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41382 Commits

Author SHA1 Message Date
Ricardo Wurmus 5ec5ba0272
gnu: Add r-methylumi. 
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
 2019-03-13 13:35:33 +01:00
Ricardo Wurmus 0f5c9cec50
gnu: Add r-fdb-infiniummethylation-hg19. 
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
 2019-03-13 13:35:18 +01:00
Ricardo Wurmus 86fded86c2
gnu: portaudio: Build position independent code and install more headers. 
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and
initialize libtool in new build phase "build-only-position-independent-code";
install extra header in new build phase "install-missing-headers".
 2019-03-13 13:19:06 +01:00
Ricardo Wurmus 0fbaf1956b
gnu: Add r-minfi. 
* gnu/packages/bioconductor.scm (r-minfi): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 34a24f95ec
gnu: Add r-bumphunter. 
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f4eac09653
gnu: Add r-siggenes. 
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus eed6ff0358
gnu: Add r-illuminaio. 
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f9201d6704
gnu: Add r-geoquery. 
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus f088775799
gnu: Add r-scone. 
* gnu/packages/bioconductor.scm (r-scone): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus b409c3570f
gnu: Add r-scdd. 
* gnu/packages/bioconductor.scm (r-scdd): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 6213e44185
gnu: Add r-noiseq. 
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 2d7627cfff
gnu: Add r-monocle. 
* gnu/packages/bioconductor.scm (r-monocle): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 925fcdbb79
gnu: Add r-mast. 
* gnu/packages/bioconductor.scm (r-mast): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 251e08301a
gnu: Add r-icobra. 
* gnu/packages/bioconductor.scm (r-icobra): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 648dbd2702
gnu: Add r-beanplot. 
* gnu/packages/cran.scm (r-beanplot): New variable.
 2019-03-13 13:17:52 +01:00
Ricardo Wurmus 026dd77c63
gnu: Add r-nor1mix. 
* gnu/packages/cran.scm (r-nor1mix): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 30f53ec86d
gnu: Add r-ggextra. 
* gnu/packages/cran.scm (r-ggextra): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus c27927dbf5
gnu: Add r-colourpicker. 
* gnu/packages/cran.scm (r-colourpicker): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 5146a24ece
gnu: Add r-shinyjs. 
* gnu/packages/cran.scm (r-shinyjs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 849350fbce
gnu: Add r-shinybs. 
* gnu/packages/cran.scm (r-shinybs): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 704de8f5ee
gnu: Add r-ihw. 
* gnu/packages/bioconductor.scm (r-ihw): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 2cb71d81a4
gnu: Add r-lpsymphony. 
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 3087a2f37b
gnu: Add r-ebseq. 
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
 2019-03-13 13:17:51 +01:00
Ricardo Wurmus 7ed869f796
gnu: Add r-nbpseq. 
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
 2019-03-13 13:17:51 +01:00
Nicolas Goaziou 2b6ab17f7d
gnu: wireshark: Update to 3.0.0. 
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
 2019-03-13 12:31:13 +01:00
Tomáš Čech 77f3d30364
gnu: python-py3status: Update to 3.16. 
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
 2019-03-13 10:06:19 +01:00
Jack Hill 2f041a4cef
gnu: r-minpack-lm: Fix typo in description. 
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2019-03-13 00:37:11 -04:00
Nicolas Goaziou 0d5101c3a3
gnu: rosegarden: Update to 18.12. 
* gnu/packages/music.scm (rosegarden): Update to 18.12.
[arguments]: Remove unused flag.
 2019-03-12 23:58:52 +01:00
Nicolas Goaziou a269c89457
gnu: musescore: Update to 3.0.5. 
* gnu/packages/music.scm (musescore): Update to 3.0.5.
 2019-03-12 23:58:52 +01:00
Ludovic Courtès 3f4f2ee404
describe: 'package-path-entries' no longer includes the "guix" entry. 
Fixes <https://bugs.gnu.org/34833>
Reported by mikadoZero <mikadozero@yandex.com>.

By returning the "guix" entry, we were then adding it to
%PACKAGE-MODULE-PATH, causing the discovery code to scan the whole tree,
including gnu/installer modules, which would in turn lead to warnings.
Regression introduced in bfc9c33930.

* guix/describe.scm (package-path-entries): Use
'current-channel-entries', not 'current-profile-entries'.
 2019-03-12 23:51:32 +01:00
Ludovic Courtès c9c51ac39a
Revert "packages: 'package-input-rewriting' can take a promise." 
This reverts commit 7d2be1277b, which
turned out to be unhelpful for the problem at hand:

  https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
 2019-03-12 23:51:32 +01:00
Ricardo Wurmus 29e76f0722
gnu: guile-stis-parser: Override source file name. 
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name
for git checkout.
 2019-03-12 22:48:40 +01:00
Ricardo Wurmus 173c99601a
gnu: Add r-deds. 
* gnu/packages/bioconductor.scm (r-deds): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 5570804a69
gnu: Add r-zim. 
* gnu/packages/cran.scm (r-zim): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus be0777ba86
gnu: Add r-penalized. 
* gnu/packages/cran.scm (r-penalized): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4d1f19e02c
gnu: Add r-nonnest2. 
* gnu/packages/cran.scm (r-nonnest2): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus ca3f13704a
gnu: Add r-lavaan. 
* gnu/packages/cran.scm (r-lavaan): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus e8be5a0098
gnu: Add r-pbivnorm. 
* gnu/packages/cran.scm (r-pbivnorm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 9e2ff342aa
gnu: Add r-msir. 
* gnu/packages/cran.scm (r-msir): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 01fe44cbdc
gnu: Add r-moments. 
* gnu/packages/cran.scm (r-moments): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 4fd994432f
gnu: Add r-minpack-lm. 
* gnu/packages/cran.scm (r-minpack-lm): New variable.
 2019-03-12 22:47:57 +01:00
Ricardo Wurmus 061a4b6850
gnu: Add r-gamlss-dist. 
* gnu/packages/cran.scm (r-gamlss-dist): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus c60e3e10f3
gnu: Add r-drimpute. 
* gnu/packages/cran.scm (r-drimpute): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5f673e2c1c
gnu: Add r-cobs. 
* gnu/packages/cran.scm (r-cobs): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 5fde35b385
gnu: Add r-compositions. 
* gnu/packages/cran.scm (r-compositions): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 7d779142ab
gnu: Add r-rarpack. 
* gnu/packages/cran.scm (r-rarpack): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 262ab4b17c
gnu: Add r-tensora. 
* gnu/packages/cran.scm (r-tensora): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 8cd3f49d46
gnu: Add r-bayesm. 
* gnu/packages/cran.scm (r-bayesm): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 1901a53241
gnu: Add r-outliers. 
* gnu/packages/cran.scm (r-outliers): New variable.
 2019-03-12 22:47:56 +01:00
Ricardo Wurmus 4af186a963
gnu: Add r-upsetr. 
* gnu/packages/cran.scm (r-upsetr): New variable.
 2019-03-12 22:47:56 +01:00