b9fef0eaf
gnu: r-tidyr: Update to 0.6.3.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.3.
2017-08-03 17:53:50 +02:00
e1cd25bc78
gnu: r-glmnet: Update to 2.0-10.
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* gnu/packages/statistics.scm (r-glmnet): Update to 2.0-10.
2017-08-03 17:53:50 +02:00
1c576cbadb
gnu: r-irlba: Update to 2.2.1.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.2.1.
2017-08-03 17:53:50 +02:00
81c057ced9
gnu: r-sparsem: Update to 1.77.
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* gnu/packages/statistics.scm (r-sparsem): Update to 1.77.
2017-08-03 17:53:50 +02:00
127b926bc1
gnu: r-segmented: Update to 0.5-2.1.
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* gnu/packages/statistics.scm (r-segmented): Update to 0.5-2.1.
2017-08-03 17:53:49 +02:00
fe9917284f
gnu: r-xml: Update to 3.98-1.9.
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* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.9.
2017-08-03 17:53:49 +02:00
cc8ba9b69c
gnu: r-rmarkdown: Update to 1.6.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.6.
2017-08-03 17:53:49 +02:00
7c172eacfa
gnu: r-rcpparmadillo: Update to 0.7.900.2.0.
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* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.900.2.0.
2017-08-03 17:53:49 +02:00
1c41d51743
gnu: r-plotrix: Update to 3.6-5.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-5.
2017-08-03 17:53:49 +02:00
76040b8561
gnu: r-readr: Update to 1.1.1.
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* gnu/packages/statistics.scm (r-readr): Update to 1.1.1.
2017-08-03 17:53:48 +02:00
d8048a1212
gnu: r-withr: Update to 2.0.0.
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* gnu/packages/statistics.scm (r-withr): Update to 2.0.0.
2017-08-03 17:53:48 +02:00
f212bf84ab
gnu: r-git2r: Update to 0.19.0.
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* gnu/packages/statistics.scm (r-git2r): Update to 0.19.0.
2017-08-03 17:53:48 +02:00
58e1ce86ab
gnu: r-checkmate: Update to 1.8.3.
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* gnu/packages/statistics.scm (r-checkmate): Update to 1.8.3.
2017-08-03 17:53:48 +02:00
63f934e672
gnu: r-backports: Update to 1.1.0.
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* gnu/packages/statistics.scm (r-backports): Update to 1.1.0.
2017-08-03 17:53:48 +02:00
c832d326a1
gnu: r-formula: Update to 1.2-2.
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* gnu/packages/statistics.scm (r-formula): Update to 1.2-2.
2017-08-03 17:53:47 +02:00
f05c6275b7
gnu: r-r6: Update to 2.2.2.
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* gnu/packages/statistics.scm (r-r6): Update to 2.2.2.
2017-08-03 17:53:47 +02:00
b07c8c0156
gnu: r-knitr: Update to 1.16.
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* gnu/packages/statistics.scm (r-knitr): Update to 1.16.
2017-08-03 17:53:47 +02:00
6dc86e8dfc
gnu: r-formatr: Update to 1.5.
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* gnu/packages/statistics.scm (r-formatr): Update to 1.5.
2017-08-03 17:53:47 +02:00
12cd797541
gnu: r-evaluate: Update to 0.10.1.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.1.
2017-08-03 17:53:47 +02:00
d5ce380711
gnu: r-dbi: Update to 0.7.
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* gnu/packages/statistics.scm (r-dbi): Update to 0.7.
2017-08-03 17:53:47 +02:00
831858a7d3
gnu: r-bit64: Update to 0.9-7.
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* gnu/packages/statistics.scm (r-bit64): Update to 0.9-7.
2017-08-03 17:53:46 +02:00
6fb21ed2a3
gnu: r-mgcv: Update to 1.8-18.
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* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-18.
2017-08-03 17:53:46 +02:00
dbeda1b4a0
gnu: r-matrix: Update to 1.2-10.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-10.
2017-08-03 17:53:46 +02:00
74b037df64
gnu: r-foreign: Update to 0.8-69.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-69.
2017-08-03 17:53:46 +02:00
af1eeabe89
gnu: r-boot: Update to 1.3-20.
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* gnu/packages/statistics.scm (r-boot): Update to 1.3-20.
2017-08-03 17:53:46 +02:00
64c6712d03
gnu: r-knitrbootstrap: Update to 1.0.1.
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* gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.1.
2017-08-03 17:53:44 +02:00
c628b8418a
gnu: r-ranger: Update to 0.8.0.
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* gnu/packages/statistics.scm (r-ranger): Update to 0.8.0.
[propagated-inputs]: Add r-matrix and r-rcppeigen.
2017-08-03 17:53:44 +02:00
cc9a778ecc
gnu: r-hmisc: Update to 4.0-3.
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* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-3.
[propagated-inputs]: Remove r-base64.
2017-08-03 17:53:43 +02:00
f9b3760636
gnu: r-plotly: Update to 4.7.1.
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* gnu/packages/statistics.scm (r-plotly): Update to 4.7.1.
[propagated-inputs]: Add r-crosstalk, r-data-table, r-htmltools, and
r-rcolorbrewer.
2017-08-03 17:53:43 +02:00
d59050823e
gnu: r-igraph: Update to 1.1.2.
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* gnu/packages/statistics.scm (r-igraph): Update to 1.1.2.
[propagated-inputs]: Remove r-nmf; add r-matrix and r-pkgconfig.
2017-08-03 17:53:43 +02:00
7b3688150b
gnu: r-purrr: Update to 0.2.2.2.
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* gnu/packages/statistics.scm (r-purrr): Update to 0.2.2.2.
[propagated-inputs]: Remove r-bh and r-dplyr; add r-tibble.
2017-08-03 17:53:43 +02:00
5fc74f24bf
gnu: r-devtools: Update to 1.13.3.
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* gnu/packages/statistics.scm (r-devtools): Update to 1.13.3.
[propagated-inputs]: Remove r-curl, r-digest, r-evaluate, r-roxygen2, and
r-rversions.
2017-08-03 17:53:43 +02:00
aad948a0ea
gnu: r-tibble: Update to 1.3.3.
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* gnu/packages/statistics.scm (r-tibble): Update to 1.3.3.
[propagated-inputs]: Remove r-lazyeval, add r-rlang.
2017-08-03 17:53:43 +02:00
a40b2c2129
gnu: r-dplyr: Update to 0.7.2.
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* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.2.
[propagated-inputs]: Remove r-lazyeval, r-dbi; add r-rlang, r-plogr, r-glue,
r-pkgconfig, r-bindrcpp.
2017-08-03 17:53:42 +02:00
a8cba9dd11
gnu: r-rcpp: Move to (gnu packages cran).
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* gnu/packages/statistics.scm (r-rcpp): Move from here...
* gnu/packages/cran.scm (r-rcpp): ...to here.
2017-08-03 17:53:42 +02:00
736332c79c
gnu: r-rcpp: Update to 0.12.12.
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* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03 17:53:42 +02:00
847b457253
gnu: r-plogr: Move to (gnu packages cran).
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* gnu/packages/statistics.scm (r-plogr): Move from here...
* gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03 17:53:41 +02:00
2f06dc0435
gnu: Add r-rlang.
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* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02 00:57:39 +02:00
8060a61798
gnu: r-rsqlite: Update to 2.0.
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* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02 00:23:16 +02:00
796237a9a4
gnu: Add r-blob.
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* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02 00:22:33 +02:00
aa184803f8
gnu: Add r-pkgconfig.
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* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-02 00:21:40 +02:00
14fce399cc
gnu: r-foreign: Update hash after upstream tarball change.
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* gnu/packages/statistics.scm (r-foreign): Update hash. The only difference
in the tarball is the metadata. The contents are identical.
2017-08-01 23:07:58 +02:00
cdf124c607
gnu: r-foreign: Remove duplicate recipe.
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* gnu/packages/statistics.scm (r-foreign): Remove duplicate recipe.
2017-08-01 23:06:02 +02:00
8f2c410fc5
gnu: r-preprocesscore: Update to 1.38.1.
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* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.1.
2017-07-27 10:04:09 +02:00
056468dc5f
gnu: Add cran module.
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* gnu/packages/cran.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/statistics.scm (r-colorspace): Move to cran.scm.
2017-07-22 23:48:57 +02:00
fcf4003950
gnu: r-spams: Update to 2.6-2017-03-22.
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* gnu/packages/statistics.scm (r-spams): Update to 2.6-2017-03-22.
[arguments]: Remove R-3.3 work-around and syntax fixes, add phase to
prevent tuning r-spams to the compiling hardware.
2017-06-29 10:02:58 +03:00
148585c240
gnu: Move contents of zip module into compression module.
...
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to...
* gnu/packages/compression.scm: ...here.
* gnu/packages/zip.scm: Delete file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file.
* po/packages/POTFILES.in: Unregister deleted file.
* gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression,
docbook, documentation, fonts, fpga, game-development, games, gl, gnome,
gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice,
markup, maths, mc, monitoring, music, php, pretty-print, python, scheme,
smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml,
zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm:
Adapt module import.
2017-06-20 18:10:35 +05:30
26bbdabdaa
gnu: r-devtools: Update to 1.13.2.
...
* gnu/packages/statistics.scm (r-devtools): Update to 1.13.2.
2017-06-17 20:53:22 +02:00
1dacc26956
gnu: Add r-fdrtool.
...
* gnu/packages/statistics.scm (r-fdrtool): New variable.
2017-06-09 03:28:40 +02:00
db0bb6f0af
gnu: Add r-lubridate.
...
* gnu/packages/statistics.scm (r-lubridate): New variable.
2017-06-09 03:27:49 +02:00
4646a79c65
gnu: r-preprocesscore: Update to 1.38.0.
...
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
2017-04-28 11:05:43 +02:00
a71d769d1e
gnu: r-minimal: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.0.
[arguments]: Set timezone to UTC+1 in "set-timezone" phase to avoid regression
test failure.
2017-04-23 22:48:19 +02:00
3b74b7a283
gnu: r-caret: Update to 6.0-76.
...
* gnu/packages/statistics.scm (r-caret): Update to 6.0-76.
[propagated-inputs]: Add r-lattice and r-nlme.
2017-04-22 23:30:38 +02:00
96071a6db2
gnu: r-lme4: Update to 1.1-13.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-13.
[propagated-inputs]: Add r-lattice and r-matrix.
2017-04-22 23:30:38 +02:00
0d5bc9382a
gnu: r-quantreg: Update to 5.33.
...
* gnu/packages/statistics.scm (r-quantreg): Update to 5.33.
[propagated-inputs]: Add r-matrix.
2017-04-22 23:30:38 +02:00
f1a313dfde
gnu: r-compquadform: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-compquadform): Update to 1.4.3.
2017-04-22 23:30:38 +02:00
50d0b2c158
gnu: r-zoo: Update to 1.8-0.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-0.
2017-04-22 23:30:37 +02:00
1c21e2cf17
gnu: r-matrixstats: Update to 0.52.2.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.2.
2017-04-22 23:30:37 +02:00
c9d200e3af
gnu: r-r-rsp: Update to 0.41.0.
...
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.41.0.
2017-04-22 23:30:37 +02:00
96338a91d5
gnu: r-rtsne: Update to 0.13.
...
* gnu/packages/statistics.scm (r-rtsne): Update to 0.13.
2017-04-22 23:30:37 +02:00
78a237f6b6
gnu: r-rcpparmadillo: Update to 0.7.800.2.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.800.2.0.
2017-04-22 23:30:37 +02:00
050d41ca87
gnu: r-memoise: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-memoise): Update to 1.1.0.
2017-04-22 23:30:36 +02:00
aa745eb61f
gnu: r-markdown: Update to 0.8.
...
* gnu/packages/statistics.scm (r-markdown): Update to 0.8.
2017-04-22 23:30:36 +02:00
958d0ee485
gnu: r-assertthat: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-assertthat): Update to 0.2.0.
2017-04-22 23:30:36 +02:00
2219e691bb
gnu: r-rpart: Update to 4.1-11.
...
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-11.
2017-04-22 23:30:36 +02:00
b3360e09a7
gnu: r-mass: Update to 7.3-47.
...
* gnu/packages/statistics.scm (r-mass): Update to 7.3-47.
2017-04-22 23:30:35 +02:00
4d76947e50
gnu: r-boot: Update to 1.3-19.
...
* gnu/packages/statistics.scm (r-boot): Update to 1.3-19.
2017-04-22 23:30:35 +02:00
1c8ee3fcc2
gnu: r-stringi: Update to 1.1.5.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.5.
2017-04-08 10:25:50 +02:00
c9dccf7917
gnu: r-sourcetools: Update to 0.1.6.
...
* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.6.
2017-04-06 14:39:23 +02:00
0685fe3c86
gnu: r-rcpparmadillo: Update to 0.7.700.0.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0.
[source]: Do not delete bundled armadillo sources, because upstream no longer
hosts previous versions.
[propagated-inputs]: Remove "armadillo-for-rcpparmadillo".
[arguments]: Remove because we no longer need to link with the armadillo
library.
* gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no
longer need to link with armadillo library.
2017-04-06 14:39:22 +02:00
20e97759bf
gnu: r-ranger: Update to 0.7.0.
...
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
2017-04-06 14:39:19 +02:00
da2260f96c
gnu: r-pbkrtest: Update to 0.4-7.
...
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
2017-04-06 14:39:19 +02:00
4328bad2cd
gnu: r-rcppeigen: Update to 0.3.2.9.1.
...
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
2017-04-06 14:39:19 +02:00
a977576780
gnu: r-mclust: Update to 5.2.3.
...
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
2017-04-06 14:39:18 +02:00
0007e645d9
gnu: r-ggthemes: Update to 3.4.0.
...
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
2017-04-06 14:39:18 +02:00
47f37fd169
gnu: r-statmod: Update to 1.4.29.
...
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
2017-04-06 14:39:18 +02:00
4c7ab0309a
gnu: r-vipor: Update to 0.4.5.
...
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
2017-04-06 14:39:18 +02:00
2f44ef97a5
gnu: r-mixtools: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0.
[propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06 14:39:17 +02:00
7a8efc81f8
gnu: r-viridis: Update to 0.4.0.
...
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0.
[propagated-inputs]: Add "r-viridislite".
2017-04-06 14:39:17 +02:00
b5d5344f32
gnu: r-viridislite: Update to 0.2.0.
...
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06 14:39:17 +02:00
cdadca5e6f
gnu: r-matrixstats: Update to 0.52.1.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06 14:39:17 +02:00
af7a4cc8a8
gnu: r-mvtnorm: Update to 1.0-6.
...
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06 14:39:17 +02:00
82b281fe12
gnu: r-e1071: Update to 1.6-8.
...
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06 14:39:16 +02:00
1d1fbb7336
gnu: r-sparsem: Update to 1.76.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06 14:39:16 +02:00
fb708a1c74
gnu: r-xml: Update to 3.98-1.6.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06 14:39:16 +02:00
1c27bb8f44
gnu: r-rsqlite: Update to 1.1-2.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06 14:39:16 +02:00
0def707ad8
gnu: r-rmarkdown: Update to 1.4.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06 14:39:16 +02:00
ac5e810205
gnu: r-bbmisc: Update to 1.11.
...
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06 14:39:16 +02:00
f1870aef99
gnu: r-backports: Update to 1.0.5.
...
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06 14:39:15 +02:00
d05e45f33c
gnu: r-multitaper: Update to 1.0-13.
...
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06 14:39:15 +02:00
0fbae8ebca
gnu: r-xml2: Update to 1.1.1.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06 14:39:15 +02:00
c6e40db528
gnu: r-ade4: Update to 1.7-6.
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06 14:39:15 +02:00
10ffdb94e4
gnu: r-data-table: Update to 1.10.4.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06 14:39:15 +02:00
9e8fac0c45
gnu: r-chron: Update to 2.3-50.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06 14:39:14 +02:00
b8acb5aa46
gnu: r-cluster: Update to 2.0.6.
...
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06 14:39:14 +02:00
e8988ff9a0
gnu: r-dbi: Update to 0.6-1.
...
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06 14:39:14 +02:00
5e0fa201a2
gnu: r-gdtools: Update to 0.1.4.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06 14:39:14 +02:00
7267f358a0
gnu: r-stringr: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06 14:39:14 +02:00
5beda28f6b
gnu: r-stringi: Update to 1.1.3.
...
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06 14:39:14 +02:00
69a8ed6a12
gnu: r-rcpp: Update to 0.12.10.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06 14:39:13 +02:00
9948b8e24c
gnu: r-digest: Update to 0.6.12.
...
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06 14:39:13 +02:00
344e4741a1
gnu: r-survival: Update to 2.41-3.
...
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06 14:39:13 +02:00
a6dcc78cb0
gnu: r-mgcv: Update to 1.8-17.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
2017-04-06 14:39:13 +02:00
9704bda1b3
gnu: r-matrix: Update to 1.2-8.
...
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8.
2017-04-06 14:39:12 +02:00
9aea2cdaff
gnu: r-lattice: Update to 0.20-35.
...
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35.
2017-04-06 14:39:12 +02:00
7ceb26ee83
gnu: r-rprojroot: Update to 1.2.
...
* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2.
2017-04-06 14:39:12 +02:00
d51f05f769
gnu: r-tidyr: Update to 0.6.1.
...
* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1.
[propagated-inputs]: Add "r-tibble".
2017-04-06 14:39:10 +02:00
1db293757b
gnu: r-roxygen2: Update to 6.0.1.
...
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1.
[propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2".
2017-04-06 14:39:10 +02:00
bf6dcf59eb
gnu: Add r-commonmark.
...
* gnu/packages/statistics.scm (r-commonmark): New variable.
2017-04-06 14:39:10 +02:00
1cbb07a8e4
gnu: Add r-desc.
...
* gnu/packages/statistics.scm (r-desc): New variable.
2017-04-06 14:39:10 +02:00
67deeea41b
gnu: r-readr: Update to 1.1.0.
...
* gnu/packages/statistics.scm (r-readr): Update to 1.1.0.
[propagated-inputs]: Remove "r-curl".
2017-04-06 14:39:09 +02:00
33eb555e6f
gnu: r-tibble: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0.
[propagated-inputs]: Remove "r-assertthat".
2017-04-06 14:39:09 +02:00
7bf837fd43
gnu: Use HTTPS URLs for GitHub home-pages.
...
* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm,
gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm,
gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm,
gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm,
gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on
GitHub.
2017-04-02 20:00:51 -04:00
84157bb8bf
Merge branch 'master' into core-updates
...
Most conflicts are from 6fd52309b8
2017-03-30 22:59:53 +02:00
6fd52309b8
gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.
...
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-30 01:30:16 +02:00
378de69c59
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-22 12:57:37 +02:00
e2c4fe7c62
gnu: Add r-cairo.
...
* gnu/packages/statistics.scm (r-cairo): New variable.
2017-03-20 21:16:11 +01:00
f67337e23e
Merge branch 'master' into core-updates
2017-03-19 18:52:12 -04:00
60c9190e21
gnu: r-minimal: Fix remaining reproducibility problems.
...
Fixes <https://bugs.gnu.org/25598 >.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
2017-03-17 10:14:02 +01:00
2d7c4ae3ee
gnu: r: Rename to r-minimal.
...
* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
2017-03-17 10:14:02 +01:00
f1fe5283c9
gnu: Add r-with-recommended-packages.
...
* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
2017-03-17 10:14:02 +01:00
aeb64f3cb2
gnu: r: Do not build recommended packages.
...
* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
2017-03-17 10:14:02 +01:00
6eaa9bfba6
gnu: r-survival: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
2017-03-17 10:14:02 +01:00
4b005c7a75
gnu: Add r-spatial.
...
* gnu/packages/statistics.scm (r-spatial): New variable.
2017-03-17 10:14:01 +01:00
567b154fb0
gnu: r-rpart: Move to the set of recommended packages.
...
* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
2017-03-17 10:14:01 +01:00
a5a343656b
gnu: r-nnet: Move to set of recommended R packages.
...
* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
2017-03-17 10:14:01 +01:00
ac8d738b97
gnu: r-mgcv: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
248f65269a
gnu: Add r-nlme.
...
* gnu/packages/statistics.scm (r-nlme): New variable.
2017-03-17 10:14:01 +01:00
69e14f9ec7
gnu: r-matrix: Move to set of recommended R packages.
...
* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
2017-03-17 10:14:01 +01:00
060c12868b
gnu: r-lattice: Move to other recommended R packages.
...
* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
2017-03-17 10:14:01 +01:00
e88bad6ddb
gnu: Add r-kernsmooth.
...
* gnu/packages/statistics.scm (r-kernsmooth): New variable.
2017-03-17 10:14:00 +01:00
69fddd2d6e
gnu: Add r-foreign.
...
* gnu/packages/statistics.scm (r-foreign): New variable.
2017-03-17 10:14:00 +01:00
c1999c5910
gnu: Add r-codetools.
...
* gnu/packages/statistics.scm (r-codetools): New variable.
2017-03-17 10:14:00 +01:00
a27bfb8484
gnu: Add r-cluster.
...
* gnu/packages/statistics.scm (r-cluster): New variable.
2017-03-17 10:14:00 +01:00
7489258751
gnu: Add r-class.
...
* gnu/packages/statistics.scm (r-class): New variable.
2017-03-17 10:14:00 +01:00
c7e80a7e0d
gnu: Add r-mass.
...
* gnu/packages/statistics.scm (r-mass): New variable.
2017-03-17 10:14:00 +01:00
8f0069170c
gnu: Add r-boot.
...
* gnu/packages/statistics.scm (r-boot): New variable.
2017-03-17 10:14:00 +01:00
3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates
2017-03-13 23:08:49 +02:00
3288e647e3
gnu: r-hexbin: Update to 1.27.1-1.
...
The package tarball was updated in place, resulting in a change in the hash
value. We decided to bump the version to 1.27.1-1 instead of keeping the
version at upstream's 1.27.1.
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1.
2017-03-13 10:34:00 +01:00
3ffaec136f
gnu: Add a tzdata variant for testing purposes.
...
* gnu/packages/base.scm (tzdata-2017a): New variable.
* gnu/packages/glib.scm (glib)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
* gnu/packages/statistics.scm (r)[inputs]: Remove tzdata.
[native-inputs]: Add tzdata-2017a.
[arguments]: Add tzdata-2017a to #:disallowed-references.
2017-03-12 20:45:46 -04:00
a5935d1946
gnu: Add r-tsne.
...
* gnu/packages/bioinformatics.scm (r-tsne): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
02eec38ee1
gnu: Add r-ranger.
...
* gnu/packages/statistics.scm (r-ranger): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
d1906e3147
gnu: Add r-tclust.
...
* gnu/packages/statistics.scm (r-tclust): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:07 +10:00
5a200a24eb
gnu: Add r-sn.
...
* gnu/packages/statistics.scm (r-sn): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
06085b5bc5
gnu: Add r-numderiv.
...
* gnu/packages/statistics.scm (r-numderiv): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
fe68c8a990
gnu: Add r-mnormt.
...
* gnu/packages/statistics.scm (r-mnormt): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
362ea0dc29
gnu: Add r-rcppprogress.
...
* gnu/packages/statistics.scm (r-rcppprogress): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa890f6185
gnu: Add r-caret.
...
* gnu/packages/statistics.scm (r-caret): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
ab2ec643c3
gnu: Add r-car.
...
* gnu/packages/statistics.scm (r-car): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
a3eb8c8191
gnu: Add r-pbkrtest.
...
* gnu/packages/statistics.scm (r-pbkrtest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
51fc7d8c31
gnu: Add r-lme4.
...
* gnu/packages/statistics.scm (r-lme4): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
c549864d90
gnu: Add r-nloptr.
...
* gnu/packages/statistics.scm (r-nloptr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
49dc1fa5cb
gnu: Add r-quantreg.
...
* gnu/packages/statistics.scm (r-quantreg): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
545d0789fc
gnu: Add r-matrixmodels.
...
* gnu/packages/statistics.scm (r-matrixmodels): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
aa84100011
gnu: Add r-modelmetrics.
...
* gnu/packages/statistics.scm (r-modelmetrics): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
21cfad44c1
gnu: Add r-rcppeigen.
...
* gnu/packages/statistics.scm (r-rcppeigen): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:06 +10:00
0392f82fd5
gnu: Add r-minqa.
...
* gnu/packages/statistics.scm (r-minqa): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12 10:28:05 +10:00
e08ad76658
gnu: Add r-fnn.
...
* gnu/packages/statistics.scm (r-fnn): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:55:28 +10:00
7711f61450
gnu: Add r-pbapply.
...
* gnu/packages/statistics.scm (r-pbapply): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:51:50 +10:00
d4cebae286
gnu: Add r-vgam.
...
* gnu/packages/statistics.scm (r-vgam): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 11:47:02 +10:00
a409e8b52f
gnu: Add r-fpc.
...
* gnu/packages/statistics.scm (r-fpc): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5da4f84f1f
gnu: Add r-trimcluster.
...
* gnu/packages/statistics.scm (r-trimcluster): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c0cab38e03
gnu: Add r-robustbase.
...
* gnu/packages/statistics.scm (r-robustbase): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
cda0720805
gnu: Add r-deoptimr.
...
* gnu/packages/statistics.scm (r-deoptimr): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
c962816dc4
gnu: Add r-prabclus.
...
* gnu/packages/statistics.scm (r-prabclus): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:26 +10:00
5638e15475
gnu: Add r-mclust.
...
* gnu/packages/statistics.scm (r-mclust): New variable.
Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
a1f2668e6c
gnu: Add r-flexmix.
...
* gnu/packages/statistics.scm (r-flexmix): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
1721fb4fe7
gnu: Add r-modeltools.
...
* gnu/packages/statistics.scm (r-modeltools): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
d5eca4f9ac
gnu: Add r-diptest.
...
* gnu/packages/statistics.scm (r-diptest): New variable.
Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11 10:43:25 +10:00
f2ac937924
gnu: r: Remove obsolete configure flags.
...
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09 07:38:24 +01:00
f7db12022c
gnu: r: Update to 3.3.3.
...
* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-09 07:38:24 +01:00
beaa026aa7
gnu: r: Fix more reproducibility problems.
...
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the
build system that need special treatment for reproducibility.
2017-03-08 12:32:49 +01:00
745c687be3
gnu: r: Fix syntax for INSTALL_OPTS.
...
This is a follow-up to commit 4621acfd82
2017-03-08 12:32:49 +01:00
6cb7477699
gnu: python-statsmodels: Update to 0.8.0.
...
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
2017-03-06 23:24:11 +01:00
9c53993fb2
gnu: r-gtable: Remove duplicate definition.
...
* gnu/packages/statistics.scm (r-gtable): Remove shadowed 0.1.2 version.
[home-page]: Use HTTPS.
[synopsis, description]: Use those of the removed version.
2017-03-03 00:59:30 +01:00
fe08b1a759
gnu: r-codetools: Remove duplicate definition.
...
* gnu/packages/statistics.scm (r-codetools): Remove shadowed 0.2-14 version.
[home-page]: Use HTTPS.
2017-03-03 00:59:30 +01:00
4621acfd82
gnu: r: Build default packages reproducibly.
...
This is a follow-up to commit de643f0c15
2017-02-07 20:04:49 +01:00
c6dced88f2
gnu: Add r-rann.
...
* gnu/packages/statistics.scm (r-rann): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-03 14:21:22 -05:00
37337699d7
gnu: Add r-randomforest.
...
* gnu/packages/statistics.scm (r-randomforest): New variable.
Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-02-03 14:12:51 -05:00
e4b6c565be
gnu: r-ggplot2: Add r-svglite to propagated-inputs.
...
* gnu/packages/statistics.scm (r-ggplot2)[propagated-inputs]: Add
r-svglite.
2017-01-23 21:23:33 +10:00
e431eb670d
gnu: Add r-fastica.
...
* gnu/packages/statistics.scm (r-fastica): New variable.
2017-01-20 15:38:03 +01:00
793f2edbbc
gnu: Add r-lars.
...
* gnu/packages/statistics.scm (r-lars): New variable.
2017-01-20 15:38:03 +01:00
efba686c80
gnu: Add r-mixtools.
...
* gnu/packages/statistics.scm (r-mixtools): New variable.
2017-01-20 15:38:03 +01:00
c6017f7222
gnu: Add r-cowplot.
...
* gnu/packages/statistics.scm (r-cowplot): New variable.
2017-01-20 15:38:02 +01:00
26a281ef27
gnu: Add r-compquadform.
...
* gnu/packages/statistics.scm (r-compquadform): New variable.
2017-01-17 21:46:48 +01:00
5f764dd7ff
gnu: Add r-fivethirtyeight.
...
* gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
2017-01-17 21:46:47 +01:00
ac1f1e4e02
gnu: Add r-ggthemes.
...
* gnu/packages/statistics.scm (r-ggthemes): New variable.
2017-01-12 15:14:04 +01:00
7b030c9f9b
gnu: r-plotrix: Update to 3.6-4.
...
* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-4.
2017-01-03 13:51:05 +01:00
0c74399d98
gnu: r-git2r: Update to 0.18.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.18.0.
2017-01-03 13:49:18 +01:00
807db78fc9
gnu: r-hmisc: Update to 4.0-2.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-2.
[propagated-inputs]: Add r-base64enc.
2017-01-03 13:46:14 +01:00
437d064dc5
gnu: r-openssl: Update to 0.9.6.
...
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.6.
2017-01-03 13:39:51 +01:00
da13738ef0
gnu: r-ggplot2: Update to 2.2.1.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.1.
2017-01-03 13:34:53 +01:00
35bb2ff88a
gnu: r-rsqlite: Update to 1.1-1.
...
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-1.
[propagated-inputs]: Add r-bh, r-memoise, r-plogr, and r-rcpp.
2016-12-29 21:49:13 +01:00
28c041afe8
gnu: Add r-plogr.
...
* gnu/packages/statistics.scm (r-plogr): New variable.
2016-12-29 21:49:13 +01:00
ab607061cd
gnu: r-hmisc: Update to 4.0-1.
...
* gnu/packages/statistics.scm (r-hmisc): Update to 4.0-1.
[propagated-inputs]: Remove r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart; add r-base64.
2016-12-29 21:49:12 +01:00
0811f0f9d2
gnu: Add r-base64.
...
* gnu/packages/statistics.scm (r-base64): New variable.
2016-12-29 21:49:12 +01:00
ca380feb37
gnu: r-rmarkdown: Update to 1.3.
...
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.3.
[propagated-inputs]: Remove r-tibble; add r-rprojroot.
2016-12-29 21:49:12 +01:00
046e27e3f5
gnu: Add r-rprojroot.
...
* gnu/packages/statistics.scm (r-rprojroot): New variable.
2016-12-29 21:49:12 +01:00
a8e45b3240
gnu: r-rcpparmadillo: Update to 0.7.600.1.0.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.600.1.0.
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.600.1.
2016-12-29 21:49:12 +01:00
c729d3dc0e
gnu: r-zoo: Update to 1.7-14.
...
* gnu/packages/statistics.scm (r-zoo): Update to 1.7-14.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
53941eb7a5
gnu: r-fastcluster: Update to 1.1.22.
...
* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.22.
2016-12-29 21:49:11 +01:00
3a181dc46e
gnu: r-plotly: Update to 4.5.6.
...
* gnu/packages/statistics.scm (r-plotly): Update to 4.5.6.
2016-12-29 21:49:11 +01:00
54aa6eb6ee
gnu: r-r-rsp: Update to 0.40.0.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.40.0.
2016-12-29 21:49:11 +01:00
1a44753b95
gnu: r-r-utils: Update to 2.5.0.
...
* gnu/packages/statistics.scm (r-r-utils): Update to 2.5.0.
2016-12-29 21:49:11 +01:00
62350c0797
gnu: r-coda: Update to 0.19-1.
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* gnu/packages/statistics.scm (r-coda): Update to 0.19-1.
[propagated-inputs]: Remove r-lattice.
2016-12-29 21:49:11 +01:00
3607afbe4c
gnu: r-chron: Update to 2.3-48.
...
* gnu/packages/statistics.scm (r-chron): Update to 2.3-48.
2016-12-29 21:49:11 +01:00
eaec5506ad
gnu: r-knitr: Update to 1.15.1.
...
* gnu/packages/statistics.scm (r-knitr): Update to 1.15.1.
[propagated-inputs]: Remove r-formatr.
2016-12-29 21:49:10 +01:00
fd7810d323
gnu: r-bh: Update to 1.62.0-1.
...
* gnu/packages/statistics.scm (r-bh): Update to 1.62.0-1.
2016-12-29 21:49:10 +01:00
dd4ae2950a
gnu: r-svglite: Update to 1.2.0.
...
* gnu/packages/statistics.scm (r-svglite): Update to 1.2.0.
2016-12-29 21:49:10 +01:00
48a87bbe3b
gnu: r-gdtools: Update to 0.1.3.
...
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.3.
2016-12-29 21:49:10 +01:00
ab01f1cdb1
gnu: r-ggplot2: Update to 2.2.0.
...
* gnu/packages/statistics.scm (r-ggplot2): Update to 2.2.0.
[propagated-inputs]: Remove r-proto and r-svglite; add r-lazyeval and
r-tibble.
2016-12-29 21:49:10 +01:00
b94b03b7fa
gnu: r-scales: Update to 0.4.1.
...
* gnu/packages/statistics.scm (r-scales): Update to 0.4.1.
2016-12-29 21:49:10 +01:00
8a8fc31c6a
gnu: r-mgcv: Update to 1.8-16.
...
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-16.
2016-12-29 21:49:10 +01:00
2a1c1b8074
gnu: r-hms: Update to 0.3.
...
* gnu/packages/statistics.scm (r-hms): Update to 0.3.
2016-12-29 21:49:09 +01:00
85455a08f4
gnu: r-git2r: Update to 0.17.0.
...
* gnu/packages/statistics.scm (r-git2r): Update to 0.17.0.
2016-12-29 21:49:09 +01:00
abb6f0540e
gnu: r-ade4: Update to 1.7-5
...
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-5.
2016-12-29 21:49:09 +01:00
db1b38af4e
gnu: r-xml: Update to 3.98-1.5.
...
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.5.
[propagated-inputs]: Remove r-rcurl.
2016-12-29 21:49:09 +01:00
773a50114c
gnu: r-sparsem: Update to 1.74.
...
* gnu/packages/statistics.scm (r-sparsem): Update to 1.74.
2016-12-29 21:49:09 +01:00
76ce7c3767
gnu: r-data-table: Update to 1.10.0.
...
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.0.
[propagated-inputs]: Remove r-chron.
2016-12-29 21:49:09 +01:00
58b93ad5d9
gnu: r-estimability: Update to 1.2.
...
* gnu/packages/statistics.scm (r-estimability): Update to 1.2.
2016-12-29 21:49:08 +01:00
eebac90aa8
gnu: r-rcpp: Update to 0.12.8.
...
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.8.
2016-12-29 21:49:08 +01:00
9cdf10f1c9
gnu: r-yaml: Update to 2.1.14.
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* gnu/packages/statistics.scm (r-yaml): Update to 2.1.14.
2016-12-29 21:49:08 +01:00
94a6f20baf
gnu: r-colorspace: Update to 1.3-2.
...
* gnu/packages/statistics.scm (r-colorspace): Update to 1.3-2.
2016-12-29 20:10:07 +01:00
2fd261a37a
gnu: Add r-statmod.
...
* gnu/packages/statistics.scm (r-statmod): New variable.
2016-12-29 19:54:59 +01:00
294304169a
gnu: Add r-ggbeeswarm.
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* gnu/packages/statistics.scm (r-ggbeeswarm): New variable.
2016-12-29 19:54:59 +01:00
649d0c4841
gnu: Add r-sourcetools.
...
* gnu/packages/statistics.scm (r-sourcetools): New variable.
2016-12-29 19:54:59 +01:00
6ba279853c
gnu: Add r-beeswarm.
...
* gnu/packages/statistics.scm (r-beeswarm): New variable.
2016-12-29 19:54:59 +01:00
069581351b
gnu: Add r-vipor.
...
* gnu/packages/statistics.scm (r-vipor): New variable.
2016-12-29 19:54:58 +01:00
a1814e4a27
gnu: r: Update to 3.3.2.
...
* gnu/packages/statistics.scm (r): Update to 3.3.2.
2016-12-18 10:02:52 +10:00
ce3f92e701
gnu: Add r-bit64.
...
* gnu/packages/statistics.scm (r-bit64): New variable.
2016-12-14 20:43:28 +10:00
42066e6b4a
gnu: Add r-bit.
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* gnu/packages/statistics.scm (r-bit): New variable.
2016-12-14 20:43:28 +10:00
3bf4280659
Merge branch 'master' into python-build-system
2016-11-29 18:47:16 +01:00
419a8a186f
gnu: Add r-rocr.
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* gnu/packages/statistics.scm (r-rocr): New variable.
2016-11-28 22:43:18 +01:00
0cfe0570f2
gnu: Add r-gplots.
...
* gnu/packages/statistics.scm (r-gplots): New variable.
2016-11-28 22:43:18 +01:00
6034cd905e
gnu: Add r-gdata.
...
* gnu/packages/statistics.scm (r-gdata): New variable.
2016-11-28 22:43:18 +01:00
1571f90e35
gnu: Add r-gtools.
...
* gnu/packages/statistics.scm (r-gtools): New variable.
2016-11-28 22:43:17 +01:00
6335bf1c80
gnu: Add r-sfsmisc.
...
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
2016-11-28 22:43:17 +01:00
1bd46f5520
gnu: Add r-fastcluster.
...
* gnu/packages/statistics.scm (r-fastcluster): New variable.
2016-11-28 22:43:16 +01:00
c4708783ee
gnu: Add r-preprocesscore.
...
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
2016-11-28 22:43:16 +01:00
c9a6671490
gnu: Add r-dynamictreecut.
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* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
2016-11-28 22:43:16 +01:00
e7d16ad161
gnu: Add r-spams.
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* gnu/packages/statistics.scm (r-spams): New variable.
2016-11-28 22:43:16 +01:00
9f5435d963
gnu: Add r-googlesheets.
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* gnu/packages/statistics.scm (r-googlesheets): New variable.
2016-11-28 22:43:16 +01:00
d427e03eee
gnu: Add r-cellranger.
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* gnu/packages/statistics.scm (r-cellranger): New variable.
2016-11-28 22:43:15 +01:00
58612fd2c8
gnu: Add r-rematch.
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* gnu/packages/statistics.scm (r-rematch): New variable.
2016-11-28 22:43:15 +01:00
25b2c47d75
gnu: python-statsmodels: Fix build
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* gnu/packages/statistics.scm (python-statsmodels): [check] set
PYTHONPATH prior to running tests.
2016-11-15 22:31:33 +01:00
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs).
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Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
configure-flags. (python-pillow) remove phase
"disable-egg-generation". (python-libarchive-c) Remove patching
setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
"prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
"disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
2016-11-15 22:31:02 +01:00
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a)
...
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
2016-11-15 22:28:59 +01:00
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3)
...
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
2016-11-15 22:28:38 +01:00
2cab1dd58b
Merge branch 'core-updates'
2016-11-13 00:34:16 +01:00
b8deffe2b2
gnu: r-rmarkdown: Remove phase "copy-files-without-mode".
...
This phase is no longer needed as upstream has merged the fix in the
current release.
* gnu/packages/statistics.scm (r-rmarkdown)[arguments]: Remove build
phase "copy-files-without-mode".
2016-11-10 18:49:49 +01:00
71e21fb26d
Merge branch 'master' into core-updates
2016-11-07 00:33:16 -05:00
73ea83f517
gnu: r-proto: Update project's home-page.
...
* gnu/packages/statistics.scm (r-proto)[home-page]: Update project's home-page.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2016-11-06 14:35:21 +02:00
8b6ad165d1
Merge branch 'master' into core-updates
2016-11-06 03:29:06 -05:00
8af47ef603
gnu: r-nmf: Use bigmemory.
...
* gnu/packages/statistics.scm (r-nmf)[propagated-inputs]: Add
r-bigmemory and r-synchronicity.
2016-11-04 14:53:24 +01:00
59523c4cf5
gnu: Add r-bigmemory.
...
* gnu/packages/statistics.scm (r-bigmemory): New variable.
2016-11-04 14:46:47 +01:00
4a83865286
gnu: Add r-synchronicity.
...
* gnu/packages/statistics.scm (r-synchronicity): New variable.
2016-11-04 14:40:13 +01:00
Leo Famulari